UHGV-0085895

Genome information

Genome length 36,181 bps

CDS count 61

Completeness 94.15% (high-quality)

geNomad score 0.9782

Prediction confidence Confident

Genome information
Genome ID	UHGV-0085895
vOTU ID	vOTU-063983
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_167674
BioSample	SAMEA3178936
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.15% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9782
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.92
Jumbo phage	No

Genome content
Genome length	36,181 bps
GC content	47.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	91.12%
Average CDS length	547.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0085895_1	KOfam	K14059	int; integrase	NA
UHGV-0085895_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0085895_1	UniRef90	UniRef90_A0A417GFS1	Site-specific integrase	NA
UHGV-0085895_1	eggNOG-mapper	1304866.K413DRAFT_3002	Belongs to the 'phage' integrase family	NA
UHGV-0085895_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0085895_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0085895_1	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0085895_2	PHROG	phrog_31229	NA	unknown function
UHGV-0085895_2	eggNOG-mapper	1121333.JMLH01000001_gene1904	NA	NA
UHGV-0085895_3	UniRef90	UniRef90_A0A1F8LWI8	Flg_new_2 domain-containing protein	NA
UHGV-0085895_3	eggNOG-mapper	1280676.AUJO01000035_gene2160	NA	NA
UHGV-0085895_3	Structural annotation	PF07718, PF02883, NF007398, COG3121	NA	NA
UHGV-0085895_4	PHROG	phrog_87	metallo-protease	other
UHGV-0085895_4	UniRef90	UniRef90_A0A396LGB6	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0085895_4	eggNOG-mapper	553973.CLOHYLEM_07298	IrrE N-terminal-like domain	NA
UHGV-0085895_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0085895_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0085895_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0085895_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0085895_5	UniRef90	UniRef90_UPI001BC112C2	Helix-turn-helix domain-containing protein	NA
UHGV-0085895_5	eggNOG-mapper	33035.JPJF01000055_gene1671	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0085895_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0085895_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0085895_5	Structural annotation	PF13443, MF_00535, NF041951, COG3655	NA	NA
UHGV-0085895_6	UniRef90	UniRef90_UPI001BBB62AE	Helix-turn-helix transcriptional regulator	NA
UHGV-0085895_6	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0085895_7	PHROG	phrog_643	transcriptional regulator	transcription regulation
UHGV-0085895_7	UniRef90	UniRef90_UPI001921B44D	aspartate ammonia-lyase	NA
UHGV-0085895_7	eggNOG-mapper	562743.JH976434_gene1050	NA	NA
UHGV-0085895_7	Structural annotation	PF11195	NA	NA
UHGV-0085895_8	PHROG	phrog_750	NA	unknown function
UHGV-0085895_8	eggNOG-mapper	478749.BRYFOR_08527	NA	NA
UHGV-0085895_8	Structural annotation	PF13835, NF040858	NA	NA
UHGV-0085895_9	eggNOG-mapper	1217656.F964_02233	Helix-turn-helix XRE-family like proteins	NA
UHGV-0085895_9	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0085895_9	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0085895_15	PHROG	phrog_30234	NA	unknown function
UHGV-0085895_15	eggNOG-mapper	33035.JPJF01000071_gene4461	NA	NA
UHGV-0085895_16	PHROG	phrog_14970	NA	unknown function
UHGV-0085895_16	eggNOG-mapper	411468.CLOSCI_00315	double-strand break repair protein	NA
UHGV-0085895_16	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0085895_16	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0085895_17	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0085895_17	eggNOG-mapper	411468.CLOSCI_00314	NA	NA
UHGV-0085895_17	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0085895_18	PHROG	phrog_7566	NA	unknown function
UHGV-0085895_18	UniRef90	UniRef90_A0A417GG52	Phosphoenolpyruvate carboxykinase	NA
UHGV-0085895_18	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0085895_19	PHROG	phrog_4880	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0085895_19	eggNOG-mapper	796940.HMPREF9628_00167	NA	NA
UHGV-0085895_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0085895_19	Structural annotation	PF03444, MF_01911, TIGR01610, COG5529	NA	NA
UHGV-0085895_20	Structural annotation	PF04703, MF_01909, NF033788, COG0640	NA	NA
UHGV-0085895_22	UniRef90	UniRef90_A0A3R6U5B0	LexA_DNA_bind domain-containing protein	NA
UHGV-0085895_22	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0085895_22	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0085895_24	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0085895_24	UniRef90	UniRef90_A0A173Z178	PUA domain (Predicted RNA-binding domain)	NA
UHGV-0085895_24	eggNOG-mapper	397291.C804_06557	NA	NA
UHGV-0085895_24	PADLOC	SspD_00001	SspD	SSP
UHGV-0085895_24	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0085895_24	Structural annotation	PF01507, MF_01161, NF005316, COG1606	NA	NA
UHGV-0085895_25	eggNOG-mapper	1235800.C819_02246	NA	NA
UHGV-0085895_27	PHROG	phrog_6568	NA	unknown function
UHGV-0085895_27	eggNOG-mapper	742733.HMPREF9469_05046	NA	NA
UHGV-0085895_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0085895_28	UniRef90	UniRef90_A0A417GFN5	RNA polymerase subunit sigma-70	NA
UHGV-0085895_28	eggNOG-mapper	411902.CLOBOL_05672	NA	NA
UHGV-0085895_28	Structural annotation	PF02996	NA	NA
UHGV-0085895_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0085895_30	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0085895_30	UniRef90	UniRef90_A0A3R6UIT1	Terminase small subunit	NA
UHGV-0085895_30	eggNOG-mapper	1321778.HMPREF1982_02686	Terminase Small Subunit	NA
UHGV-0085895_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0085895_30	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0085895_30	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0085895_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0085895_31	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0085895_31	UniRef90	UniRef90_UPI000B896FAD	terminase family protein	NA
UHGV-0085895_31	eggNOG-mapper	1282664.H354_06621	Phage terminase, large subunit, PBSX family	NA
UHGV-0085895_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0085895_31	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0085895_32	PHROG	phrog_533	portal protein	head and packaging
UHGV-0085895_32	UniRef90	UniRef90_A0A417GP99	Capsid protein	NA
UHGV-0085895_32	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0085895_32	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0085895_33	PHROG	phrog_25639	NA	unknown function
UHGV-0085895_33	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0085895_34	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0085895_34	UniRef90	UniRef90_A0A417GP81	ADPrib_exo_Tox domain-containing protein	NA
UHGV-0085895_34	eggNOG-mapper	742740.HMPREF9474_03503	Phage minor capsid protein 2	NA
UHGV-0085895_34	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0085895_34	COG	COG2369	NA	NA
UHGV-0085895_34	Structural annotation	PF06152	NA	NA
UHGV-0085895_36	PHROG	phrog_3675	NA	unknown function
UHGV-0085895_36	UniRef90	UniRef90_A0A3E2UCU7	Dihydrolipoyl dehydrogenase	NA
UHGV-0085895_36	eggNOG-mapper	585501.HMPREF6123_0838	YjcQ protein	NA
UHGV-0085895_36	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0085895_36	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0085895_37	PHROG	phrog_774	NA	unknown function
UHGV-0085895_37	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0085895_38	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0085895_38	eggNOG-mapper	1304866.K413DRAFT_0806	NA	NA
UHGV-0085895_39	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0085895_40	PHROG	phrog_422	major head protein	head and packaging
UHGV-0085895_40	UniRef90	UniRef90_A0A417GPA1	Capsid protein	NA
UHGV-0085895_40	eggNOG-mapper	742740.HMPREF9474_03505	NA	NA
UHGV-0085895_40	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0085895_41	PHROG	phrog_1378	NA	unknown function
UHGV-0085895_41	eggNOG-mapper	742740.HMPREF9474_03506	NA	NA
UHGV-0085895_42	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0085895_42	eggNOG-mapper	1298920.KI911353_gene4848	NA	NA
UHGV-0085895_43	PHROG	phrog_8710	NA	unknown function
UHGV-0085895_43	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-0085895_43	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0085895_44	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0085895_44	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0085895_45	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0085895_45	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-0085895_45	eggNOG-mapper	33035.JPJF01000093_gene2247	NA	NA
UHGV-0085895_45	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0085895_45	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0085895_46	PHROG	phrog_820	major tail protein	tail
UHGV-0085895_46	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0085895_46	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0085895_47	PHROG	phrog_8300	NA	unknown function
UHGV-0085895_47	eggNOG-mapper	585501.HMPREF6123_0828	NA	NA
UHGV-0085895_47	Structural annotation	PF06854	NA	NA
UHGV-0085895_48	PHROG	phrog_8355	NA	unknown function
UHGV-0085895_48	UniRef90	UniRef90_UPI001D0684E3	bacteriophage Gp15 family protein	NA
UHGV-0085895_48	eggNOG-mapper	33035.JPJF01000093_gene2244	NA	NA
UHGV-0085895_48	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0085895_48	Structural annotation	PF06854	NA	NA
UHGV-0085895_49	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0085895_49	UniRef90	UniRef90_A0A174SV65	Phage-like protein	NA
UHGV-0085895_49	eggNOG-mapper	742740.HMPREF9474_03514	tape measure	NA
UHGV-0085895_49	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0085895_49	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0085895_50	PHROG	phrog_1194	NA	unknown function
UHGV-0085895_50	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0085895_50	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0085895_51	PHROG	phrog_13879	NA	unknown function
UHGV-0085895_51	eggNOG-mapper	742740.HMPREF9474_03516	NA	NA
UHGV-0085895_51	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0085895_52	PHROG	phrog_18725	NA	unknown function
UHGV-0085895_52	eggNOG-mapper	1298920.KI911353_gene4838	NA	NA
UHGV-0085895_53	eggNOG-mapper	1298920.KI911353_gene4837	NA	NA
UHGV-0085895_54	PHROG	phrog_13589	NA	unknown function
UHGV-0085895_54	eggNOG-mapper	1298920.KI911353_gene541	ATPase involved in DNA repair	NA
UHGV-0085895_54	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0085895_54	Structural annotation	PF21253, NF038128	NA	NA
UHGV-0085895_55	Structural annotation	PF21253, NF038128, COG5156	NA	NA
UHGV-0085895_57	PHROG	phrog_1129	holin	lysis
UHGV-0085895_57	UniRef90	UniRef90_UPI0013F5D614	phage holin family protein	NA
UHGV-0085895_57	eggNOG-mapper	742740.HMPREF9474_03522	NA	NA
UHGV-0085895_57	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0085895_57	Structural annotation	PF06946	NA	NA
UHGV-0085895_60	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0085895_60	PHROG	phrog_1794	amidase	lysis
UHGV-0085895_60	UniRef90	UniRef90_D6DIW1	Negative regulator of beta-lactamase expression	NA
UHGV-0085895_60	eggNOG-mapper	1304866.K413DRAFT_1930	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0085895_60	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0085895_60	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0085895_60	Structural annotation	PF01510, PF18342, MF_04111, NF008758, NF033202, COG5632	NA	NA
UHGV-0085895_61	PHROG	phrog_18218	NA	unknown function
UHGV-0085895_61	eggNOG-mapper	742733.HMPREF9469_02858	NA	NA