UHGV-0085118

Genome information

Genome length 37,117 bps

CDS count 52

Completeness 98.51% (high-quality)

geNomad score 0.9721

Prediction confidence Confident

Genome information
Genome ID	UHGV-0085118
vOTU ID	vOTU-010197
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_143543
BioSample	SAMEA2737676
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.51% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9721
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.89
Jumbo phage	No

Genome content
Genome length	37,117 bps
GC content	61.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	94.35%
Average CDS length	676.90 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0085118_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0085118_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0085118_1	UniRef90	UniRef90_UPI001D103153	recombinase family protein	NA
UHGV-0085118_1	eggNOG-mapper	742722.HMPREF9463_00190	Resolvase, N terminal domain	NA
UHGV-0085118_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0085118_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0085118_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0085118_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0085118_1	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0085118_2	eggNOG-mapper	1408323.JQKK01000024_gene1319	NA	NA
UHGV-0085118_2	NCBIFam	NF038353.1	FxLYD domain-containing protein	NA
UHGV-0085118_2	Structural annotation	PF11906, PF09624, MF_00791, NF038353, NF033903, COG5633	NA	NA
UHGV-0085118_3	KOfam	K18831	higA; HTH-type transcriptional regulator / antitoxin HigA	NA
UHGV-0085118_3	UniRef90	UniRef90_A0A1Y3UMU9	HTH cro/C1-type domain-containing protein	NA
UHGV-0085118_3	eggNOG-mapper	411471.SUBVAR_07015	NA	NA
UHGV-0085118_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0085118_3	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0085118_3	Structural annotation	PF13560, NF041677, COG1396	NA	NA
UHGV-0085118_4	UniRef90	UniRef90_A0A1Y3UQK8	HTH cro/C1-type domain-containing protein	NA
UHGV-0085118_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0085118_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0085118_7	eggNOG-mapper	521003.COLINT_02311	NA	NA
UHGV-0085118_8	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0085118_8	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0085118_8	UniRef90	UniRef90_UPI00197F4C50	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0085118_8	eggNOG-mapper	742722.HMPREF9463_00198	Endodeoxyribonuclease RusA	NA
UHGV-0085118_8	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0085118_8	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0085118_8	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0085118_11	PHROG	phrog_2139	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0085118_11	UniRef90	UniRef90_UPI0013EA84CB	PD-(D/E)XK nuclease family protein	NA
UHGV-0085118_11	eggNOG-mapper	428127.EUBDOL_01249	NA	NA
UHGV-0085118_11	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0085118_11	Structural annotation	PF12705, MF_03030, TIGR04328, COG2251	NA	NA
UHGV-0085118_12	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0085118_12	UniRef90	UniRef90_C4F8E5	Erf family protein	NA
UHGV-0085118_12	eggNOG-mapper	294631.Q5ZGC3_9CAUD	ERF superfamily	NA
UHGV-0085118_12	Pfam	PF04404	ERF superfamily	ERF
UHGV-0085118_12	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0085118_13	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0085118_13	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0085118_13	UniRef90	UniRef90_A0A1Y4HSE1	Single-stranded DNA-binding protein	NA
UHGV-0085118_13	eggNOG-mapper	521003.COLINT_02317	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0085118_13	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0085118_13	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0085118_13	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0085118_13	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0085118_13	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0085118_14	eggNOG-mapper	1232436.CAPF01000014_gene727	Belongs to the UPF0102 family	NA
UHGV-0085118_14	COG	COG0792	Predicted endonuclease distantly related to archaeal Holliday junction resolvase, YraN/UPF0102 family	NA
UHGV-0085118_14	Structural annotation	PF13020, MF_00048, NF009154, COG0792	NA	NA
UHGV-0085118_15	PHROG	phrog_15768	NA	unknown function
UHGV-0085118_15	UniRef90	UniRef90_UPI00096A3265	NA	NA
UHGV-0085118_15	eggNOG-mapper	521003.COLINT_02320	NA	NA
UHGV-0085118_15	Pfam	PF19808	NA	DUF6291
UHGV-0085118_15	Structural annotation	PF19808	NA	NA
UHGV-0085118_16	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0085118_16	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0085118_16	UniRef90	UniRef90_A0A1Y4HSG3	IstB_IS21 domain-containing protein	NA
UHGV-0085118_16	eggNOG-mapper	521003.COLINT_02321	IstB-like ATP binding protein	NA
UHGV-0085118_16	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0085118_16	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0085118_17	eggNOG-mapper	469378.Ccur_02900	NA	NA
UHGV-0085118_20	PHROG	phrog_19458	primase	DNA, RNA and nucleotide metabolism
UHGV-0085118_20	UniRef90	UniRef90_UPI0010565CFE	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0085118_20	eggNOG-mapper	411459.RUMOBE_01108	NA	NA
UHGV-0085118_20	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-0085118_23	Structural annotation	PF19575	NA	NA
UHGV-0085118_24	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0085118_24	PHROG	phrog_589	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0085118_24	UniRef90	UniRef90_A0A1Y3UMW2	HNHc domain-containing protein	NA
UHGV-0085118_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0085118_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0085118_24	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0085118_25	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0085118_25	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0085118_25	UniRef90	UniRef90_A0A1Y3UQM9	ParB domain-containing protein	NA
UHGV-0085118_25	eggNOG-mapper	521003.COLINT_02335	DNA methylase	NA
UHGV-0085118_25	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0085118_25	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0085118_25	COG	COG0863	DNA modification methylase	NA
UHGV-0085118_25	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0085118_26	PHROG	phrog_887	queuine tRNA-ribosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0085118_26	UniRef90	UniRef90_R6N9F6	Mycobacteriophage GP2 protein	NA
UHGV-0085118_26	eggNOG-mapper	445970.ALIPUT_02667	NA	NA
UHGV-0085118_26	Structural annotation	PF00290, MF_01634, TIGR00432, COG0269	NA	NA
UHGV-0085118_27	KOfam	K09125	yhhQ; queuosine precursor transporter	NA
UHGV-0085118_27	PHROG	phrog_4899	NA	unknown function
UHGV-0085118_27	UniRef90	UniRef90_A0A1Y3UFS7	Probable queuosine precursor transporter	NA
UHGV-0085118_27	eggNOG-mapper	420247.Msm_0646	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage	NA
UHGV-0085118_27	Pfam	PF02592	Putative vitamin uptake transporter	Vut_1
UHGV-0085118_27	NCBIFam	TIGR00697.1	queuosine precursor transporter	NA
UHGV-0085118_27	COG	COG1738	NA	NA
UHGV-0085118_27	HAMAP	MF_02088	Probable queuosine precursor transporter	NA
UHGV-0085118_27	Structural annotation	PF02592, MF_02088, TIGR00697, COG1738	NA	NA
UHGV-0085118_28	PHROG	phrog_6975	NA	unknown function
UHGV-0085118_28	UniRef90	UniRef90_UPI001C0290E2	NA	NA
UHGV-0085118_29	UniRef90	UniRef90_A0A1H4JCA0	Phage terminase, small subunit, putative, P27 family	NA
UHGV-0085118_29	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0085118_29	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0085118_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0085118_30	UniRef90	UniRef90_UPI0013EE3342	terminase large subunit	NA
UHGV-0085118_30	eggNOG-mapper	1504822.CCNO01000015_gene618	Terminase	NA
UHGV-0085118_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0085118_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0085118_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0085118_30	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0085118_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-0085118_31	UniRef90	UniRef90_A0A1Y3UFU2	Phage portal protein	NA
UHGV-0085118_31	eggNOG-mapper	1453501.JELR01000001_gene2530	Phage portal protein	NA
UHGV-0085118_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0085118_31	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0085118_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0085118_32	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0085118_32	PHROG	phrog_2976	head maturation protease	head and packaging
UHGV-0085118_32	UniRef90	UniRef90_A0A7C8BU14	Clp protease ClpP	NA
UHGV-0085118_32	eggNOG-mapper	1307834.BARL01000002_gene1209	Serine dehydrogenase proteinase	NA
UHGV-0085118_32	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0085118_32	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0085118_32	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0085118_33	PHROG	phrog_10	major head protein	head and packaging
UHGV-0085118_33	UniRef90	UniRef90_A0A7C8BQ74	Phage major capsid protein	NA
UHGV-0085118_33	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0085118_33	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0085118_33	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0085118_33	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0085118_35	PHROG	phrog_442	head-tail adaptor	connector
UHGV-0085118_35	Structural annotation	TIGR02215	NA	NA
UHGV-0085118_36	Structural annotation	PF08873	NA	NA
UHGV-0085118_37	Structural annotation	PF20873	NA	NA
UHGV-0085118_38	PHROG	phrog_290	minor tail protein	tail
UHGV-0085118_38	UniRef90	UniRef90_UPI0013EAFFA2	phage tail tube protein	NA
UHGV-0085118_38	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-0085118_38	Structural annotation	PF18906, TIGR01603, COG3498	NA	NA
UHGV-0085118_40	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0085118_41	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0085118_41	UniRef90	UniRef90_A0A1Y3UG21	Phage tail tape measure protein	NA
UHGV-0085118_41	eggNOG-mapper	1504822.CCNO01000015_gene632	NA	NA
UHGV-0085118_41	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0085118_41	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0085118_41	COG	COG5283	Phage-related tail protein	NA
UHGV-0085118_41	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0085118_42	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0085118_42	UniRef90	UniRef90_UPI001302655C	phage tail family protein	NA
UHGV-0085118_42	eggNOG-mapper	1430331.EP10_08870	Phage tail protein	NA
UHGV-0085118_42	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0085118_42	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0085118_42	COG	COG4722	Phage-related protein YomH	NA
UHGV-0085118_42	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0085118_43	PHROG	phrog_12312	virion structural protein	head and packaging
UHGV-0085118_43	UniRef90	UniRef90_A0A1Y4DQT0	Prophage_tail domain-containing protein	NA
UHGV-0085118_43	eggNOG-mapper	445975.COLSTE_02153	Prophage endopeptidase tail	NA
UHGV-0085118_43	COG	COG4926	Phage-related protein	NA
UHGV-0085118_43	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0085118_45	Structural annotation	PF07761	NA	NA
UHGV-0085118_46	PHROG	phrog_21457	NA	unknown function
UHGV-0085118_46	UniRef90	UniRef90_A0A1Y3UKS5	BppU_N domain-containing protein	NA
UHGV-0085118_46	eggNOG-mapper	742722.HMPREF9463_00258	NA	NA
UHGV-0085118_46	Structural annotation	PF10651, NF040788	NA	NA
UHGV-0085118_47	UniRef90	UniRef90_C4F8I6	NA	NA
UHGV-0085118_47	eggNOG-mapper	521003.COLINT_02357	NA	NA
UHGV-0085118_47	Pfam	PF19789	NA	DUF6273
UHGV-0085118_47	Structural annotation	PF19789	NA	NA
UHGV-0085118_48	eggNOG-mapper	521003.COLINT_02358	NA	NA
UHGV-0085118_48	Structural annotation	PF05635, TIGR02436	NA	NA
UHGV-0085118_49	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0085118_49	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0085118_49	UniRef90	UniRef90_C4F8I8	Reverse transcriptase domain-containing protein	NA
UHGV-0085118_49	eggNOG-mapper	521003.COLINT_02359	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0085118_49	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0085118_49	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0085118_49	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0085118_49	Structural annotation	PF00078, TIGR04416, COG3344	NA	NA
UHGV-0085118_50	UniRef90	UniRef90_R7NA43	ATP synthase B chain	NA
UHGV-0085118_52	PHROG	phrog_443	holin	lysis
UHGV-0085118_52	UniRef90	UniRef90_UPI0003F8D3E5	holin	NA
UHGV-0085118_52	eggNOG-mapper	553184.ATORI0001_1165	Putative lactococcus lactis phage r1t holin	NA
UHGV-0085118_52	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0085118_52	Structural annotation	PF16945	NA	NA