UHGV-0085882

Genome information

vOTU vOTU-019874

Genome length 32,215 bps

CDS count 47

Completeness 86.31% (medium-quality)

geNomad score 0.9677

Prediction confidence Confident

Genome information
Genome ID	UHGV-0085882
vOTU ID	vOTU-019874
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_140780
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.31% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9677
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.65
Jumbo phage	No

Genome content
Genome length	32,215 bps
GC content	41.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	92.30%
Average CDS length	639.57 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0085882_1	KOfam	K14059	int; integrase	NA
UHGV-0085882_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0085882_1	UniRef90	UniRef90_UPI001D0153FD	site-specific integrase	NA
UHGV-0085882_1	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-0085882_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0085882_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0085882_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0085882_2	PHROG	phrog_29766	NA	unknown function
UHGV-0085882_2	eggNOG-mapper	157924.Q7Y4M2_9CAUD	NA	NA
UHGV-0085882_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0085882_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0085882_4	UniRef90	UniRef90_UPI00195FD795	XRE family transcriptional regulator	NA
UHGV-0085882_4	eggNOG-mapper	411490.ANACAC_00815	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0085882_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0085882_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0085882_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0085882_4	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0085882_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0085882_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0085882_5	UniRef90	UniRef90_C0CQZ3	HTH cro/C1-type domain-containing protein	NA
UHGV-0085882_5	eggNOG-mapper	479434.Sthe_2230	sequence-specific DNA binding	NA
UHGV-0085882_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0085882_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0085882_5	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0085882_9	Structural annotation	PF20063	NA	NA
UHGV-0085882_11	PHROG	phrog_3253	NA	unknown function
UHGV-0085882_14	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0085882_14	UniRef90	UniRef90_UPI001439856C	ERF family protein	NA
UHGV-0085882_14	eggNOG-mapper	1522092.A0A090D840_9CAUD	ERF superfamily	NA
UHGV-0085882_14	Pfam	PF04404	ERF superfamily	ERF
UHGV-0085882_14	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0085882_15	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0085882_15	UniRef90	UniRef90_A0A285PU94	Recombinase NinB	NA
UHGV-0085882_15	eggNOG-mapper	1410650.JHWL01000003_gene2850	NA	NA
UHGV-0085882_15	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0085882_16	PHROG	phrog_7566	NA	unknown function
UHGV-0085882_16	UniRef90	UniRef90_UPI001CD6F8EA	phosphoenolpyruvate carboxykinase	NA
UHGV-0085882_16	eggNOG-mapper	742733.HMPREF9469_01847	NA	NA
UHGV-0085882_17	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0085882_17	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0085882_17	UniRef90	UniRef90_A0A1C5MBR6	Endodeoxyribonuclease RusA	NA
UHGV-0085882_17	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0085882_17	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0085882_17	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0085882_17	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0085882_18	PHROG	phrog_15768	NA	unknown function
UHGV-0085882_18	UniRef90	UniRef90_A0A1H8R574	Helix-turn-helix domain-containing protein	NA
UHGV-0085882_18	eggNOG-mapper	742740.HMPREF9474_03492	DnaD domain protein	NA
UHGV-0085882_18	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0085882_18	Structural annotation	PF01978, MF_01819, TIGR01889, COG1846	NA	NA
UHGV-0085882_19	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0085882_19	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0085882_19	UniRef90	UniRef90_UPI00156EFE80	ATP-binding protein	NA
UHGV-0085882_19	eggNOG-mapper	1408324.JNJK01000002_gene3204	Bacterial dnaA protein	NA
UHGV-0085882_19	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0085882_19	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0085882_19	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0085882_21	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0085882_21	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0085882_21	UniRef90	UniRef90_A0A448W1P4	Chromosome-partitioning protein parB	NA
UHGV-0085882_21	eggNOG-mapper	411461.DORFOR_01144	Belongs to the ParB family	NA
UHGV-0085882_21	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0085882_21	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0085882_21	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0085882_21	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0085882_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0085882_24	eggNOG-mapper	742765.HMPREF9457_02116	NA	NA
UHGV-0085882_24	Structural annotation	PF02996	NA	NA
UHGV-0085882_25	Structural annotation	PF04381, MF_00194, NF001460, COG2974	NA	NA
UHGV-0085882_26	UniRef90	UniRef90_UPI0015704FD2	NA	NA
UHGV-0085882_26	Structural annotation	PF19363, PF04471, COG1787, COG3355	NA	NA
UHGV-0085882_27	PHROG	phrog_2412	NA	unknown function
UHGV-0085882_27	UniRef90	UniRef90_UPI001E414EFE	KGG domain-containing protein	NA
UHGV-0085882_27	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-0085882_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0085882_28	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0085882_28	UniRef90	UniRef90_F3BAE1	PBSX family phage terminase, large subunit	NA
UHGV-0085882_28	eggNOG-mapper	742723.HMPREF9477_00911	Phage terminase large subunit	NA
UHGV-0085882_28	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0085882_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0085882_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0085882_28	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0085882_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-0085882_29	UniRef90	UniRef90_UPI00129D5852	phage capsid protein	NA
UHGV-0085882_29	eggNOG-mapper	658655.HMPREF0988_02564	NA	NA
UHGV-0085882_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0085882_30	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0085882_30	UniRef90	UniRef90_A0A396QCB6	Minor capsid protein	NA
UHGV-0085882_30	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-0085882_30	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0085882_30	COG	COG2369	NA	NA
UHGV-0085882_30	Structural annotation	PF06152, PF12636	NA	NA
UHGV-0085882_31	PHROG	phrog_27009	NA	unknown function
UHGV-0085882_32	PHROG	phrog_13199	NA	unknown function
UHGV-0085882_32	Structural annotation	PF14083	NA	NA
UHGV-0085882_33	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0085882_33	UniRef90	UniRef90_UPI001C8E2BFB	phage scaffolding protein	NA
UHGV-0085882_33	eggNOG-mapper	411470.RUMGNA_02218	COG NOG36366 non supervised orthologous group	NA
UHGV-0085882_33	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0085882_33	Structural annotation	PF06810	NA	NA
UHGV-0085882_34	PHROG	phrog_422	major head protein	head and packaging
UHGV-0085882_34	eggNOG-mapper	411470.RUMGNA_02219	NA	NA
UHGV-0085882_34	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0085882_35	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0085882_35	eggNOG-mapper	536233.CLO_0887	NA	NA
UHGV-0085882_36	PHROG	phrog_3366	NA	unknown function
UHGV-0085882_36	eggNOG-mapper	411470.RUMGNA_02221	NA	NA
UHGV-0085882_36	Pfam	PF20536	NA	DUF6751
UHGV-0085882_36	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0085882_37	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0085882_37	UniRef90	UniRef90_UPI001C8E2A32	minor capsid protein	NA
UHGV-0085882_37	eggNOG-mapper	411470.RUMGNA_02222	NA	NA
UHGV-0085882_37	Structural annotation	PF11114	NA	NA
UHGV-0085882_38	PHROG	phrog_3266	tail completion	connector
UHGV-0085882_38	eggNOG-mapper	658655.HMPREF0988_02556	NA	NA
UHGV-0085882_38	Structural annotation	PF12691	NA	NA
UHGV-0085882_39	PHROG	phrog_3099	NA	unknown function
UHGV-0085882_39	eggNOG-mapper	1235792.C808_05373	NA	NA
UHGV-0085882_39	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0085882_40	PHROG	phrog_4450	NA	unknown function
UHGV-0085882_40	eggNOG-mapper	1235792.C808_05374	NA	NA
UHGV-0085882_40	Pfam	PF20378	NA	DUF6673
UHGV-0085882_40	Structural annotation	PF20378	NA	NA
UHGV-0085882_41	PHROG	phrog_706	NA	unknown function
UHGV-0085882_41	UniRef90	UniRef90_UPI001C8DC2CB	Gp15 family bacteriophage protein	NA
UHGV-0085882_41	eggNOG-mapper	658655.HMPREF0988_02553	Bacteriophage Gp15 protein	NA
UHGV-0085882_41	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0085882_41	Structural annotation	PF06854	NA	NA
UHGV-0085882_42	PHROG	phrog_5493	tail length tape measure protein	tail
UHGV-0085882_42	UniRef90	UniRef90_UPI001564EFA6	tape measure protein	NA
UHGV-0085882_42	eggNOG-mapper	411470.RUMGNA_02228	tape measure	NA
UHGV-0085882_42	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0085882_42	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0085882_42	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0085882_42	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0085882_43	UniRef90	UniRef90_UPI00156E3DDD	phage tail protein	NA
UHGV-0085882_43	eggNOG-mapper	658655.HMPREF0988_02551	NA	NA
UHGV-0085882_43	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0085882_44	PHROG	phrog_538	minor tail protein	tail
UHGV-0085882_44	UniRef90	UniRef90_A0A4R2LD50	ReqiPepy6 Gp37-like protein	NA
UHGV-0085882_44	eggNOG-mapper	742723.HMPREF9477_00895	NA	NA
UHGV-0085882_44	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0085882_44	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0085882_45	PHROG	phrog_38190	NA	unknown function
UHGV-0085882_45	UniRef90	UniRef90_A0A416LDW9	Mtd_N domain-containing protein	NA
UHGV-0085882_45	eggNOG-mapper	742733.HMPREF9469_01803	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0085882_45	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0085882_46	PHROG	phrog_24267	NA	unknown function
UHGV-0085882_46	UniRef90	UniRef90_A0A4U8Q6R4	Baseplate wedge subunit and tail pin	NA
UHGV-0085882_46	eggNOG-mapper	1235799.C818_01005	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0085882_46	COG	COG4675	Phage tail collar domain	NA
UHGV-0085882_46	Structural annotation	COG4675	NA	NA
UHGV-0085882_47	PHROG	phrog_9994	NA	unknown function
UHGV-0085882_47	UniRef90	UniRef90_UPI000C76CD77	H-type lectin domain-containing protein	NA
UHGV-0085882_47	eggNOG-mapper	742723.HMPREF9477_00894	NA	NA