UHGV-0085879

Genome information

Genome length 33,497 bps

CDS count 64

Completeness 93.24% (high-quality)

geNomad score 0.9534

Prediction confidence Confident

Genome information
Genome ID	UHGV-0085879
vOTU ID	vOTU-009138
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_140779
BioSample	SAMEA2737756
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.24% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9534
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.28
Jumbo phage	No

Genome content
Genome length	33,497 bps
GC content	34.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	93.23%
Average CDS length	492.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0085879_2	eggNOG-mapper	349123.Lreu23DRAFT_4261	domain, Protein	NA
UHGV-0085879_2	COG	COG2849	Antitoxin component YwqK of the YwqJK toxin-antitoxin module	NA
UHGV-0085879_3	UniRef90	UniRef90_UPI00067F15F5	helix-turn-helix domain-containing protein	NA
UHGV-0085879_3	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-0085879_6	KOfam	K14059	int; integrase	NA
UHGV-0085879_6	PHROG	phrog_1	integrase	integration and excision
UHGV-0085879_6	UniRef90	UniRef90_UPI000E4D01BB	site-specific integrase	NA
UHGV-0085879_6	eggNOG-mapper	1232446.BAIE02000002_gene793	Phage integrase family	NA
UHGV-0085879_6	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0085879_6	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0085879_6	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4974	NA	NA
UHGV-0085879_9	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0085879_9	PHROG	phrog_3088	amidase	lysis
UHGV-0085879_9	UniRef90	UniRef90_A0A3E3AF17	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0085879_9	eggNOG-mapper	1232446.BAIE02000094_gene1162	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0085879_9	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0085879_9	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0085879_9	Structural annotation	PF01510, PF18342, MF_04111, NF008758, NF040670, COG5632	NA	NA
UHGV-0085879_10	PHROG	phrog_4105	NA	unknown function
UHGV-0085879_10	eggNOG-mapper	1121105.ATXL01000027_gene760	NA	NA
UHGV-0085879_11	PHROG	phrog_1129	holin	lysis
UHGV-0085879_11	UniRef90	UniRef90_A0A0J8Z1S7	Holin protein	NA
UHGV-0085879_11	eggNOG-mapper	1123075.AUDP01000020_gene1532	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0085879_11	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0085879_11	Structural annotation	PF06946	NA	NA
UHGV-0085879_12	eggNOG-mapper	1232446.BAIE02000002_gene805	Integrase	NA
UHGV-0085879_12	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0085879_16	Structural annotation	PF07703, TIGR02657, COG2372	NA	NA
UHGV-0085879_17	PHROG	phrog_32322	NA	unknown function
UHGV-0085879_17	UniRef90	UniRef90_A0A7U9CLF4	Ig-like_bact domain-containing protein	NA
UHGV-0085879_17	eggNOG-mapper	1232446.BAIE02000002_gene840	NA	NA
UHGV-0085879_17	Pfam	PF13754	NA	Big_3_4
UHGV-0085879_17	Structural annotation	PF13754	NA	NA
UHGV-0085879_18	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0085879_18	PHROG	phrog_11157	NA	unknown function
UHGV-0085879_18	UniRef90	UniRef90_A0A1Y4N8R1	Big_13 domain-containing protein	NA
UHGV-0085879_18	eggNOG-mapper	1232446.BAIE02000002_gene839	NA	NA
UHGV-0085879_18	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0085879_18	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0085879_18	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0085879_18	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0085879_19	eggNOG-mapper	999413.HMPREF1094_01998	NA	NA
UHGV-0085879_20	PHROG	phrog_13289	tail protein	tail
UHGV-0085879_20	UniRef90	UniRef90_A0A3E3AEF9	Peptidase S74 domain-containing protein	NA
UHGV-0085879_20	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-0085879_20	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0085879_20	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0085879_20	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0085879_20	COG	COG4926	Phage-related protein	NA
UHGV-0085879_20	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0085879_21	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0085879_21	UniRef90	UniRef90_A0A3E3AF06	Phage tail protein	NA
UHGV-0085879_21	eggNOG-mapper	1232446.BAIE02000002_gene835	phage tail	NA
UHGV-0085879_21	COG	COG4722	Phage-related protein YomH	NA
UHGV-0085879_21	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0085879_22	PHROG	phrog_23464	NA	unknown function
UHGV-0085879_22	eggNOG-mapper	1232446.BAIE02000002_gene834	tape measure	NA
UHGV-0085879_22	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0085879_22	Structural annotation	PF20155	NA	NA
UHGV-0085879_24	eggNOG-mapper	1235798.C817_04591	NA	NA
UHGV-0085879_25	PHROG	phrog_88	major tail protein	tail
UHGV-0085879_25	UniRef90	UniRef90_A0A3E3ACS6	Phage tail protein	NA
UHGV-0085879_25	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0085879_25	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0085879_26	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-0085879_26	eggNOG-mapper	1232446.BAIE02000002_gene830	NA	NA
UHGV-0085879_26	Structural annotation	TIGR01725	NA	NA
UHGV-0085879_27	PHROG	phrog_78	tail terminator	connector
UHGV-0085879_27	eggNOG-mapper	1232446.BAIE02000002_gene829	NA	NA
UHGV-0085879_27	Structural annotation	PF05657	NA	NA
UHGV-0085879_28	PHROG	phrog_19734	NA	unknown function
UHGV-0085879_28	UniRef90	UniRef90_A0A3E3ACV2	Head-tail adaptor protein	NA
UHGV-0085879_28	eggNOG-mapper	1232446.BAIE02000002_gene828	NA	NA
UHGV-0085879_28	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0085879_29	PHROG	phrog_2550	NA	unknown function
UHGV-0085879_29	UniRef90	UniRef90_R5V091	Phage related protein	NA
UHGV-0085879_29	eggNOG-mapper	1232446.BAIE02000002_gene827	NA	NA
UHGV-0085879_29	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0085879_30	PHROG	phrog_10	major head protein	head and packaging
UHGV-0085879_30	UniRef90	UniRef90_A0A3E3ACQ3	Phage major capsid protein	NA
UHGV-0085879_30	eggNOG-mapper	1232446.BAIE02000002_gene826	phage major capsid protein, HK97 family	NA
UHGV-0085879_30	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0085879_30	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0085879_30	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0085879_30	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0085879_31	KOfam	K06904	NA	NA
UHGV-0085879_31	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0085879_31	UniRef90	UniRef90_A0A3E3AEE5	HK97 family phage prohead protease	NA
UHGV-0085879_31	eggNOG-mapper	1232446.BAIE02000002_gene825	Phage prohead protease, HK97 family	NA
UHGV-0085879_31	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0085879_31	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0085879_31	COG	COG3740	Phage head maturation protease	NA
UHGV-0085879_31	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0085879_32	PHROG	phrog_12	portal protein	head and packaging
UHGV-0085879_32	UniRef90	UniRef90_A0A3E3AEZ3	Phage portal protein	NA
UHGV-0085879_32	eggNOG-mapper	1232446.BAIE02000002_gene824	Phage portal protein, HK97 family	NA
UHGV-0085879_32	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0085879_32	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0085879_32	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0085879_32	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0085879_33	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0085879_33	UniRef90	UniRef90_A0A3E3ADF9	Terminase large subunit	NA
UHGV-0085879_33	eggNOG-mapper	1232446.BAIE02000002_gene823	Phage Terminase	NA
UHGV-0085879_33	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0085879_33	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0085879_33	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0085879_33	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0085879_34	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0085879_34	UniRef90	UniRef90_A0A3E3ADK1	Terminase	NA
UHGV-0085879_34	eggNOG-mapper	1232446.BAIE02000002_gene822	Phage terminase, small subunit	NA
UHGV-0085879_34	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0085879_34	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0085879_36	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0085879_36	UniRef90	UniRef90_A0A3E3ADS4	HNH endonuclease	NA
UHGV-0085879_36	eggNOG-mapper	1232446.BAIE02000002_gene820	HNH nucleases	NA
UHGV-0085879_36	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0085879_37	Structural annotation	PF04545, PF01920, TIGR01636	NA	NA
UHGV-0085879_40	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0085879_40	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0085879_40	UniRef90	UniRef90_G9R103	SF4 helicase domain-containing protein	NA
UHGV-0085879_40	eggNOG-mapper	1232446.BAIE02000002_gene817	Participates in initiation and elongation during chromosome replication	NA
UHGV-0085879_40	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0085879_40	COG	COG0305	Replicative DNA helicase	NA
UHGV-0085879_40	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0085879_41	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0085879_41	UniRef90	UniRef90_UPI000497F8A6	helix-turn-helix domain-containing protein	NA
UHGV-0085879_41	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0085879_41	Structural annotation	PF01978, MF_01909, TIGR04176, COG3355	NA	NA
UHGV-0085879_42	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0085879_42	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0085879_42	eggNOG-mapper	1232446.BAIE02000002_gene815	NA	NA
UHGV-0085879_42	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0085879_43	UniRef90	UniRef90_G9R100	GIY-YIG domain-containing protein	NA
UHGV-0085879_43	eggNOG-mapper	1078085.HMPREF1210_01161	GIY-YIG catalytic domain	NA
UHGV-0085879_43	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0085879_43	Structural annotation	PF19835, TIGR01453	NA	NA
UHGV-0085879_45	UniRef90	UniRef90_A0A7U9CJ41	Phosphagen kinase N-terminal domain-containing protein	NA
UHGV-0085879_47	eggNOG-mapper	1232446.BAIE02000002_gene811	NA	NA
UHGV-0085879_50	PHROG	phrog_7711	NA	unknown function
UHGV-0085879_50	UniRef90	UniRef90_UPI001C38CAD2	Lar family restriction alleviation protein	NA
UHGV-0085879_50	eggNOG-mapper	268407.PWYN_15580	NA	NA
UHGV-0085879_52	eggNOG-mapper	1123263.AUKY01000072_gene2097	NA	NA
UHGV-0085879_53	eggNOG-mapper	1232446.BAIE02000011_gene1618	NA	NA
UHGV-0085879_55	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0085879_55	PHROG	phrog_216	integrase	integration and excision
UHGV-0085879_55	UniRef90	UniRef90_A0A7U9CL76	Tyr recombinase domain-containing protein	NA
UHGV-0085879_55	eggNOG-mapper	1232446.BAIE02000002_gene805	Integrase	NA
UHGV-0085879_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0085879_55	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0085879_55	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0085879_56	Structural annotation	PF13463, MF_01909, NF033788, COG1846	NA	NA
UHGV-0085879_60	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0085879_60	UniRef90	UniRef90_G9R0Z0	HNHc domain-containing protein	NA
UHGV-0085879_60	eggNOG-mapper	360911.EAT1b_0007	NUMOD4 motif	NA
UHGV-0085879_60	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0085879_60	Structural annotation	PF13392, PF07453	NA	NA
UHGV-0085879_62	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0085879_62	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0085879_62	UniRef90	UniRef90_UPI000E4FA7A6	site-specific DNA-methyltransferase	NA
UHGV-0085879_62	eggNOG-mapper	1314.HKU360_01238	DNA modification methylase DNA replication, recombination, and repair	NA
UHGV-0085879_62	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0085879_62	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0085879_62	COG	COG0863	DNA modification methylase	NA
UHGV-0085879_62	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0085879_64	PHROG	phrog_585	NA	unknown function