UHGV-0085217

Genome information

Genome length 30,655 bps

CDS count 52

Completeness 72.46% (medium-quality)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-0085217
vOTU ID	vOTU-034890
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_152193
BioSample	SAMEA2784503
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.46% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	8.21
Jumbo phage	No

Genome content
Genome length	30,655 bps
GC content	54.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	90.88%
Average CDS length	538.21 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0085217_1	Structural annotation	PF07342	NA	NA
UHGV-0085217_3	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0085217_3	UniRef90	UniRef90_UPI00137B411D	ORF6C domain-containing protein	NA
UHGV-0085217_3	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0085217_3	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0085217_3	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0085217_3	COG	COG3617	Prophage antirepressor	NA
UHGV-0085217_3	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0085217_4	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0085217_4	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0085217_4	eggNOG-mapper	929506.CbC4_1219	NA	NA
UHGV-0085217_4	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0085217_4	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0085217_6	Structural annotation	PF06810	NA	NA
UHGV-0085217_7	PHROG	phrog_544	major head protein	head and packaging
UHGV-0085217_7	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0085217_7	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0085217_7	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0085217_9	PHROG	phrog_17977	NA	unknown function
UHGV-0085217_9	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0085217_9	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0085217_10	Structural annotation	PF13554	NA	NA
UHGV-0085217_11	PHROG	phrog_885	major tail protein	tail
UHGV-0085217_11	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0085217_11	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0085217_14	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0085217_14	UniRef90	UniRef90_A0A6N7TLD3	Tape measure protein	NA
UHGV-0085217_14	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0085217_14	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0085217_14	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0085217_14	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0085217_14	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0085217_15	UniRef90	UniRef90_A0A7G9WF98	MtfA protein	NA
UHGV-0085217_15	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0085217_16	PHROG	phrog_3558	tail protein	tail
UHGV-0085217_16	UniRef90	UniRef90_A0A844DGT5	Prophage_tail domain-containing protein	NA
UHGV-0085217_16	eggNOG-mapper	411460.RUMTOR_00484	Prophage endopeptidase tail	NA
UHGV-0085217_16	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0085217_16	COG	COG4926	Phage-related protein	NA
UHGV-0085217_16	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0085217_18	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0085217_18	UniRef90	UniRef90_A0A1Q6KPN8	NA	NA
UHGV-0085217_18	eggNOG-mapper	718252.FP2_16970	NA	NA
UHGV-0085217_18	Pfam	PF19789	NA	DUF6273
UHGV-0085217_18	Structural annotation	PF19789, PF18911	NA	NA
UHGV-0085217_20	UniRef90	UniRef90_A0A6A8KSZ5	XkdX family protein	NA
UHGV-0085217_20	eggNOG-mapper	718252.FP2_16990	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0085217_20	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0085217_20	Structural annotation	PF09693	NA	NA
UHGV-0085217_21	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-0085217_21	Structural annotation	PF10651	NA	NA
UHGV-0085217_22	PHROG	phrog_17147	NA	unknown function
UHGV-0085217_22	UniRef90	UniRef90_A0A374JQW7	NA	NA
UHGV-0085217_22	eggNOG-mapper	33035.JPJF01000043_gene1001	NA	NA
UHGV-0085217_23	eggNOG-mapper	457412.RSAG_04672	NA	NA
UHGV-0085217_24	PHROG	phrog_1382	NA	unknown function
UHGV-0085217_24	eggNOG-mapper	33035.JPJF01000043_gene998	NA	NA
UHGV-0085217_25	KOfam	K07273	acm; lysozyme	NA
UHGV-0085217_25	PHROG	phrog_291	endolysin	lysis
UHGV-0085217_25	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0085217_25	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0085217_25	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0085217_25	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0085217_25	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-0085217_27	PHROG	phrog_15303	NA	unknown function
UHGV-0085217_29	PHROG	phrog_3754	NA	unknown function
UHGV-0085217_29	eggNOG-mapper	1235790.C805_00054	NA	NA
UHGV-0085217_30	PHROG	phrog_21718	NA	unknown function
UHGV-0085217_30	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0085217_31	PHROG	phrog_22984	NA	unknown function
UHGV-0085217_32	PHROG	phrog_16490	NA	unknown function
UHGV-0085217_32	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0085217_34	PHROG	phrog_20016	NA	unknown function
UHGV-0085217_34	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0085217_34	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0085217_34	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0085217_35	Structural annotation	PF12510	NA	NA
UHGV-0085217_37	KOfam	K14059	int; integrase	NA
UHGV-0085217_37	PHROG	phrog_1	integrase	integration and excision
UHGV-0085217_37	UniRef90	UniRef90_A0A6N7TNQ4	Tyrosine-type recombinase/integrase	NA
UHGV-0085217_37	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0085217_37	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0085217_37	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0085217_37	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0085217_38	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-0085217_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0085217_38	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0085217_41	UniRef90	UniRef90_UPI00047F3EF3	SAP domain-containing protein	NA
UHGV-0085217_41	eggNOG-mapper	1280696.ATVY01000034_gene3237	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	NA
UHGV-0085217_41	Pfam	PF08461	Ribonuclease R winged-helix domain	HTH_12
UHGV-0085217_42	eggNOG-mapper	641112.ACOK01000103_gene519	NA	NA
UHGV-0085217_44	UniRef90	UniRef90_UPI001CBE4822	helix-turn-helix domain-containing protein	NA
UHGV-0085217_44	eggNOG-mapper	411483.FAEPRAA2165_00756	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0085217_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0085217_44	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0085217_44	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0085217_45	UniRef90	UniRef90_A0A1C7FQD9	Transcriptional regulator	NA
UHGV-0085217_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0085217_45	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0085217_48	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0085217_48	UniRef90	UniRef90_UPI00156FBCEE	ORF6C domain-containing protein	NA
UHGV-0085217_48	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0085217_48	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0085217_48	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0085217_48	COG	COG3617	Prophage antirepressor	NA
UHGV-0085217_48	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0085217_49	UniRef90	UniRef90_A0A843GUM6	Membrane lipoprotein lipid attachment site-containing protein	NA
UHGV-0085217_49	eggNOG-mapper	1121865.OMW_01950	NA	NA
UHGV-0085217_49	Structural annotation	PF17516, NF007197	NA	NA
UHGV-0085217_52	PHROG	phrog_4433	NA	unknown function
UHGV-0085217_52	UniRef90	UniRef90_A0A6M5C839	Putative ADP-ribosyltransferase	NA
UHGV-0085217_52	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-0085217_52	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0085217_52	Structural annotation	NF000318	NA	NA