UHGV-0085702

Genome information

Genome length 37,555 bps

CDS count 53

Completeness 96.07% (high-quality)

geNomad score 0.9534

Prediction confidence Confident

Genome information
Genome ID	UHGV-0085702
vOTU ID	vOTU-079130
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_158037
BioSample	NA
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.07% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9534
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.61
Jumbo phage	No

Genome content
Genome length	37,555 bps
GC content	34.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	87.72%
Average CDS length	625.59 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0085702_1	PHROG	phrog_1066	NA	unknown function
UHGV-0085702_1	UniRef90	UniRef90_A0A844JSL5	Zinc-binding protein	NA
UHGV-0085702_1	eggNOG-mapper	457396.CSBG_01045	NA	NA
UHGV-0085702_1	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0085702_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0085702_2	UniRef90	UniRef90_A0A844JPW5	Terminase large subunit	NA
UHGV-0085702_2	eggNOG-mapper	457396.CSBG_01046	Terminase	NA
UHGV-0085702_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0085702_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0085702_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0085702_2	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0085702_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0085702_3	UniRef90	UniRef90_A0A844JPJ4	Phage portal protein	NA
UHGV-0085702_3	eggNOG-mapper	1211817.CCAT010000007_gene1039	Portal protein	NA
UHGV-0085702_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0085702_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0085702_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0085702_4	KOfam	K06904	NA	NA
UHGV-0085702_4	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0085702_4	UniRef90	UniRef90_A0A844JPI9	HK97 family phage prohead protease	NA
UHGV-0085702_4	eggNOG-mapper	1123288.SOV_2c03620	Caudovirus prohead serine protease	NA
UHGV-0085702_4	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0085702_4	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0085702_4	COG	COG3740	Phage head maturation protease	NA
UHGV-0085702_4	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0085702_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0085702_5	UniRef90	UniRef90_A0A844JQI8	Phage major capsid protein	NA
UHGV-0085702_5	eggNOG-mapper	457396.CSBG_01049	Phage major capsid protein, HK97 family	NA
UHGV-0085702_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0085702_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0085702_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0085702_5	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0085702_6	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0085702_6	UniRef90	UniRef90_UPI0005DAB1A7	head-tail connector protein	NA
UHGV-0085702_6	eggNOG-mapper	1391647.AVSV01000039_gene1101	Phage gp6-like head-tail connector protein	NA
UHGV-0085702_6	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0085702_6	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0085702_6	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0085702_7	PHROG	phrog_25	head closure Hc1	connector
UHGV-0085702_7	UniRef90	UniRef90_A0A844JR27	Phage head closure protein	NA
UHGV-0085702_7	eggNOG-mapper	1292035.H476_3504	Phage head-tail joining protein	NA
UHGV-0085702_7	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0085702_7	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0085702_7	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0085702_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0085702_8	UniRef90	UniRef90_A0A0A7RUF1	Head-tail adaptor protein	NA
UHGV-0085702_8	eggNOG-mapper	536232.CLM_2051	NA	NA
UHGV-0085702_8	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0085702_9	PHROG	phrog_78	tail terminator	connector
UHGV-0085702_9	UniRef90	UniRef90_UPI000BE2C5F3	prohead protease	NA
UHGV-0085702_9	eggNOG-mapper	1408422.JHYF01000021_gene975	NA	NA
UHGV-0085702_9	Structural annotation	PF05657	NA	NA
UHGV-0085702_10	PHROG	phrog_88	major tail protein	tail
UHGV-0085702_10	UniRef90	UniRef90_UPI001EEACF29	phage tail protein	NA
UHGV-0085702_10	eggNOG-mapper	1391647.AVSV01000039_gene1105	domain, Protein	NA
UHGV-0085702_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0085702_10	COG	COG5492	NA	NA
UHGV-0085702_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0085702_13	KOfam	K03529	smc; chromosome segregation protein	NA
UHGV-0085702_13	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0085702_13	UniRef90	UniRef90_A0A844JPI8	Phage tail tape measure protein	NA
UHGV-0085702_13	eggNOG-mapper	190478.Q8SBP1_9CAUD	peptidoglycan catabolic process	NA
UHGV-0085702_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0085702_13	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0085702_13	Structural annotation	PF10145, PF16789, TIGR01760, TIGR02473, COG5280	NA	NA
UHGV-0085702_14	UniRef90	UniRef90_A0A0E1KYU8	Phage tail family protein	NA
UHGV-0085702_14	eggNOG-mapper	536233.CLO_1578	NA	NA
UHGV-0085702_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0085702_14	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0085702_15	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0085702_15	UniRef90	UniRef90_UPI0006C3E53B	phage tail protein	NA
UHGV-0085702_15	eggNOG-mapper	702450.CUW_0547	NA	NA
UHGV-0085702_15	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0085702_15	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0085702_15	COG	COG4926	Phage-related protein	NA
UHGV-0085702_16	PHROG	phrog_21231	virion structural protein	head and packaging
UHGV-0085702_16	UniRef90	UniRef90_A0A844JPA6	NA	NA
UHGV-0085702_16	eggNOG-mapper	1499683.CCFF01000005_gene81	NA	NA
UHGV-0085702_16	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0085702_16	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0085702_16	Structural annotation	PF10651, PF16255, COG3470	NA	NA
UHGV-0085702_17	eggNOG-mapper	1280689.AUJC01000007_gene3301	NA	NA
UHGV-0085702_18	PHROG	phrog_1129	holin	lysis
UHGV-0085702_18	UniRef90	UniRef90_A0A6A8SI90	Holin	NA
UHGV-0085702_18	eggNOG-mapper	702450.CUW_0551	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0085702_18	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0085702_18	Structural annotation	PF06946	NA	NA
UHGV-0085702_19	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0085702_19	PHROG	phrog_435	endolysin	lysis
UHGV-0085702_19	UniRef90	UniRef90_A0A6A8SKD1	SPOR domain-containing protein	NA
UHGV-0085702_19	eggNOG-mapper	1382305.AZUC01000009_gene1779	Ami_3	NA
UHGV-0085702_19	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0085702_19	Pfam	PF05036	SPOR domain	SPOR
UHGV-0085702_19	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0085702_19	Structural annotation	PF01520, PF05036, MF_02022, MF_00562, TIGR02883, COG0860, COG3147	NA	NA
UHGV-0085702_20	UniRef90	UniRef90_A0A6G2CFW3	NA	NA
UHGV-0085702_20	Pfam	PF17295	NA	DUF5348
UHGV-0085702_22	KOfam	K18640	parM, stbA; plasmid segregation protein ParM	NA
UHGV-0085702_22	PHROG	phrog_691	partition protein	DNA, RNA and nucleotide metabolism
UHGV-0085702_22	UniRef90	UniRef90_A0A336QQZ8	StbA family protein	NA
UHGV-0085702_22	eggNOG-mapper	573061.Clocel_3521	StbA protein	NA
UHGV-0085702_22	Pfam	PF17989	Actin like proteins N terminal domain	ALP_N
UHGV-0085702_22	Pfam	PF21522	Archaeal actin homologue MreB-like, C-terminal	MreB-like_C
UHGV-0085702_22	COG	COG0849	Cell division ATPase FtsA	NA
UHGV-0085702_22	Structural annotation	PF06723, MF_02207, NF010498, COG1077	NA	NA
UHGV-0085702_23	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0085702_23	PHROG	phrog_17577	restriction endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0085702_23	UniRef90	UniRef90_UPI0018989109	restriction endonuclease	NA
UHGV-0085702_23	eggNOG-mapper	574375.BAGA_08480	restriction endonuclease	NA
UHGV-0085702_23	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0085702_23	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0085702_23	COG	COG1715	Restriction endonuclease Mrr	NA
UHGV-0085702_24	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0085702_24	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0085702_24	UniRef90	UniRef90_A0A845QUN7	DNA translocase FtsK	NA
UHGV-0085702_24	eggNOG-mapper	744985.HIMB59_00003590	DNA segregation ATPase FtsK SpoIIIE	NA
UHGV-0085702_24	PADLOC	SspH_00004	SspH	SSP
UHGV-0085702_24	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-0085702_24	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0085702_24	Structural annotation	PF01580, PF17854, MF_00348, NF041214, COG0433	NA	NA
UHGV-0085702_25	PHROG	phrog_9996	NA	unknown function
UHGV-0085702_26	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0085702_26	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0085702_27	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0085702_27	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0085702_27	UniRef90	UniRef90_A0A1I7H419	Site-specific DNA recombinase	NA
UHGV-0085702_27	eggNOG-mapper	1294142.CINTURNW_1680	Resolvase, N terminal domain	NA
UHGV-0085702_27	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0085702_27	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0085702_27	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0085702_28	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0085702_28	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0085702_28	UniRef90	UniRef90_UPI0009F8C143	helix-turn-helix domain-containing protein	NA
UHGV-0085702_28	eggNOG-mapper	1410668.JNKC01000008_gene2712	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0085702_28	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0085702_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0085702_28	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0085702_30	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0085702_30	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0085702_30	UniRef90	UniRef90_A0A6M1WI03	Helix-turn-helix transcriptional regulator	NA
UHGV-0085702_30	eggNOG-mapper	755731.Clo1100_1415	DNA-binding helix-turn-helix protein	NA
UHGV-0085702_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0085702_30	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0085702_30	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0085702_34	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0085702_34	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0085702_34	eggNOG-mapper	1321814.HMPREF9089_00921	NA	NA
UHGV-0085702_34	Structural annotation	PF21578	NA	NA
UHGV-0085702_36	PHROG	phrog_398	NA	unknown function
UHGV-0085702_36	UniRef90	UniRef90_UPI0006C0DACF	putative HNHc nuclease	NA
UHGV-0085702_36	eggNOG-mapper	1234679.BN424_2645	Putative HNHc nuclease	NA
UHGV-0085702_36	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0085702_37	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0085702_37	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0085702_37	UniRef90	UniRef90_A0A6I1BC99	Single-stranded DNA-binding protein	NA
UHGV-0085702_37	eggNOG-mapper	702450.CUW_0167	Single-stranded DNA-binding protein	NA
UHGV-0085702_37	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0085702_37	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0085702_37	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0085702_37	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0085702_37	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0085702_39	COG	COG3081	dsDNA-binding nucleoid-associated protein YejK/NdpA	NA
UHGV-0085702_44	UniRef90	UniRef90_A0A6I3NF12	Helix-turn-helix domain-containing protein	NA
UHGV-0085702_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0085702_45	PHROG	phrog_23822	NA	unknown function
UHGV-0085702_49	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0085702_49	UniRef90	UniRef90_A0A844JSD9	MazG domain-containing protein	NA
UHGV-0085702_49	eggNOG-mapper	428125.CLOLEP_01814	COG NOG14118 non supervised orthologous group	NA
UHGV-0085702_49	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0085702_50	Structural annotation	PF06530, MF_00245, NF008895, COG1595	NA	NA
UHGV-0085702_51	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0085702_51	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0085702_51	UniRef90	UniRef90_UPI0011A4B4B0	site-specific DNA-methyltransferase	NA
UHGV-0085702_51	eggNOG-mapper	574376.BAMA_16525	DNA methylase	NA
UHGV-0085702_51	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0085702_51	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0085702_51	COG	COG0863	DNA modification methylase	NA
UHGV-0085702_51	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0085702_52	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0085702_52	UniRef90	UniRef90_A0A844JNS5	Transposase	NA
UHGV-0085702_52	eggNOG-mapper	500633.CLOHIR_01443	HNH endonuclease	NA
UHGV-0085702_52	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0085702_52	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0085702_52	Structural annotation	PF07141	NA	NA
UHGV-0085702_53	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0085702_53	UniRef90	UniRef90_A0A844JQT7	HNH endonuclease	NA
UHGV-0085702_53	eggNOG-mapper	1211817.CCAT010000007_gene1042	HNH endonuclease	NA
UHGV-0085702_53	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0085702_53	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0085702_53	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA