UHGV-0085366

Genome information

Genome length 30,879 bps

CDS count 50

Completeness 91.30% (high-quality)

geNomad score 0.9823

Prediction confidence Confident

Genome information
Genome ID	UHGV-0085366
vOTU ID	vOTU-061054
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_142774
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.30% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9823
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.74
Jumbo phage	No

Genome content
Genome length	30,879 bps
GC content	42.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	92.05%
Average CDS length	571.50 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0085366_1	PHROG	phrog_7854	endolysin	lysis
UHGV-0085366_1	UniRef90	UniRef90_A0A373SW30	MurNAc-LAA domain-containing protein	NA
UHGV-0085366_1	eggNOG-mapper	411462.DORLON_00764	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0085366_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0085366_1	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0085366_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0085366_1	Structural annotation	PF01520, TIGR02883, COG0860, COG5263	NA	NA
UHGV-0085366_2	PHROG	phrog_18218	NA	unknown function
UHGV-0085366_2	UniRef90	UniRef90_A0A373SUI3	Ribonuclease	NA
UHGV-0085366_2	eggNOG-mapper	658655.HMPREF0988_02546	NA	NA
UHGV-0085366_2	Structural annotation	PF06946	NA	NA
UHGV-0085366_3	PHROG	phrog_1863	NA	unknown function
UHGV-0085366_3	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0085366_5	PHROG	phrog_13589	NA	unknown function
UHGV-0085366_5	eggNOG-mapper	411460.RUMTOR_01324	NA	NA
UHGV-0085366_6	PHROG	phrog_13589	NA	unknown function
UHGV-0085366_6	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0085366_7	PHROG	phrog_31538	NA	unknown function
UHGV-0085366_7	eggNOG-mapper	742740.HMPREF9474_02274	NA	NA
UHGV-0085366_8	PHROG	phrog_15594	NA	unknown function
UHGV-0085366_8	eggNOG-mapper	862969.SCI_1223	NA	NA
UHGV-0085366_8	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-0085366_9	PHROG	phrog_9994	NA	unknown function
UHGV-0085366_9	UniRef90	UniRef90_A0A845KHH7	H_lectin domain-containing protein	NA
UHGV-0085366_9	eggNOG-mapper	742723.HMPREF9477_00894	NA	NA
UHGV-0085366_9	Structural annotation	PF20747, PF17900	NA	NA
UHGV-0085366_10	PHROG	phrog_538	minor tail protein	tail
UHGV-0085366_10	UniRef90	UniRef90_UPI001D071BA3	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0085366_10	eggNOG-mapper	665950.HMPREF1025_02520	NA	NA
UHGV-0085366_10	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0085366_11	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0085366_11	eggNOG-mapper	411461.DORFOR_01176	NA	NA
UHGV-0085366_11	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0085366_12	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0085366_12	UniRef90	UniRef90_A0A374BV79	PhageMin_Tail domain-containing protein	NA
UHGV-0085366_12	eggNOG-mapper	428125.CLOLEP_00174	tail tape measure protein, TP901	NA
UHGV-0085366_12	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0085366_12	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0085366_12	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0085366_13	PHROG	phrog_706	NA	unknown function
UHGV-0085366_13	UniRef90	UniRef90_UPI0008360889	Gp15 family bacteriophage protein	NA
UHGV-0085366_13	eggNOG-mapper	428125.CLOLEP_00176	Bacteriophage Gp15 protein	NA
UHGV-0085366_13	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0085366_13	Structural annotation	PF06854	NA	NA
UHGV-0085366_14	Structural annotation	PF10666	NA	NA
UHGV-0085366_15	PHROG	phrog_820	major tail protein	tail
UHGV-0085366_15	UniRef90	UniRef90_A0A3R6YSE8	Capsid protein	NA
UHGV-0085366_15	eggNOG-mapper	428125.CLOLEP_00178	Belongs to the glycosyl hydrolase family 6	NA
UHGV-0085366_15	COG	COG5492	NA	NA
UHGV-0085366_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0085366_16	UniRef90	UniRef90_UPI001D058B7D	minor capsid protein	NA
UHGV-0085366_16	Structural annotation	PF12691	NA	NA
UHGV-0085366_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0085366_17	UniRef90	UniRef90_UPI000470876F	minor capsid protein	NA
UHGV-0085366_17	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0085366_17	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0085366_18	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0085366_18	UniRef90	UniRef90_UPI001915CA83	putative minor capsid protein	NA
UHGV-0085366_18	eggNOG-mapper	1449343.JQLQ01000002_gene1330	Minor capsid protein	NA
UHGV-0085366_18	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0085366_18	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-0085366_18	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0085366_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0085366_19	UniRef90	UniRef90_R5RS10	Protein gp8	NA
UHGV-0085366_19	eggNOG-mapper	935836.JAEL01000086_gene50	NA	NA
UHGV-0085366_20	PHROG	phrog_267	major head protein	head and packaging
UHGV-0085366_20	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0085366_20	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-0085366_20	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0085366_21	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0085366_22	KOfam	K07584	NA	NA
UHGV-0085366_22	PHROG	phrog_4478	peptidase	other
UHGV-0085366_22	UniRef90	UniRef90_A0A3E4LX07	Ribosomal-processing cysteine protease Prp	NA
UHGV-0085366_22	eggNOG-mapper	476272.RUMHYD_02852	Cysteine protease Prp	NA
UHGV-0085366_22	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0085366_22	COG	COG2868	NA	NA
UHGV-0085366_22	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0085366_23	PHROG	phrog_27009	NA	unknown function
UHGV-0085366_23	eggNOG-mapper	411460.RUMTOR_01296	NA	NA
UHGV-0085366_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0085366_24	UniRef90	UniRef90_UPI00191552C0	phage minor capsid protein	NA
UHGV-0085366_24	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0085366_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0085366_24	COG	COG2369	NA	NA
UHGV-0085366_24	Structural annotation	PF06152	NA	NA
UHGV-0085366_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0085366_25	UniRef90	UniRef90_A0A3E4LXF1	Phage portal protein	NA
UHGV-0085366_25	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-0085366_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0085366_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0085366_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0085366_26	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0085366_26	UniRef90	UniRef90_A0A3E4LWZ3	PBSX family phage terminase large subunit	NA
UHGV-0085366_26	eggNOG-mapper	592031.GCWU000322_00074	Phage terminase large subunit	NA
UHGV-0085366_26	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0085366_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0085366_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0085366_26	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0085366_27	PHROG	phrog_2412	NA	unknown function
UHGV-0085366_27	UniRef90	UniRef90_A0A4V1EFZ3	NA	NA
UHGV-0085366_27	eggNOG-mapper	742765.HMPREF9457_02118	NA	NA
UHGV-0085366_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0085366_28	UniRef90	UniRef90_A0A373STV4	NA	NA
UHGV-0085366_28	eggNOG-mapper	411461.DORFOR_00754	sigma factor activity	NA
UHGV-0085366_28	Pfam	PF07374	NA	DUF1492
UHGV-0085366_28	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0085366_28	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0085366_30	PHROG	phrog_20593	NA	unknown function
UHGV-0085366_31	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0085366_31	UniRef90	UniRef90_A0A3G8F4C5	HTH psq-type domain-containing protein	NA
UHGV-0085366_31	eggNOG-mapper	1460635.JCM19038_3433	NA	NA
UHGV-0085366_32	UniRef90	UniRef90_A0A1Q6J917	NA	NA
UHGV-0085366_32	eggNOG-mapper	1256908.HMPREF0373_00667	NA	NA
UHGV-0085366_32	Pfam	PF04448	NA	DUF551
UHGV-0085366_34	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0085366_34	UniRef90	UniRef90_UPI0018AAF628	NA	NA
UHGV-0085366_34	eggNOG-mapper	411461.DORFOR_00014	NA	NA
UHGV-0085366_34	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0085366_34	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0085366_34	Structural annotation	PF14297	NA	NA
UHGV-0085366_35	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0085366_35	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0085366_35	UniRef90	UniRef90_UPI001D0408BC	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0085366_35	eggNOG-mapper	411461.DORFOR_00015	Endodeoxyribonuclease RusA	NA
UHGV-0085366_35	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0085366_35	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0085366_35	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0085366_36	PHROG	phrog_1029	NA	unknown function
UHGV-0085366_36	eggNOG-mapper	411461.DORFOR_00016	NA	NA
UHGV-0085366_36	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0085366_37	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0085366_37	eggNOG-mapper	411461.DORFOR_00017	NA	NA
UHGV-0085366_38	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0085366_38	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0085366_38	UniRef90	UniRef90_UPI0018AC627C	recombinase RecT	NA
UHGV-0085366_38	eggNOG-mapper	742765.HMPREF9457_02107	RecT family	NA
UHGV-0085366_38	Pfam	PF03837	RecT family	RecT
UHGV-0085366_38	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0085366_38	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0085366_38	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0085366_39	PHROG	phrog_674	NA	unknown function
UHGV-0085366_39	UniRef90	UniRef90_UPI0018ABB762	NA	NA
UHGV-0085366_39	eggNOG-mapper	742765.HMPREF9457_02106	NA	NA
UHGV-0085366_39	Pfam	PF07083	NA	DUF1351
UHGV-0085366_39	Structural annotation	PF07083	NA	NA
UHGV-0085366_40	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0085366_40	UniRef90	UniRef90_UPI001D0490EC	YqaJ viral recombinase family protein	NA
UHGV-0085366_40	eggNOG-mapper	742765.HMPREF9457_02105	YqaJ viral recombinase family	NA
UHGV-0085366_40	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0085366_40	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0085366_40	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0085366_40	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0085366_43	UniRef90	UniRef90_A0A1Q6J9H1	HTH cro/C1-type domain-containing protein	NA
UHGV-0085366_43	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0085366_43	Structural annotation	PF21291, MF_00535, NF007257, COG3655	NA	NA
UHGV-0085366_44	Structural annotation	PF20037, COG3212	NA	NA
UHGV-0085366_45	PHROG	phrog_585	NA	unknown function
UHGV-0085366_45	UniRef90	UniRef90_UPI001897C570	NA	NA
UHGV-0085366_45	eggNOG-mapper	438780.D2KRD9_9CAUD	NA	NA
UHGV-0085366_45	Pfam	PF10711	NA	DUF2513
UHGV-0085366_45	Structural annotation	PF10711, TIGR03433, COG1695	NA	NA
UHGV-0085366_46	PHROG	phrog_28456	NA	unknown function
UHGV-0085366_48	UniRef90	UniRef90_UPI001D096ABA	helix-turn-helix transcriptional regulator	NA
UHGV-0085366_48	eggNOG-mapper	1235798.C817_04758	NA	NA
UHGV-0085366_48	Structural annotation	PF13443, NF010465, COG3655	NA	NA
UHGV-0085366_49	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0085366_49	UniRef90	UniRef90_A0A2V1JR76	HTH cro/C1-type domain-containing protein	NA
UHGV-0085366_49	eggNOG-mapper	1235798.C817_04757	NA	NA
UHGV-0085366_49	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0085366_49	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0085366_49	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0085366_50	PHROG	phrog_87	metallo-protease	other
UHGV-0085366_50	UniRef90	UniRef90_UPI001D01270F	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0085366_50	eggNOG-mapper	742765.HMPREF9457_02093	IrrE N-terminal-like domain	NA
UHGV-0085366_50	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0085366_50	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0085366_50	Structural annotation	PF06114, COG2856	NA	NA