UHGV-0085419

Genome information

Genome length 39,384 bps

CDS count 58

Completeness 97.40% (high-quality)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0085419
vOTU ID	vOTU-063213
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_166852
BioSample	SAMEA3136744
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.40% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	76.01
Jumbo phage	No

Genome content
Genome length	39,384 bps
GC content	41.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	92.28%
Average CDS length	630.31 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0085419_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0085419_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0085419_1	UniRef90	UniRef90_A0A414S2T5	Recombinase family protein	NA
UHGV-0085419_1	eggNOG-mapper	411462.DORLON_00823	Resolvase, N terminal domain	NA
UHGV-0085419_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0085419_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0085419_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0085419_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0085419_1	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-0085419_2	eggNOG-mapper	411470.RUMGNA_03228	NA	NA
UHGV-0085419_3	Structural annotation	PF21170, NF040959, COG1729	NA	NA
UHGV-0085419_4	PHROG	phrog_87	metallo-protease	other
UHGV-0085419_4	UniRef90	UniRef90_UPI001570E616	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0085419_4	eggNOG-mapper	742765.HMPREF9457_02093	IrrE N-terminal-like domain	NA
UHGV-0085419_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0085419_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0085419_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0085419_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0085419_5	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0085419_5	UniRef90	UniRef90_UPI001899F3FA	transcriptional regulator	NA
UHGV-0085419_5	eggNOG-mapper	411470.RUMGNA_03230	sequence-specific DNA binding	NA
UHGV-0085419_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0085419_5	Structural annotation	PF01381, NF041951	NA	NA
UHGV-0085419_6	UniRef90	UniRef90_UPI00189C20AA	NA	NA
UHGV-0085419_6	eggNOG-mapper	411470.RUMGNA_03231	NA	NA
UHGV-0085419_6	Pfam	PF05339	NA	DUF739
UHGV-0085419_6	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0085419_6	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0085419_7	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0085419_7	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0085419_7	UniRef90	UniRef90_UPI001897DB88	phage antirepressor KilAC domain-containing protein	NA
UHGV-0085419_7	eggNOG-mapper	1423758.BN55_09165	BRO family, N-terminal domain	NA
UHGV-0085419_7	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0085419_7	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0085419_7	COG	COG3617	Prophage antirepressor	NA
UHGV-0085419_7	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0085419_8	Structural annotation	PF05339, MF_00535, NF002773, COG1476	NA	NA
UHGV-0085419_11	eggNOG-mapper	411462.DORLON_00814	NA	NA
UHGV-0085419_12	PHROG	phrog_3777	NA	unknown function
UHGV-0085419_12	UniRef90	UniRef90_A0A6L8RVX0	NA	NA
UHGV-0085419_12	eggNOG-mapper	411462.DORLON_00813	NA	NA
UHGV-0085419_12	Pfam	PF12957	NA	DUF3846
UHGV-0085419_12	Structural annotation	PF12957	NA	NA
UHGV-0085419_13	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0085419_14	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0085419_14	UniRef90	UniRef90_A0A564SBZ1	Siphovirus Gp157	NA
UHGV-0085419_14	eggNOG-mapper	1256908.HMPREF0373_00657	Siphovirus Gp157	NA
UHGV-0085419_14	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0085419_14	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0085419_15	Structural annotation	PF14902	NA	NA
UHGV-0085419_16	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0085419_16	UniRef90	UniRef90_A0A391PHL2	ATP-binding protein	NA
UHGV-0085419_16	eggNOG-mapper	1256908.HMPREF0373_00658	AAA domain	NA
UHGV-0085419_16	Pfam	PF13479	AAA domain	AAA_24
UHGV-0085419_16	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0085419_17	PHROG	phrog_18107	NA	unknown function
UHGV-0085419_17	eggNOG-mapper	1256908.HMPREF0373_00659	NA	NA
UHGV-0085419_17	Structural annotation	PF05037	NA	NA
UHGV-0085419_18	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0085419_18	UniRef90	UniRef90_A0A391NZM9	ERCC4 domain-containing protein	NA
UHGV-0085419_18	eggNOG-mapper	1256908.HMPREF0373_00660	NA	NA
UHGV-0085419_18	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0085419_18	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0085419_19	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0085419_19	PHROG	phrog_11992	NA	unknown function
UHGV-0085419_19	UniRef90	UniRef90_A0A6L8RVS7	DNA primase	NA
UHGV-0085419_19	eggNOG-mapper	397290.C810_05175	CHC2 zinc finger	NA
UHGV-0085419_19	PADLOC	drt-UG29	DRT	DRT
UHGV-0085419_19	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0085419_19	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0085419_19	Structural annotation	PF01807	NA	NA
UHGV-0085419_20	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0085419_20	UniRef90	UniRef90_A0A6N9JUH3	NA	NA
UHGV-0085419_20	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-0085419_20	Pfam	PF06048	NA	DUF927
UHGV-0085419_20	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0085419_20	COG	COG5519	NA	NA
UHGV-0085419_20	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0085419_22	PHROG	phrog_15077	NA	unknown function
UHGV-0085419_22	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-0085419_23	PHROG	phrog_15077	NA	unknown function
UHGV-0085419_23	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-0085419_24	PHROG	phrog_26445	NA	unknown function
UHGV-0085419_24	UniRef90	UniRef90_A0A412MF67	DNA-binding response regulator	NA
UHGV-0085419_24	eggNOG-mapper	411461.DORFOR_00012	NA	NA
UHGV-0085419_24	Structural annotation	PF13384, MF_00475, TIGR02531, COG1710	NA	NA
UHGV-0085419_25	PHROG	phrog_15198	NA	unknown function
UHGV-0085419_25	UniRef90	UniRef90_A0A414S2X3	NA	NA
UHGV-0085419_25	eggNOG-mapper	411462.DORLON_00804	NA	NA
UHGV-0085419_25	Pfam	PF04448	NA	DUF551
UHGV-0085419_26	PHROG	phrog_15198	NA	unknown function
UHGV-0085419_26	UniRef90	UniRef90_UPI00189B723A	NA	NA
UHGV-0085419_26	eggNOG-mapper	658655.HMPREF0988_00863	NA	NA
UHGV-0085419_28	Structural annotation	PF10842, MF_00436, NF037951, COG1923	NA	NA
UHGV-0085419_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0085419_30	UniRef90	UniRef90_A0A6L8RVY0	Sigma70_r4 domain-containing protein	NA
UHGV-0085419_30	eggNOG-mapper	411461.DORFOR_00754	sigma factor activity	NA
UHGV-0085419_30	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0085419_30	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0085419_30	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0085419_33	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0085419_33	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0085419_33	UniRef90	UniRef90_UPI001111365D	terminase small subunit	NA
UHGV-0085419_33	eggNOG-mapper	608534.GCWU000341_02298	Terminase small subunit	NA
UHGV-0085419_33	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0085419_33	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0085419_33	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0085419_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0085419_34	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0085419_34	UniRef90	UniRef90_UPI001897BF4F	PBSX family phage terminase large subunit	NA
UHGV-0085419_34	eggNOG-mapper	476272.RUMHYD_02845	Phage terminase, large subunit, PBSX family	NA
UHGV-0085419_34	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0085419_34	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0085419_34	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0085419_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-0085419_34	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0085419_35	PHROG	phrog_64	portal protein	head and packaging
UHGV-0085419_35	UniRef90	UniRef90_UPI0015D3CC14	phage portal protein	NA
UHGV-0085419_35	eggNOG-mapper	1232453.BAIF02000011_gene3353	Phage portal protein, SPP1 family	NA
UHGV-0085419_35	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0085419_35	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0085419_35	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0085419_36	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0085419_36	UniRef90	UniRef90_UPI00111156C2	minor capsid protein	NA
UHGV-0085419_36	eggNOG-mapper	476272.RUMHYD_02847	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0085419_36	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0085419_36	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0085419_36	COG	COG2369	NA	NA
UHGV-0085419_37	Structural annotation	PF11344	NA	NA
UHGV-0085419_38	KOfam	K07584	NA	NA
UHGV-0085419_38	PHROG	phrog_4478	peptidase	other
UHGV-0085419_38	UniRef90	UniRef90_UPI00156DEF22	ribosomal-processing cysteine protease Prp	NA
UHGV-0085419_38	eggNOG-mapper	1232453.BAIF02000011_gene3357	Cysteine protease Prp	NA
UHGV-0085419_38	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0085419_38	COG	COG2868	NA	NA
UHGV-0085419_38	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0085419_39	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0085419_39	UniRef90	UniRef90_UPI001D0541EB	NA	NA
UHGV-0085419_39	eggNOG-mapper	1232453.BAIF02000011_gene3358	NA	NA
UHGV-0085419_39	Pfam	PF14265	NA	DUF4355
UHGV-0085419_39	Structural annotation	PF14265	NA	NA
UHGV-0085419_40	PHROG	phrog_544	major head protein	head and packaging
UHGV-0085419_40	UniRef90	UniRef90_A0A173ZE35	S-l_SbsC_C domain-containing protein	NA
UHGV-0085419_40	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0085419_40	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0085419_40	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0085419_41	PHROG	phrog_390	Arc-like repressor	transcription regulation
UHGV-0085419_41	UniRef90	UniRef90_UPI00189C3058	Rho termination protein	NA
UHGV-0085419_41	eggNOG-mapper	279808.SH2353	Rho termination factor, N-terminal domain	NA
UHGV-0085419_42	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0085419_42	UniRef90	UniRef90_A0A173ZES1	Phage gp6-like head-tail connector protein	NA
UHGV-0085419_42	eggNOG-mapper	476272.RUMHYD_02856	Phage gp6-like head-tail connector protein	NA
UHGV-0085419_42	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0085419_42	Structural annotation	PF05135	NA	NA
UHGV-0085419_43	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0085419_43	eggNOG-mapper	476272.RUMHYD_02857	NA	NA
UHGV-0085419_43	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0085419_44	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0085419_44	UniRef90	UniRef90_UPI00156D85AA	HK97 gp10 family phage protein	NA
UHGV-0085419_44	eggNOG-mapper	476272.RUMHYD_02858	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0085419_44	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0085419_44	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0085419_44	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0085419_45	PHROG	phrog_176	tail terminator	connector
UHGV-0085419_45	UniRef90	UniRef90_UPI001D04E689	NA	NA
UHGV-0085419_45	eggNOG-mapper	476272.RUMHYD_02859	NA	NA
UHGV-0085419_45	Structural annotation	PF11367	NA	NA
UHGV-0085419_46	PHROG	phrog_238	major tail protein	tail
UHGV-0085419_46	UniRef90	UniRef90_A0A173YN47	Phage major tail protein, TP901-1 family	NA
UHGV-0085419_46	eggNOG-mapper	1235798.C817_03471	Phage tail tube protein	NA
UHGV-0085419_46	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0085419_46	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0085419_46	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0085419_47	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0085419_47	UniRef90	UniRef90_UPI001D067B55	tail assembly chaperone	NA
UHGV-0085419_47	eggNOG-mapper	476272.RUMHYD_02861	Phage tail assembly chaperone protein, TAC	NA
UHGV-0085419_47	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0085419_47	Structural annotation	PF12363	NA	NA
UHGV-0085419_48	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0085419_48	UniRef90	UniRef90_F0YWR6	NA	NA
UHGV-0085419_48	eggNOG-mapper	476272.RUMHYD_02862	NA	NA
UHGV-0085419_49	PHROG	phrog_1204	tail protein	tail
UHGV-0085419_49	UniRef90	UniRef90_UPI001896B0C6	tape measure protein	NA
UHGV-0085419_49	eggNOG-mapper	1232453.BAIF02000011_gene3367	phage tail tape measure protein	NA
UHGV-0085419_49	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0085419_49	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0085419_49	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0085419_49	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0085419_50	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0085419_50	UniRef90	UniRef90_UPI001D093A04	phage tail family protein	NA
UHGV-0085419_50	eggNOG-mapper	1235796.C815_00909	Phage tail protein	NA
UHGV-0085419_50	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0085419_50	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0085419_50	COG	COG4722	Phage-related protein YomH	NA
UHGV-0085419_50	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0085419_51	KOfam	K19719	COL2A; collagen type II alpha	NA
UHGV-0085419_51	PHROG	phrog_9478	minor tail protein	tail
UHGV-0085419_51	UniRef90	UniRef90_UPI0018A94FF7	phage tail protein	NA
UHGV-0085419_51	eggNOG-mapper	543734.LCABL_13420	cellulase activity	NA
UHGV-0085419_51	Pfam	PF21470	Minor structural protein 5-like, C-terminal domain	BppU-like_C
UHGV-0085419_51	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0085419_51	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0085419_51	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0085419_51	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0085419_52	KOfam	K00689	E2.4.1.5; dextransucrase [EC:2.4.1.5]	NA
UHGV-0085419_52	PHROG	phrog_7854	endolysin	lysis
UHGV-0085419_52	UniRef90	UniRef90_A6BEP4	Putative N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0085419_52	eggNOG-mapper	411462.DORLON_00764	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0085419_52	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0085419_52	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0085419_52	Pfam	PF19085	Choline-binding repeat	Choline_bind_2
UHGV-0085419_52	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0085419_52	Structural annotation	PF01520, TIGR02883, COG0860, COG5263	NA	NA
UHGV-0085419_55	PHROG	phrog_1009	NA	unknown function
UHGV-0085419_55	UniRef90	UniRef90_A0A173RD60	Branched-chain amino acid ABC transporter permease	NA
UHGV-0085419_55	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-0085419_56	PHROG	phrog_1129	holin	lysis
UHGV-0085419_56	UniRef90	UniRef90_UPI001F15FE24	phage holin family protein	NA
UHGV-0085419_56	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0085419_56	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0085419_56	Structural annotation	PF06946	NA	NA
UHGV-0085419_58	eggNOG-mapper	411461.DORFOR_01187	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0085419_58	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA