UHGV-0085114

Genome information

Genome length 37,363 bps

CDS count 49

Completeness 99.81% (high-quality)

geNomad score 0.9752

Prediction confidence Confident

Genome information
Genome ID	UHGV-0085114
vOTU ID	vOTU-008680
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_160773
BioSample	SAMEA3136636
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.81% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9752
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.41
Jumbo phage	No

Genome content
Genome length	37,363 bps
GC content	35.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	89.53%
Average CDS length	687.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0085114_1	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0085114_1	UniRef90	UniRef90_L1Q0C0	Peptidase_M15_4 domain-containing protein	NA
UHGV-0085114_1	eggNOG-mapper	478749.BRYFOR_06004	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0085114_1	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0085114_1	COG	COG2843	Poly-gamma-glutamate biosynthesis protein CapA/YwtB (capsule formation), metallophosphatase superfamily	NA
UHGV-0085114_2	UniRef90	UniRef90_L1Q180	AAA-ATPase_like domain-containing protein	NA
UHGV-0085114_2	eggNOG-mapper	1121115.AXVN01000019_gene154	COG NOG08812 non supervised orthologous group	NA
UHGV-0085114_2	Pfam	PF09820	Predicted AAA-ATPase	AAA-ATPase_like
UHGV-0085114_2	Pfam	PF08011	PD-(D/E)XK nuclease superfamily	PDDEXK_9
UHGV-0085114_2	COG	COG4637	Predicted ATPase	NA
UHGV-0085114_2	Structural annotation	PF09820, PF08011, MF_01247, MF_00048, NF011275, NF001623, COG2909, COG0792	NA	NA
UHGV-0085114_3	PHROG	phrog_23452	NA	unknown function
UHGV-0085114_3	UniRef90	UniRef90_A0A1Q2CB98	PG_binding_1 domain-containing protein	NA
UHGV-0085114_3	eggNOG-mapper	1232447.BAHW02000009_gene383	Putative peptidoglycan binding domain	NA
UHGV-0085114_3	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0085114_3	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0085114_3	Structural annotation	PF01471, COG3409	NA	NA
UHGV-0085114_4	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0085114_4	PHROG	phrog_95	integrase	integration and excision
UHGV-0085114_4	UniRef90	UniRef90_D4MVK2	Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0085114_4	eggNOG-mapper	658088.HMPREF0987_00026	Recombinase	NA
UHGV-0085114_4	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0085114_4	Pfam	PF07508	Recombinase	Recombinase
UHGV-0085114_4	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0085114_4	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0085114_4	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0085114_5	PHROG	phrog_87	metallo-protease	other
UHGV-0085114_5	UniRef90	UniRef90_A0A084JI98	Peptidase_M78 domain-containing protein	NA
UHGV-0085114_5	eggNOG-mapper	318464.IO99_00420	IrrE N-terminal-like domain	NA
UHGV-0085114_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0085114_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0085114_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0085114_6	PHROG	phrog_2695	NA	unknown function
UHGV-0085114_6	UniRef90	UniRef90_UPI00073F50E0	SIR2 family protein	NA
UHGV-0085114_6	eggNOG-mapper	1504823.CCMM01000008_gene1082	NAD+ binding	NA
UHGV-0085114_6	PADLOC	Sirtuin_Blast2	NA	NA
UHGV-0085114_6	Pfam	PF13289	SIR2-like domain	SIR2_2
UHGV-0085114_6	COG	COG0846	NAD-dependent protein deacetylase, SIR2 family	NA
UHGV-0085114_6	Structural annotation	PF13289	NA	NA
UHGV-0085114_7	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0085114_7	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0085114_7	UniRef90	UniRef90_A0A174BZX4	DNA polymerase III polC-type	NA
UHGV-0085114_7	eggNOG-mapper	1123288.SOV_2c03960	DNA polymerase III	NA
UHGV-0085114_7	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0085114_7	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0085114_7	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0085114_7	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0085114_7	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0085114_7	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-0085114_8	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0085114_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0085114_8	UniRef90	UniRef90_A0A166RHX5	HTH-type transcriptional regulator SinR	NA
UHGV-0085114_8	eggNOG-mapper	1280692.AUJL01000009_gene2970	Helix-turn-helix XRE-family like proteins	NA
UHGV-0085114_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0085114_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0085114_8	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0085114_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0085114_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0085114_9	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0085114_12	PHROG	phrog_643	transcriptional regulator	transcription regulation
UHGV-0085114_12	UniRef90	UniRef90_A0A8E3SKS6	NA	NA
UHGV-0085114_12	eggNOG-mapper	562743.JH976434_gene1050	NA	NA
UHGV-0085114_12	Pfam	PF11195	NA	DUF2829
UHGV-0085114_12	Structural annotation	PF11195	NA	NA
