UHGV-0085247

Genome information

Genome length 30,265 bps

CDS count 52

Completeness 100.00% (complete)

geNomad score 0.9763

Prediction confidence Confident

Genome information
Genome ID	UHGV-0085247
vOTU ID	vOTU-045227
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_148740
BioSample	NA
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9763
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.92
Jumbo phage	No

Genome content
Genome length	30,265 bps
GC content	45.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	93.98%
Average CDS length	549.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0085247_1	KOfam	K14059	int; integrase	NA
UHGV-0085247_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0085247_1	UniRef90	UniRef90_A0A3A6E8V2	Site-specific integrase	NA
UHGV-0085247_1	eggNOG-mapper	693746.OBV_25530	Phage integrase family	NA
UHGV-0085247_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0085247_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0085247_1	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0085247_2	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0085247_2	PHROG	phrog_8036	NA	unknown function
UHGV-0085247_2	UniRef90	UniRef90_A0A3E2X7W5	DNA damage-inducible protein D	NA
UHGV-0085247_2	eggNOG-mapper	1514668.JOOA01000001_gene65	BRO family, N-terminal domain	NA
UHGV-0085247_2	AcrCatalog	cluster_17589	NA	NA
UHGV-0085247_2	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-0085247_2	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0085247_2	NCBIFam	NF008573.0	DNA damage-inducible protein D	NA
UHGV-0085247_2	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0085247_2	Structural annotation	PF09669, NF008573, COG3646	NA	NA
UHGV-0085247_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0085247_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0085247_3	UniRef90	UniRef90_A0A412AWI8	HTH cro/C1-type domain-containing protein	NA
UHGV-0085247_3	eggNOG-mapper	97139.C824_00060	Peptidase S24-like	NA
UHGV-0085247_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0085247_3	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0085247_3	Structural annotation	PF00717, PF01381, MF_00015, NF007621, NF041951, COG2932	NA	NA
UHGV-0085247_6	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0085247_6	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0085247_6	UniRef90	UniRef90_A0A4S2A9B1	XRE family transcriptional regulator	NA
UHGV-0085247_6	eggNOG-mapper	97138.C820_00785	Helix-turn-helix XRE-family like proteins	NA
UHGV-0085247_6	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0085247_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0085247_6	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0085247_7	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0085247_11	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0085247_11	UniRef90	UniRef90_A0A0M2NNJ8	NA	NA
UHGV-0085247_11	eggNOG-mapper	1449050.JNLE01000005_gene3946	AAA domain	NA
UHGV-0085247_11	Pfam	PF13479	AAA domain	AAA_24
UHGV-0085247_11	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0085247_12	PHROG	phrog_18107	NA	unknown function
UHGV-0085247_12	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0085247_12	Structural annotation	PF05037	NA	NA
UHGV-0085247_13	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0085247_13	UniRef90	UniRef90_R6N0P8	ERCC4 domain-containing protein	NA
UHGV-0085247_13	eggNOG-mapper	476272.RUMHYD_01740	ERCC4 domain	NA
UHGV-0085247_13	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0085247_13	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0085247_13	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0085247_14	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0085247_14	eggNOG-mapper	1348583.ATLH01000031_gene1927	DnaD domain protein	NA
UHGV-0085247_14	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0085247_15	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0085247_15	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0085247_15	UniRef90	UniRef90_R6P3P1	SF4 helicase domain-containing protein	NA
UHGV-0085247_15	eggNOG-mapper	1256908.HMPREF0373_00663	NA	NA
UHGV-0085247_15	Pfam	PF13481	AAA domain	AAA_25
UHGV-0085247_15	COG	COG0305	Replicative DNA helicase	NA
UHGV-0085247_15	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-0085247_19	KOfam	K21993	fdhC; formate transporter	NA
UHGV-0085247_19	UniRef90	UniRef90_A0A352UP34	Formate/nitrite transporter	NA
UHGV-0085247_19	eggNOG-mapper	1408416.JNJT01000013_gene466	formate transmembrane transporter activity	NA
UHGV-0085247_19	Pfam	PF01226	Formate/nitrite transporter	Form_Nir_trans
UHGV-0085247_19	COG	COG2116	Formate/nitrite transporter FocA, FNT family	NA
UHGV-0085247_22	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0085247_22	UniRef90	UniRef90_A0A412AV49	Restriction alleviation protein, Lar family	NA
UHGV-0085247_22	eggNOG-mapper	397290.C810_01720	Restriction alleviation protein Lar	NA
UHGV-0085247_22	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0085247_22	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0085247_22	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0085247_28	PHROG	phrog_6721	NA	unknown function
UHGV-0085247_28	eggNOG-mapper	428125.CLOLEP_01387	NA	NA
UHGV-0085247_28	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0085247_29	PHROG	phrog_236	nucleotide kinase	other
UHGV-0085247_29	UniRef90	UniRef90_UPI001628F2AC	NA	NA
UHGV-0085247_29	eggNOG-mapper	247490.KSU1_C1482	NA	NA
UHGV-0085247_29	Pfam	PF11753	NA	DUF3310
UHGV-0085247_30	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0085247_30	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0085247_30	UniRef90	UniRef90_R6ILQ3	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0085247_30	eggNOG-mapper	1282887.AUJG01000016_gene1113	NA	NA
UHGV-0085247_30	Pfam	PF00692	dUTPase	dUTPase
UHGV-0085247_30	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0085247_30	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0085247_30	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0085247_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0085247_31	eggNOG-mapper	580331.Thit_1400	NA	NA
UHGV-0085247_31	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0085247_32	PHROG	phrog_2412	NA	unknown function
UHGV-0085247_32	UniRef90	UniRef90_A0A656EI19	NA	NA
UHGV-0085247_32	eggNOG-mapper	742738.HMPREF9460_02504	NA	NA
UHGV-0085247_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0085247_33	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0085247_33	UniRef90	UniRef90_A0A2V2F595	PBSX family phage terminase large subunit	NA
UHGV-0085247_33	eggNOG-mapper	742723.HMPREF9477_00911	Phage terminase large subunit	NA
UHGV-0085247_33	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0085247_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-0085247_33	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0085247_34	PHROG	phrog_533	portal protein	head and packaging
UHGV-0085247_34	UniRef90	UniRef90_A0A3E4LXF1	Phage portal protein	NA
UHGV-0085247_34	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-0085247_34	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0085247_34	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0085247_35	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0085247_35	UniRef90	UniRef90_UPI00191552C0	phage minor capsid protein	NA
UHGV-0085247_35	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0085247_35	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0085247_35	COG	COG2369	NA	NA
UHGV-0085247_35	Structural annotation	PF06152	NA	NA
UHGV-0085247_36	PHROG	phrog_15041	NA	unknown function
UHGV-0085247_37	UniRef90	UniRef90_A0A1B1IN83	Scaffold protein	NA
UHGV-0085247_37	eggNOG-mapper	743719.PaelaDRAFT_5659	NA	NA
UHGV-0085247_38	PHROG	phrog_267	major head protein	head and packaging
UHGV-0085247_38	UniRef90	UniRef90_A0A0D8J2H9	p22 coat protein 5	NA
UHGV-0085247_38	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-0085247_38	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0085247_39	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0085247_40	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0085247_40	UniRef90	UniRef90_UPI00093A08E9	putative minor capsid protein	NA
UHGV-0085247_40	eggNOG-mapper	1449343.JQLQ01000002_gene1330	Minor capsid protein	NA
UHGV-0085247_40	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0085247_40	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-0085247_40	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0085247_41	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0085247_41	UniRef90	UniRef90_A0A6A7K9U7	Minor capsid protein	NA
UHGV-0085247_41	eggNOG-mapper	428125.CLOLEP_00180	Minor capsid protein	NA
UHGV-0085247_41	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0085247_41	Structural annotation	PF11114	NA	NA
UHGV-0085247_42	Structural annotation	PF12691	NA	NA
UHGV-0085247_43	PHROG	phrog_820	major tail protein	tail
UHGV-0085247_43	UniRef90	UniRef90_A0A3A6EPU8	S-l_SbsC_C domain-containing protein	NA
UHGV-0085247_43	eggNOG-mapper	428125.CLOLEP_00178	Belongs to the glycosyl hydrolase family 6	NA
UHGV-0085247_43	COG	COG5492	NA	NA
UHGV-0085247_43	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0085247_44	Structural annotation	PF10666	NA	NA
UHGV-0085247_45	PHROG	phrog_706	NA	unknown function
UHGV-0085247_45	UniRef90	UniRef90_A0A1C6FWZ1	Bacteriophage Gp15 protein	NA
UHGV-0085247_45	eggNOG-mapper	428125.CLOLEP_00176	Bacteriophage Gp15 protein	NA
UHGV-0085247_45	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0085247_45	Structural annotation	PF06854	NA	NA
UHGV-0085247_47	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0085247_47	UniRef90	UniRef90_A7VT93	Phage tail tape measure protein, TP901 family	NA
UHGV-0085247_47	eggNOG-mapper	428125.CLOLEP_01785	tail tape measure protein, TP901	NA
UHGV-0085247_47	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0085247_47	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0085247_47	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0085247_47	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0085247_48	eggNOG-mapper	428125.CLOLEP_00173	NA	NA
UHGV-0085247_48	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0085247_50	PHROG	phrog_297	holin	lysis
UHGV-0085247_50	UniRef90	UniRef90_A7VT88	Holin, phage phi LC3 family	NA
UHGV-0085247_50	eggNOG-mapper	428125.CLOLEP_00169	COG COG5546 Small integral membrane protein	NA
UHGV-0085247_50	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0085247_50	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0085247_50	COG	COG5546	NA	NA
UHGV-0085247_50	Structural annotation	COG5546	NA	NA
UHGV-0085247_51	PHROG	phrog_1863	NA	unknown function
UHGV-0085247_51	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0085247_52	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0085247_52	PHROG	phrog_435	endolysin	lysis
UHGV-0085247_52	UniRef90	UniRef90_A0A413QH71	MurNAc-LAA domain-containing protein	NA
UHGV-0085247_52	eggNOG-mapper	994573.T472_0211265	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0085247_52	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0085247_52	Pfam	PF05036	SPOR domain	SPOR
UHGV-0085247_52	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0085247_52	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA