UHGV-0085777

Genome information

Genome length 16,965 bps

CDS count 23

Completeness 85.91% (medium-quality)

geNomad score 0.9705

Prediction confidence Confident

Genome information
Genome ID	UHGV-0085777
vOTU ID	vOTU-012609
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_147005
BioSample	SAMEA2737703
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.91% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9705
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.48
Jumbo phage	No

Genome content
Genome length	16,965 bps
GC content	54.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	23
CDS density	91.98%
Average CDS length	681.26 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0085777_2	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0085777_2	PHROG	phrog_14030	NA	unknown function
UHGV-0085777_2	UniRef90	UniRef90_A0A6N3GLP8	Phage_lysozyme2 domain-containing protein	NA
UHGV-0085777_2	eggNOG-mapper	411469.EUBHAL_00974	CHAP domain	NA
UHGV-0085777_2	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0085777_2	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0085777_2	Structural annotation	PF05382, PF21683, NF033742, COG0791	NA	NA
UHGV-0085777_3	PHROG	phrog_2150	terminase	head and packaging
UHGV-0085777_3	UniRef90	UniRef90_A0A355RJE0	DNA encapsidation protein	NA
UHGV-0085777_3	eggNOG-mapper	10753.B7SSN7_BPNF	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0085777_3	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0085777_3	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0085777_4	KOfam	K07273	acm; lysozyme	NA
UHGV-0085777_4	PHROG	phrog_291	endolysin	lysis
UHGV-0085777_4	UniRef90	UniRef90_J9FII9	Glycoside hydrolase, family 25 (Fragment)	NA
UHGV-0085777_4	eggNOG-mapper	1437608.BBIA_0613	Glycosyl hydrolases family 25	NA
UHGV-0085777_4	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0085777_4	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0085777_4	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0085777_6	Structural annotation	PF08931	NA	NA
UHGV-0085777_7	KOfam	K07273	acm; lysozyme	NA
UHGV-0085777_7	PHROG	phrog_291	endolysin	lysis
UHGV-0085777_7	UniRef90	UniRef90_UPI0007E2D29D	N,O-diacetylmuramidase-like	NA
UHGV-0085777_7	eggNOG-mapper	1123263.AUKY01000015_gene1625	lyzozyme M1	NA
UHGV-0085777_7	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0085777_7	COG	COG1388	LysM repeat	NA
UHGV-0085777_8	eggNOG-mapper	3880.AES85432	Polygalacturonase QRT3	NA
UHGV-0085777_8	Pfam	PF12218	N terminal extension of bacteriophage endosialidase	End_N_terminal
UHGV-0085777_11	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0085777_11	UniRef90	UniRef90_A6XAD8	Lower collar	NA
UHGV-0085777_11	eggNOG-mapper	338473.A6XAD8_9CAUD	NA	NA
UHGV-0085777_12	PHROG	phrog_2038	upper collar connector	connector
UHGV-0085777_12	UniRef90	UniRef90_A0A7S5V0G4	Upper collar connector protein	NA
UHGV-0085777_12	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-0085777_12	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0085777_12	Structural annotation	PF05352, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0085777_13	PHROG	phrog_2248	tail protein	tail
UHGV-0085777_13	UniRef90	UniRef90_A0A2V2GER8	Caud_tail_N domain-containing protein	NA
UHGV-0085777_13	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0085777_13	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0085777_13	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0085777_13	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0085777_14	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0085777_14	UniRef90	UniRef90_J9H241	Major head protein	NA
UHGV-0085777_14	eggNOG-mapper	12345.CAPSD_BPGA1	T=13 icosahedral viral capsid	NA
UHGV-0085777_14	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0085777_16	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0085777_16	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0085777_16	UniRef90	UniRef90_A0A2V2GAI8	DNA polymerase	NA
UHGV-0085777_16	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0085777_16	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0085777_16	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0085777_17	Structural annotation	PF05435	NA	NA
UHGV-0085777_18	PHROG	phrog_10365	late transcriptional activator	transcription regulation
UHGV-0085777_18	Pfam	PF05464	Phi-29-like late genes activator (early protein GP4)	Phi-29_GP4
UHGV-0085777_18	Structural annotation	PF05464	NA	NA
UHGV-0085777_20	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0085777_20	UniRef90	UniRef90_J9GJ47	SsDNA binding protein (Fragment)	NA
UHGV-0085777_20	eggNOG-mapper	307240.Q5ILD0_9VIRU	Pfam:Phi29_Phage_SSB	NA
UHGV-0085777_20	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0085777_20	Structural annotation	PF17427	NA	NA
UHGV-0085777_21	Structural annotation	PF17548	NA	NA