UHGV-0085415

Genome information

Genome length 39,309 bps

CDS count 49

Completeness 99.90% (high-quality)

geNomad score 0.9713

Prediction confidence Confident

Genome information
Genome ID	UHGV-0085415
vOTU ID	vOTU-010270
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_162257
BioSample	SAMEA3136739
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9713
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.7
Jumbo phage	No

Genome content
Genome length	39,309 bps
GC content	41.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	92.41%
Average CDS length	743.88 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0085415_1	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0085415_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0085415_1	UniRef90	UniRef90_A0A1C5QQD0	Transcriptional regulator, y4mF family	NA
UHGV-0085415_1	eggNOG-mapper	556261.HMPREF0240_01268	Helix-turn-helix	NA
UHGV-0085415_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0085415_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0085415_1	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0085415_2	UniRef90	UniRef90_UPI00156EFEB1	helix-turn-helix domain-containing protein	NA
UHGV-0085415_2	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-0085415_2	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0085415_4	PHROG	phrog_9607	NA	unknown function
UHGV-0085415_4	eggNOG-mapper	1378168.N510_03161	NA	NA
UHGV-0085415_4	Structural annotation	PF02883, MF_00791, NF012200, COG3354	NA	NA
UHGV-0085415_6	PHROG	phrog_585	NA	unknown function
UHGV-0085415_6	UniRef90	UniRef90_A0A7G9G8R3	NA	NA
UHGV-0085415_6	eggNOG-mapper	411465.PEPMIC_00712	NA	NA
UHGV-0085415_6	Pfam	PF10711	NA	DUF2513
UHGV-0085415_6	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0085415_8	PHROG	phrog_6058	NA	unknown function
UHGV-0085415_8	UniRef90	UniRef90_A0A4Q7P3C7	Prolyl-tRNA synthetase	NA
UHGV-0085415_8	eggNOG-mapper	742733.HMPREF9469_05094	NA	NA
UHGV-0085415_10	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0085415_10	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0085415_10	UniRef90	UniRef90_A0A415L586	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0085415_10	eggNOG-mapper	411459.RUMOBE_01038	COG COG4570 Holliday junction resolvase	NA
UHGV-0085415_10	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0085415_10	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0085415_10	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0085415_11	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0085415_11	UniRef90	UniRef90_A0A415L5F5	NA	NA
UHGV-0085415_11	eggNOG-mapper	411461.DORFOR_00014	NA	NA
UHGV-0085415_11	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0085415_11	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0085415_11	Structural annotation	PF14297	NA	NA
UHGV-0085415_12	eggNOG-mapper	411459.RUMOBE_00951	NA	NA
UHGV-0085415_13	PHROG	phrog_8470	NA	unknown function
UHGV-0085415_13	UniRef90	UniRef90_UPI001D08730A	PcfJ domain-containing protein	NA
UHGV-0085415_13	eggNOG-mapper	97139.C824_00039	PcfJ-like protein	NA
UHGV-0085415_13	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0085415_13	Structural annotation	PF14284	NA	NA
UHGV-0085415_14	PHROG	phrog_15982	NA	unknown function
UHGV-0085415_14	UniRef90	UniRef90_UPI001D0741A0	NA	NA
UHGV-0085415_14	eggNOG-mapper	411459.RUMOBE_00949	NA	NA
UHGV-0085415_14	Pfam	PF12961	NA	DUF3850
UHGV-0085415_14	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0085415_14	Structural annotation	PF12961, PF11300, MF_00771, NF002615, COG2411	NA	NA
UHGV-0085415_15	PHROG	phrog_15198	NA	unknown function
UHGV-0085415_15	UniRef90	UniRef90_UPI001D08C68F	NA	NA
UHGV-0085415_15	Pfam	PF04448	NA	DUF551
UHGV-0085415_18	PHROG	phrog_19011	NA	unknown function
UHGV-0085415_18	Structural annotation	PF18359, COG4466	NA	NA
UHGV-0085415_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0085415_19	eggNOG-mapper	1304866.K413DRAFT_3028	NA	NA
UHGV-0085415_19	Structural annotation	PF04545	NA	NA
UHGV-0085415_21	UniRef90	UniRef90_A0A416J0I8	Chemotaxis protein	NA
UHGV-0085415_21	eggNOG-mapper	1304866.K413DRAFT_0813	NA	NA
UHGV-0085415_21	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-0085415_22	UniRef90	UniRef90_A0A174XSZ8	Prophage LambdaBa04, GP54	NA
UHGV-0085415_22	eggNOG-mapper	573061.Clocel_2442	HNH endonuclease	NA
UHGV-0085415_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0085415_23	PHROG	phrog_1066	NA	unknown function
UHGV-0085415_23	eggNOG-mapper	1235793.C809_01916	NA	NA
UHGV-0085415_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0085415_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0085415_24	UniRef90	UniRef90_A0A4V2F7T1	Phage terminase large subunit-like protein	NA
UHGV-0085415_24	eggNOG-mapper	318464.IO99_13765	Terminase	NA
UHGV-0085415_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0085415_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0085415_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0085415_24	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0085415_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0085415_25	UniRef90	UniRef90_UPI001EE04D35	phage portal protein	NA
UHGV-0085415_25	eggNOG-mapper	1235793.C809_01918	Phage portal protein	NA
UHGV-0085415_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0085415_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0085415_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0085415_26	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0085415_26	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0085415_26	UniRef90	UniRef90_A0A4Q7PKT6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0085415_26	eggNOG-mapper	1235793.C809_01919	Clp protease	NA
UHGV-0085415_26	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0085415_26	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0085415_26	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0085415_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-0085415_27	UniRef90	UniRef90_UPI001D065474	phage major capsid protein	NA
UHGV-0085415_27	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0085415_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0085415_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0085415_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0085415_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0085415_28	PHROG	phrog_5223	neck protein	connector
UHGV-0085415_28	UniRef90	UniRef90_H6LCB7	Putative prophage LambdaBa04 DNA packaging protein	NA
UHGV-0085415_28	eggNOG-mapper	931626.Awo_c31020	NA	NA
UHGV-0085415_28	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0085415_29	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0085415_30	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0085415_30	UniRef90	UniRef90_UPI0013905FA6	HK97 gp10 family phage protein	NA
UHGV-0085415_30	eggNOG-mapper	97139.C824_05967	Phage protein, HK97 gp10 family	NA
UHGV-0085415_30	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0085415_30	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0085415_30	Structural annotation	TIGR01725	NA	NA
UHGV-0085415_31	PHROG	phrog_78	tail terminator	connector
UHGV-0085415_31	eggNOG-mapper	1286171.EAL2_c05940	NA	NA
UHGV-0085415_31	Structural annotation	PF05657	NA	NA
UHGV-0085415_32	PHROG	phrog_88	major tail protein	tail
UHGV-0085415_32	UniRef90	UniRef90_A5ZPL3	Phage major tail protein, phi13 family	NA
UHGV-0085415_32	eggNOG-mapper	411459.RUMOBE_00930	NA	NA
UHGV-0085415_32	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0085415_32	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0085415_33	eggNOG-mapper	1235792.C808_03058	NA	NA
UHGV-0085415_33	Structural annotation	PF11836	NA	NA
UHGV-0085415_35	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-0085415_35	PHROG	phrog_5218	NA	unknown function
UHGV-0085415_35	UniRef90	UniRef90_A0A174CPF9	Phage-related minor tail protein	NA
UHGV-0085415_35	eggNOG-mapper	1235792.C808_03050	Phage-related minor tail protein	NA
UHGV-0085415_35	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0085415_35	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0085415_35	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0085415_35	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0085415_36	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0085415_36	UniRef90	UniRef90_A5ZPK8	Putative phage tail component domain protein	NA
UHGV-0085415_36	eggNOG-mapper	411459.RUMOBE_00925	phage tail	NA
UHGV-0085415_36	Pfam	PF20753	Phage tail C-terminal domain	DUF6558_C
UHGV-0085415_36	COG	COG4722	Phage-related protein YomH	NA
UHGV-0085415_36	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-0085415_37	PHROG	phrog_1401	NA	unknown function
UHGV-0085415_37	eggNOG-mapper	272562.CA_C1880	NA	NA
UHGV-0085415_37	Structural annotation	PF07761	NA	NA
UHGV-0085415_38	PHROG	phrog_18110	NA	unknown function
UHGV-0085415_38	UniRef90	UniRef90_A5ZPK6	Phage minor structural protein, N-terminal domain protein	NA
UHGV-0085415_38	eggNOG-mapper	411459.RUMOBE_00923	NA	NA
UHGV-0085415_38	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0085415_38	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0085415_38	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0085415_38	COG	COG4926	Phage-related protein	NA
UHGV-0085415_39	KOfam	K07495	K07495; putative transposase	NA
UHGV-0085415_39	PHROG	phrog_4555	NA	unknown function
UHGV-0085415_39	UniRef90	UniRef90_A0A415L5S8	IS4 family transposase	NA
UHGV-0085415_39	eggNOG-mapper	642492.Clole_1252	NA	NA
UHGV-0085415_39	Pfam	PF01609	Transposase DDE domain	DDE_Tnp_1
UHGV-0085415_39	NCBIFam	NF033592.1	IS4 family transposase	NA
UHGV-0085415_39	COG	COG3385	IS4 transposase InsG	NA
UHGV-0085415_39	Structural annotation	PF01609, MF_00582, NF033592, COG5421	NA	NA
UHGV-0085415_40	eggNOG-mapper	411459.RUMOBE_00923	NA	NA
UHGV-0085415_40	COG	COG4926	Phage-related protein	NA
UHGV-0085415_41	eggNOG-mapper	411459.RUMOBE_04220	Histidine kinase	NA
UHGV-0085415_41	COG	COG0642	Signal transduction histidine kinase	NA
UHGV-0085415_42	PHROG	phrog_16164	NA	unknown function
UHGV-0085415_42	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-0085415_42	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0085415_43	eggNOG-mapper	457412.RSAG_01112	NA	NA
UHGV-0085415_45	PHROG	phrog_28526	NA	unknown function
UHGV-0085415_45	UniRef90	UniRef90_UPI00156FE2AD	NA	NA
UHGV-0085415_45	eggNOG-mapper	411462.DORLON_00769	NA	NA
UHGV-0085415_46	UniRef90	UniRef90_A0A417CS53	Peptidase S74 domain-containing protein	NA
UHGV-0085415_46	eggNOG-mapper	411459.RUMOBE_00913	NA	NA
UHGV-0085415_47	PHROG	phrog_199	holin	lysis
UHGV-0085415_47	UniRef90	UniRef90_UPI00033C89C4	phage holin family protein	NA
UHGV-0085415_47	eggNOG-mapper	411462.DORLON_00766	Bacteriophage holin family	NA
UHGV-0085415_47	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0085415_47	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0085415_47	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0085415_47	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0085415_48	KOfam	K07273	acm; lysozyme	NA
UHGV-0085415_48	PHROG	phrog_6745	endolysin	lysis
UHGV-0085415_48	UniRef90	UniRef90_A0A412ERJ4	NlpC/P60 domain-containing protein (Fragment)	NA
UHGV-0085415_48	eggNOG-mapper	457412.RSAG_00790	CHAP domain	NA
UHGV-0085415_48	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0085415_48	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0085415_48	Structural annotation	PF01183, PF05382, NF003627, TIGR02219, COG3757	NA	NA
UHGV-0085415_49	KOfam	K07404	pgl; 6-phosphogluconolactonase [EC:3.1.1.31]	NA
UHGV-0085415_49	PHROG	phrog_19989	NA	unknown function
UHGV-0085415_49	UniRef90	UniRef90_A0A6N9LDN5	Beta-propeller fold lactonase family protein	NA
UHGV-0085415_49	eggNOG-mapper	411459.RUMOBE_04000	NA	NA
UHGV-0085415_49	Pfam	PF10282	Lactonase, 7-bladed beta-propeller	Lactonase
UHGV-0085415_49	COG	COG2706	6-phosphogluconolactonase, cycloisomerase 2 family	NA