UHGV-0085114_13	PHROG	phrog_750	NA	unknown function
UHGV-0085114_13	eggNOG-mapper	478749.BRYFOR_08527	NA	NA
UHGV-0085114_16	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0085114_16	UniRef90	UniRef90_A0A6P1MGH1	Helix-turn-helix domain-containing protein	NA
UHGV-0085114_16	eggNOG-mapper	1415774.U728_1274	Helix-turn-helix XRE-family like proteins	NA
UHGV-0085114_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0085114_16	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0085114_16	Structural annotation	PF13560, MF_00535, NF007481, COG1476	NA	NA
UHGV-0085114_17	Structural annotation	NF001604	NA	NA
UHGV-0085114_18	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0085114_18	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0085114_18	UniRef90	UniRef90_A0A174QKA2	Sporulation initiation inhibitor protein soj	NA
UHGV-0085114_18	eggNOG-mapper	411470.RUMGNA_02292	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0085114_18	Pfam	PF13614	AAA domain	AAA_31
UHGV-0085114_18	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0085114_18	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0085114_19	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0085114_19	PHROG	phrog_15982	NA	unknown function
UHGV-0085114_19	UniRef90	UniRef90_UPI00156F52F8	ParB/RepB/Spo0J family partition protein	NA
UHGV-0085114_19	eggNOG-mapper	1415774.U728_489	Belongs to the ParB family	NA
UHGV-0085114_19	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0085114_19	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0085114_19	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0085114_20	PHROG	phrog_16304	NA	unknown function
UHGV-0085114_20	UniRef90	UniRef90_L1Q6L3	NA	NA
UHGV-0085114_20	eggNOG-mapper	411490.ANACAC_00800	NA	NA
UHGV-0085114_20	Pfam	PF19808	NA	DUF6291
UHGV-0085114_20	Structural annotation	PF19808	NA	NA
UHGV-0085114_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0085114_23	UniRef90	UniRef90_A0A174QKS9	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0085114_23	eggNOG-mapper	1121289.JHVL01000007_gene2767	sigma factor activity	NA
UHGV-0085114_23	Pfam	PF07374	NA	DUF1492
UHGV-0085114_23	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0085114_24	Structural annotation	PF13518	NA	NA
UHGV-0085114_25	PHROG	phrog_2776	NA	unknown function
UHGV-0085114_25	UniRef90	UniRef90_A0A5S4VR73	Helix-turn-helix domain-containing protein	NA
UHGV-0085114_25	eggNOG-mapper	1298920.KI911353_gene2703	NA	NA
UHGV-0085114_25	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0085114_27	PHROG	phrog_5051	NA	unknown function
UHGV-0085114_28	PHROG	phrog_421	NA	unknown function
UHGV-0085114_28	UniRef90	UniRef90_A0A3R7BR33	NA	NA
UHGV-0085114_28	eggNOG-mapper	1235800.C819_00518	NA	NA
UHGV-0085114_28	Pfam	PF10979	NA	DUF2786
UHGV-0085114_29	UniRef90	UniRef90_A0A174QL97	Chemotaxis protein	NA
UHGV-0085114_29	eggNOG-mapper	1304866.K413DRAFT_0813	NA	NA
UHGV-0085114_29	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-0085114_30	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0085114_30	PHROG	phrog_216	integrase	integration and excision
UHGV-0085114_30	UniRef90	UniRef90_A0A174QLE8	Integrase	NA
UHGV-0085114_30	eggNOG-mapper	1235793.C809_02656	PFAM Phage integrase family	NA
UHGV-0085114_30	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0085114_30	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0085114_30	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0085114_31	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0085114_31	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0085114_31	UniRef90	UniRef90_R5TPY3	Phage related protein	NA
UHGV-0085114_31	eggNOG-mapper	1235792.C808_00081	HNH nucleases	NA
UHGV-0085114_31	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0085114_31	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0085114_32	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0085114_32	UniRef90	UniRef90_A0A3D0M104	RNA polymerase subunit sigma-70	NA
UHGV-0085114_32	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0085114_32	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0085114_32	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0085114_33	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0085114_33	UniRef90	UniRef90_A0A4R3JPR8	Phage terminase large subunit-like protein	NA
UHGV-0085114_33	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0085114_33	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0085114_33	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0085114_33	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0085114_33	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0085114_34	PHROG	phrog_12	portal protein	head and packaging
UHGV-0085114_34	UniRef90	UniRef90_A0A4V2UQ51	HK97 family phage portal protein	NA
UHGV-0085114_34	eggNOG-mapper	610130.Closa_0742	Phage portal protein, HK97 family	NA
UHGV-0085114_34	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0085114_34	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0085114_34	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0085114_34	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0085114_35	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0085114_35	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0085114_35	UniRef90	UniRef90_D9R5G2	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0085114_35	eggNOG-mapper	610130.Closa_0743	Clp protease	NA
UHGV-0085114_35	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0085114_35	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0085114_35	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0085114_36	PHROG	phrog_10	major head protein	head and packaging
UHGV-0085114_36	UniRef90	UniRef90_A0A3E4M759	Phage major capsid protein	NA
UHGV-0085114_36	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0085114_36	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0085114_36	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0085114_36	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0085114_36	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0085114_36	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0085114_37	PHROG	phrog_749	NA	unknown function
UHGV-0085114_37	eggNOG-mapper	1235792.C808_00087	NA	NA
UHGV-0085114_38	PHROG	phrog_19734	NA	unknown function
UHGV-0085114_38	UniRef90	UniRef90_UPI001EE7A060	phage head closure protein	NA
UHGV-0085114_38	eggNOG-mapper	1235792.C808_00088	NA	NA
UHGV-0085114_38	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0085114_39	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0085114_39	UniRef90	UniRef90_D9R5G6	Prophage pi2 protein 37	NA
UHGV-0085114_39	eggNOG-mapper	610130.Closa_0747	COG NOG18351 non supervised orthologous group	NA
UHGV-0085114_39	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0085114_39	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0085114_40	PHROG	phrog_78	tail terminator	connector
UHGV-0085114_40	eggNOG-mapper	610130.Closa_0748	NA	NA
UHGV-0085114_40	Structural annotation	PF20765	NA	NA
UHGV-0085114_41	PHROG	phrog_88	major tail protein	tail
UHGV-0085114_41	UniRef90	UniRef90_A0A3E3ILX6	Phage tail protein	NA
UHGV-0085114_41	eggNOG-mapper	610130.Closa_0749	phage major tail protein, phi13 family	NA
UHGV-0085114_41	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0085114_41	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0085114_42	PHROG	phrog_709	NA	unknown function
UHGV-0085114_42	eggNOG-mapper	879305.HMPREF9290_0132	NA	NA
UHGV-0085114_43	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0085114_43	UniRef90	UniRef90_A0A1H0WFV4	Phage-related minor tail protein (Fragment)	NA
UHGV-0085114_43	eggNOG-mapper	411468.CLOSCI_00194	Phage tail tape measure protein, TP901 family	NA
UHGV-0085114_43	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0085114_43	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0085114_43	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0085114_44	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0085114_44	UniRef90	UniRef90_UPI000E2F9A85	phage tail family protein	NA
UHGV-0085114_44	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-0085114_44	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0085114_44	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0085114_44	COG	COG4722	Phage-related protein YomH	NA
UHGV-0085114_44	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0085114_45	PHROG	phrog_13289	tail protein	tail
UHGV-0085114_45	UniRef90	UniRef90_A0A1C6ES47	Phage-related protein	NA
UHGV-0085114_45	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0085114_45	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0085114_45	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0085114_45	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0085114_45	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0085114_46	PHROG	phrog_26878	virion structural protein	head and packaging
UHGV-0085114_46	UniRef90	UniRef90_UPI0013EAC526	right-handed parallel beta-helix repeat-containing protein	NA
UHGV-0085114_46	eggNOG-mapper	86416.Clopa_2781	Pectate lyase superfamily protein	NA
UHGV-0085114_46	Pfam	PF13229	Right handed beta helix region	Beta_helix
UHGV-0085114_48	PHROG	phrog_199	holin	lysis
UHGV-0085114_48	UniRef90	UniRef90_UPI00033C89C4	phage holin family protein	NA
UHGV-0085114_48	eggNOG-mapper	411461.DORFOR_01186	Bacteriophage holin family	NA
UHGV-0085114_48	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0085114_48	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0085114_48	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0085114_48	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0085114_49	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0085114_49	PHROG	phrog_7	endolysin	lysis
UHGV-0085114_49	UniRef90	UniRef90_D4MWZ1	Lysozyme	NA
UHGV-0085114_49	eggNOG-mapper	397291.C804_01109	Phage lysozyme	NA
UHGV-0085114_49	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0085114_49	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0085114_49	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0085114_49	HAMAP	MF_04110	Endolysin	NA
UHGV-0085114_49	Structural annotation	PF00959, MF_04110, COG3772	NA	NA