UHGV-0085310

Genome information

Genome length 34,087 bps

CDS count 51

Completeness 93.22% (high-quality)

geNomad score 0.9783

Prediction confidence Confident

Genome information
Genome ID	UHGV-0085310
vOTU ID	vOTU-069101
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_149774
BioSample	SAMEA2784488
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.22% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9783
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	65.82
Jumbo phage	No

Genome content
Genome length	34,087 bps
GC content	46.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	91.41%
Average CDS length	614.94 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0085310_1	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0085310_1	PHROG	phrog_7	endolysin	lysis
UHGV-0085310_1	UniRef90	UniRef90_C7GBY9	Lysozyme	NA
UHGV-0085310_1	eggNOG-mapper	693746.OBV_20240	Phage lysozyme	NA
UHGV-0085310_1	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0085310_1	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0085310_1	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0085310_1	HAMAP	MF_04110	Endolysin	NA
UHGV-0085310_1	Structural annotation	PF01471, PF00959, MF_04110, COG3772, COG3409	NA	NA
UHGV-0085310_2	PHROG	phrog_443	holin	lysis
UHGV-0085310_2	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0085310_2	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0085310_2	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0085310_2	Structural annotation	PF16945	NA	NA
UHGV-0085310_3	PHROG	phrog_1863	NA	unknown function
UHGV-0085310_3	eggNOG-mapper	665956.HMPREF1032_03922	NA	NA
UHGV-0085310_4	PHROG	phrog_21765	NA	unknown function
UHGV-0085310_4	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0085310_4	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0085310_5	PHROG	phrog_9886	NA	unknown function
UHGV-0085310_5	UniRef90	UniRef90_A0A358PQV6	Prophage_tail domain-containing protein	NA
UHGV-0085310_5	eggNOG-mapper	1235792.C808_03048	Prophage endopeptidase tail	NA
UHGV-0085310_5	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0085310_5	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0085310_5	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0085310_5	COG	COG4926	Phage-related protein	NA
UHGV-0085310_5	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-0085310_6	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0085310_6	UniRef90	UniRef90_A0A174GX45	Phage-related protein	NA
UHGV-0085310_6	eggNOG-mapper	1235792.C808_05378	NA	NA
UHGV-0085310_6	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0085310_7	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0085310_7	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-0085310_7	COG	COG1511	NA	NA
UHGV-0085310_7	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0085310_8	PHROG	phrog_706	NA	unknown function
UHGV-0085310_8	UniRef90	UniRef90_UPI00156EC658	Gp15 family bacteriophage protein	NA
UHGV-0085310_8	eggNOG-mapper	1125725.HMPREF1325_1338	Bacteriophage Gp15 protein	NA
UHGV-0085310_8	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0085310_8	Structural annotation	PF06854	NA	NA
UHGV-0085310_9	Structural annotation	PF16462	NA	NA
UHGV-0085310_10	PHROG	phrog_3099	NA	unknown function
UHGV-0085310_10	eggNOG-mapper	1539298.JO41_08150	NA	NA
UHGV-0085310_11	PHROG	phrog_3266	tail completion	connector
UHGV-0085310_11	Structural annotation	PF12691	NA	NA
UHGV-0085310_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0085310_12	UniRef90	UniRef90_UPI001A9B9821	capsid protein	NA
UHGV-0085310_12	eggNOG-mapper	525255.HMPREF0077_0381	Minor capsid protein	NA
UHGV-0085310_12	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0085310_12	Structural annotation	PF11114	NA	NA
UHGV-0085310_13	PHROG	phrog_3366	NA	unknown function
UHGV-0085310_13	eggNOG-mapper	411462.DORLON_00784	NA	NA
UHGV-0085310_13	Pfam	PF20536	NA	DUF6751
UHGV-0085310_13	Structural annotation	PF20536	NA	NA
UHGV-0085310_14	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0085310_16	PHROG	phrog_422	major head protein	head and packaging
UHGV-0085310_16	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0085310_16	eggNOG-mapper	1235794.C811_01371	NA	NA
UHGV-0085310_16	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0085310_17	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0085310_17	UniRef90	UniRef90_A0A173RNU4	Phage minor structural protein GP20	NA
UHGV-0085310_17	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0085310_17	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0085310_17	Structural annotation	PF06810	NA	NA
UHGV-0085310_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0085310_19	UniRef90	UniRef90_UPI00156DAD02	phage minor capsid protein	NA
UHGV-0085310_19	eggNOG-mapper	545697.HMPREF0216_02846	Phage minor capsid protein 2	NA
UHGV-0085310_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0085310_19	Pfam	PF15644	Papain fold toxin 1, glutamine deamidase	Gln_amidase
UHGV-0085310_19	COG	COG2369	NA	NA
UHGV-0085310_19	Structural annotation	PF06152, PF15887, TIGR01641, COG4307	NA	NA
UHGV-0085310_20	PHROG	phrog_533	portal protein	head and packaging
UHGV-0085310_20	UniRef90	UniRef90_A0A3E3HWH0	Phage portal protein	NA
UHGV-0085310_20	eggNOG-mapper	645991.Sgly_0336	NA	NA
UHGV-0085310_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0085310_20	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0085310_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0085310_21	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0085310_21	UniRef90	UniRef90_R7N5K9	Terminase_3 domain-containing protein	NA
UHGV-0085310_21	eggNOG-mapper	1235790.C805_00040	Phage terminase large subunit	NA
UHGV-0085310_21	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0085310_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0085310_21	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0085310_22	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0085310_22	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0085310_22	UniRef90	UniRef90_UPI0015702ED4	terminase small subunit	NA
UHGV-0085310_22	eggNOG-mapper	1304866.K413DRAFT_3033	terminase, small subunit	NA
UHGV-0085310_22	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0085310_22	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0085310_22	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0085310_22	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0085310_23	KOfam	K02171	blaI; BlaI family transcriptional regulator, penicillinase repressor	NA
UHGV-0085310_23	PHROG	phrog_1077	transcriptional regulator	transcription regulation
UHGV-0085310_23	UniRef90	UniRef90_A0A3R6A4W8	Transcriptional regulator	NA
UHGV-0085310_23	eggNOG-mapper	585394.RHOM_11965	negative regulation of transcription, DNA-templated	NA
UHGV-0085310_23	Pfam	PF03965	Penicillinase repressor	Penicillinase_R
UHGV-0085310_23	COG	COG3682	Transcriptional regulator, CopY/TcrY family	NA
UHGV-0085310_24	eggNOG-mapper	1304866.K413DRAFT_4636	NA	NA
UHGV-0085310_24	Structural annotation	PF17457	NA	NA
UHGV-0085310_25	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0085310_25	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0085310_25	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0085310_25	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0085310_25	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0085310_27	eggNOG-mapper	478749.BRYFOR_07594	NA	NA
UHGV-0085310_28	PHROG	phrog_874	NA	unknown function
UHGV-0085310_28	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0085310_28	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0085310_30	PHROG	phrog_20593	NA	unknown function
UHGV-0085310_31	UniRef90	UniRef90_UPI001C02F342	NA	NA
UHGV-0085310_31	eggNOG-mapper	397290.C810_01514	NA	NA
UHGV-0085310_32	PHROG	phrog_15198	NA	unknown function
UHGV-0085310_32	UniRef90	UniRef90_UPI001F46867E	NA	NA
UHGV-0085310_32	Pfam	PF04448	NA	DUF551
UHGV-0085310_35	PHROG	phrog_15768	NA	unknown function
UHGV-0085310_35	UniRef90	UniRef90_UPI000E525AC6	NA	NA
UHGV-0085310_35	eggNOG-mapper	33035.JPJF01000071_gene4467	NA	NA
UHGV-0085310_35	AcrCatalog	cluster_38323	NA	NA
UHGV-0085310_35	Pfam	PF19808	NA	DUF6291
UHGV-0085310_35	Structural annotation	PF19808	NA	NA
UHGV-0085310_36	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0085310_36	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0085310_36	UniRef90	UniRef90_A0A1Q6UYH5	Endodeoxyribonuclease RusA	NA
UHGV-0085310_36	eggNOG-mapper	910314.HMPREF9220_1104	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0085310_36	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0085310_36	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0085310_36	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0085310_37	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0085310_37	UniRef90	UniRef90_A0A3R6DHY3	Bro-N domain-containing protein	NA
UHGV-0085310_37	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0085310_37	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0085310_37	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0085310_37	COG	COG3617	Prophage antirepressor	NA
UHGV-0085310_38	PHROG	phrog_398	NA	unknown function
UHGV-0085310_38	UniRef90	UniRef90_UPI00068C968F	putative HNHc nuclease	NA
UHGV-0085310_38	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0085310_38	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0085310_38	Structural annotation	PF16784	NA	NA
UHGV-0085310_39	PHROG	phrog_14970	NA	unknown function
UHGV-0085310_39	eggNOG-mapper	1235798.C817_00385	double-strand break repair protein	NA
UHGV-0085310_39	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0085310_39	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0085310_39	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0085310_43	Structural annotation	PF11127	NA	NA
UHGV-0085310_44	PHROG	phrog_4621	NA	unknown function
UHGV-0085310_44	eggNOG-mapper	1415774.U728_1126	NA	NA
UHGV-0085310_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0085310_46	UniRef90	UniRef90_UPI001C015CA8	helix-turn-helix domain-containing protein	NA
UHGV-0085310_46	eggNOG-mapper	1304866.K413DRAFT_3003	addiction module antidote protein HigA	NA
UHGV-0085310_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0085310_46	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0085310_47	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0085310_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0085310_47	UniRef90	UniRef90_UPI001C00E09B	helix-turn-helix transcriptional regulator	NA
UHGV-0085310_47	eggNOG-mapper	476272.RUMHYD_02826	TRANSCRIPTIONal	NA
UHGV-0085310_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0085310_47	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0085310_47	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0085310_48	PHROG	phrog_20886	NA	unknown function
UHGV-0085310_48	UniRef90	UniRef90_UPI000C757FC8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0085310_48	eggNOG-mapper	476272.RUMHYD_02825	NA	NA
UHGV-0085310_48	Structural annotation	PF06114	NA	NA
UHGV-0085310_50	Structural annotation	TIGR04165, COG3478	NA	NA
UHGV-0085310_51	KOfam	K14059	int; integrase	NA
UHGV-0085310_51	PHROG	phrog_1	integrase	integration and excision
UHGV-0085310_51	UniRef90	UniRef90_D4L3N3	Site-specific recombinase XerD	NA
UHGV-0085310_51	eggNOG-mapper	397290.C810_05149	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0085310_51	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0085310_51	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0085310_51	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0085310_51	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA