UHGV-0085608

Genome information

Genome length 24,385 bps

CDS count 31

Completeness 54.44% (medium-quality)

geNomad score 0.9761

Prediction confidence Confident

Genome information
Genome ID	UHGV-0085608
vOTU ID	vOTU-029794
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_138441
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.44% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9761
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.72
Jumbo phage	No

Genome content
Genome length	24,385 bps
GC content	47.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	91.72%
Average CDS length	724.36 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0085608_1	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0085608_1	PHROG	phrog_435	endolysin	lysis
UHGV-0085608_1	UniRef90	UniRef90_A0A848EUC5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0085608_1	eggNOG-mapper	864563.HMPREF9166_0105	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0085608_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0085608_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0085608_2	eggNOG-mapper	568816.Acin_1951	NA	NA
UHGV-0085608_3	PHROG	phrog_4105	NA	unknown function
UHGV-0085608_3	eggNOG-mapper	97139.C824_05951	NA	NA
UHGV-0085608_4	PHROG	phrog_32639	NA	unknown function
UHGV-0085608_5	KOfam	K14059	int; integrase	NA
UHGV-0085608_5	PHROG	phrog_1	integrase	integration and excision
UHGV-0085608_5	UniRef90	UniRef90_A0A2S0M4J5	Site-specific integrase	NA
UHGV-0085608_5	eggNOG-mapper	1273103.NM10_01678	Phage integrase family	NA
UHGV-0085608_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0085608_5	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0085608_5	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0085608_7	eggNOG-mapper	1273103.NM10_08099	NA	NA
UHGV-0085608_8	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0085608_8	UniRef90	UniRef90_UPI0018C6F949	phage tail protein	NA
UHGV-0085608_8	eggNOG-mapper	546273.VEIDISOL_00731	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0085608_8	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0085608_9	PHROG	phrog_521	tail protein	tail
UHGV-0085608_9	UniRef90	UniRef90_UPI000F8F5AA4	NA	NA
UHGV-0085608_9	eggNOG-mapper	546273.VEIDISOL_00730	NA	NA
UHGV-0085608_9	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0085608_9	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0085608_9	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0085608_10	PHROG	phrog_6	baseplate protein	tail
UHGV-0085608_10	UniRef90	UniRef90_A0A2A2ILD2	Baseplate_J domain-containing protein	NA
UHGV-0085608_10	eggNOG-mapper	1111454.HMPREF1250_0160	Baseplate J-like protein	NA
UHGV-0085608_10	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0085608_10	COG	COG3299	NA	NA
UHGV-0085608_10	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0085608_11	PHROG	phrog_120	baseplate protein	tail
UHGV-0085608_11	UniRef90	UniRef90_UPI000F8DC559	NA	NA
UHGV-0085608_11	eggNOG-mapper	1111454.HMPREF1250_0161	NA	NA
UHGV-0085608_11	Pfam	PF10934	NA	DUF2634
UHGV-0085608_11	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0085608_11	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0085608_12	PHROG	phrog_579	NA	unknown function
UHGV-0085608_12	UniRef90	UniRef90_UPI0019614343	NA	NA
UHGV-0085608_12	eggNOG-mapper	546273.VEIDISOL_00727	NA	NA
UHGV-0085608_12	Pfam	PF10844	NA	DUF2577
UHGV-0085608_12	Structural annotation	PF10844	NA	NA
UHGV-0085608_13	PHROG	phrog_400	tail protein	tail
UHGV-0085608_13	UniRef90	UniRef90_U7UPQ1	Phage_lysozyme2 domain-containing protein	NA
UHGV-0085608_13	eggNOG-mapper	1111454.HMPREF1250_0162	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0085608_13	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0085608_13	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0085608_13	Structural annotation	PF14594, PF18013, NF033848, COG4379	NA	NA
UHGV-0085608_14	PHROG	phrog_380	endolysin	lysis
UHGV-0085608_14	UniRef90	UniRef90_A0A496P7P0	Peptidoglycan-binding protein	NA
UHGV-0085608_14	eggNOG-mapper	1111454.HMPREF1250_0163	PFAM LysM domain	NA
UHGV-0085608_14	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0085608_14	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-0085608_15	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0085608_15	UniRef90	UniRef90_U7UPA0	Tape measure domain protein	NA
UHGV-0085608_15	eggNOG-mapper	1111454.HMPREF1250_0164	tape measure	NA
UHGV-0085608_15	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0085608_16	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0085608_16	UniRef90	UniRef90_UPI0015F3E6D8	phage portal protein	NA
UHGV-0085608_16	eggNOG-mapper	1123511.KB905868_gene173	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0085608_16	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0085608_16	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0085608_17	PHROG	phrog_365	tail protein	tail
UHGV-0085608_17	UniRef90	UniRef90_A0A1G5VIX0	Phage tail tube protein	NA
UHGV-0085608_17	eggNOG-mapper	1123511.KB905868_gene174	Phage tail tube protein	NA
UHGV-0085608_17	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0085608_17	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0085608_18	PHROG	phrog_279	tail sheath	tail
UHGV-0085608_18	UniRef90	UniRef90_A0A1M4V5N0	Phage tail sheath protein	NA
UHGV-0085608_18	eggNOG-mapper	1123511.KB905868_gene175	Phage tail sheath C-terminal domain	NA
UHGV-0085608_18	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0085608_18	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0085608_18	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0085608_18	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0085608_19	PHROG	phrog_966	NA	unknown function
UHGV-0085608_19	eggNOG-mapper	1321779.HMPREF1984_01300	NA	NA
UHGV-0085608_20	PHROG	phrog_525	NA	unknown function
UHGV-0085608_20	eggNOG-mapper	1123511.KB905868_gene177	NA	NA
UHGV-0085608_20	Pfam	PF20765	NA	DUF6838
UHGV-0085608_20	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0085608_21	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0085608_21	UniRef90	UniRef90_UPI0015F4E1CA	HK97 gp10 family phage protein	NA
UHGV-0085608_21	eggNOG-mapper	1123511.KB905868_gene178	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0085608_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0085608_21	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0085608_22	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0085608_22	UniRef90	UniRef90_A0A3P6KBQ7	NA	NA
UHGV-0085608_22	eggNOG-mapper	1123511.KB905868_gene179	NA	NA
UHGV-0085608_22	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0085608_23	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0085608_23	UniRef90	UniRef90_UPI00056D9D64	phage head-tail connector protein	NA
UHGV-0085608_23	eggNOG-mapper	1123511.KB905868_gene180	NA	NA
UHGV-0085608_23	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0085608_23	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0085608_24	PHROG	phrog_29	major head protein	head and packaging
UHGV-0085608_24	UniRef90	UniRef90_UPI001D6AA5E6	major capsid protein	NA
UHGV-0085608_24	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0085608_24	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0085608_24	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0085608_25	PHROG	phrog_909	major head protein	head and packaging
UHGV-0085608_25	UniRef90	UniRef90_A0A0A8JLJ9	NA	NA
UHGV-0085608_25	eggNOG-mapper	60520.HR47_13470	NA	NA
UHGV-0085608_25	Structural annotation	PF02924	NA	NA
UHGV-0085608_26	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0085608_26	UniRef90	UniRef90_UPI001AEAD020	phage scaffolding protein	NA
UHGV-0085608_26	eggNOG-mapper	1408823.AXUS01000024_gene2715	Phage minor structural protein GP20	NA
UHGV-0085608_26	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0085608_26	Structural annotation	PF06810	NA	NA
UHGV-0085608_28	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0085608_28	UniRef90	UniRef90_UPI0002D1CE40	minor capsid protein	NA
UHGV-0085608_28	eggNOG-mapper	1123511.KB905868_gene185	Phage Mu protein F like protein	NA
UHGV-0085608_28	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0085608_28	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0085608_28	COG	COG2369	NA	NA
UHGV-0085608_28	Structural annotation	PF04233, PF04002, TIGR01641, COG2369	NA	NA
UHGV-0085608_29	PHROG	phrog_64	portal protein	head and packaging
UHGV-0085608_29	UniRef90	UniRef90_H1CAJ0	SPP1 family phage portal protein	NA
UHGV-0085608_29	eggNOG-mapper	1203606.HMPREF1526_00321	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0085608_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0085608_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0085608_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0085608_30	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0085608_30	UniRef90	UniRef90_A0A1M6P1A0	Phage terminase, large subunit, PBSX family	NA
UHGV-0085608_30	eggNOG-mapper	1273103.NM10_01089	Phage terminase, large subunit	NA
UHGV-0085608_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0085608_30	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0085608_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0085608_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0085608_30	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0085608_31	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0085608_31	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0085608_31	UniRef90	UniRef90_S7HTI6	Phage terminase small subunit	NA
UHGV-0085608_31	eggNOG-mapper	1273103.NM10_01094	terminase, small subunit	NA
UHGV-0085608_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0085608_31	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0085608_31	Structural annotation	PF03592, COG3728	NA	NA