UHGV-0085901

Genome information

Genome length 24,130 bps

CDS count 36

Completeness 66.54% (medium-quality)

geNomad score 0.9630

Prediction confidence Confident

Genome information
Genome ID	UHGV-0085901
vOTU ID	vOTU-040772
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_167671
BioSample	SAMEA3178936
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.54% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9630
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.11
Jumbo phage	No

Genome content
Genome length	24,130 bps
GC content	44.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	89.08%
Average CDS length	598.50 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0085901_1	eggNOG-mapper	397290.C810_01514	NA	NA
UHGV-0085901_4	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0085901_4	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-0085901_4	eggNOG-mapper	1304866.K413DRAFT_3028	NA	NA
UHGV-0085901_4	Structural annotation	PF04545	NA	NA
UHGV-0085901_5	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0085901_5	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0085901_5	UniRef90	UniRef90_A0A0U5K229	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0085901_5	eggNOG-mapper	411902.CLOBOL_05671	COG COG0338 Site-specific DNA methylase	NA
UHGV-0085901_5	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-0085901_5	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0085901_5	COG	COG0338	DNA-adenine methylase	NA
UHGV-0085901_5	Structural annotation	PF02086, MF_01872, TIGR00571, COG0338	NA	NA
UHGV-0085901_7	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0085901_7	UniRef90	UniRef90_D9SQ19	Prophage LambdaBa04, GP54	NA
UHGV-0085901_7	eggNOG-mapper	573061.Clocel_2442	HNH endonuclease	NA
UHGV-0085901_7	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0085901_8	PHROG	phrog_1066	NA	unknown function
UHGV-0085901_8	eggNOG-mapper	1341151.ASZU01000004_gene265	NA	NA
UHGV-0085901_8	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0085901_9	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0085901_9	UniRef90	UniRef90_A0A2T3EZM3	Terminase large subunit	NA
UHGV-0085901_9	eggNOG-mapper	626523.GCWU000342_01028	Phage terminase-like protein large subunit	NA
UHGV-0085901_9	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0085901_9	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0085901_9	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0085901_9	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0085901_10	PHROG	phrog_12	portal protein	head and packaging
UHGV-0085901_10	UniRef90	UniRef90_A0A414AVF4	Phage portal protein	NA
UHGV-0085901_10	eggNOG-mapper	1235793.C809_01918	Phage portal protein	NA
UHGV-0085901_10	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0085901_10	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0085901_10	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0085901_11	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0085901_11	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0085901_11	UniRef90	UniRef90_A0A174XQS2	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0085901_11	eggNOG-mapper	1280689.AUJC01000011_gene1520	Belongs to the peptidase S14 family	NA
UHGV-0085901_11	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0085901_11	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0085901_11	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0085901_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-0085901_12	UniRef90	UniRef90_A0A174XIH6	Phage major capsid protein, HK97 family	NA
UHGV-0085901_12	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0085901_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0085901_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0085901_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0085901_12	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0085901_13	PHROG	phrog_5223	neck protein	connector
UHGV-0085901_13	UniRef90	UniRef90_A8SKP1	Putative phage DNA packaging protein	NA
UHGV-0085901_13	eggNOG-mapper	411465.PEPMIC_00737	NA	NA
UHGV-0085901_13	Structural annotation	TIGR01560	NA	NA
UHGV-0085901_14	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0085901_14	eggNOG-mapper	642492.Clole_1861	head-tail adaptor	NA
UHGV-0085901_14	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0085901_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0085901_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0085901_15	Structural annotation	TIGR01725	NA	NA
UHGV-0085901_16	Structural annotation	PF06141	NA	NA
UHGV-0085901_17	PHROG	phrog_88	major tail protein	tail
UHGV-0085901_17	UniRef90	UniRef90_A0A414AVG1	Phage tail protein	NA
UHGV-0085901_17	eggNOG-mapper	742740.HMPREF9474_04299	NA	NA
UHGV-0085901_17	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0085901_17	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0085901_19	PHROG	phrog_2276	tail length tape measure protein	tail
UHGV-0085901_19	UniRef90	UniRef90_A0A414AVE7	PhageMin_Tail domain-containing protein	NA
UHGV-0085901_19	eggNOG-mapper	742740.HMPREF9474_04296	Phage tail tape measure protein TP901	NA
UHGV-0085901_19	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0085901_19	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0085901_19	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0085901_20	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0085901_20	UniRef90	UniRef90_UPI00189CF998	DNRLRE domain-containing protein	NA
UHGV-0085901_20	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-0085901_20	Structural annotation	PF06995, PF02010, MF_04116, TIGR02126, NF041431, COG3499, COG2372	NA	NA
UHGV-0085901_21	PHROG	phrog_26795	NA	unknown function
UHGV-0085901_21	eggNOG-mapper	742740.HMPREF9474_04294	NA	NA
UHGV-0085901_21	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0085901_22	PHROG	phrog_12764	NA	unknown function
UHGV-0085901_22	Structural annotation	PF01176, MF_00085, TIGR00523, COG0361	NA	NA
UHGV-0085901_23	PHROG	phrog_30004	NA	unknown function
UHGV-0085901_23	UniRef90	UniRef90_UPI001899CC0D	BppU family phage baseplate upper protein	NA
UHGV-0085901_23	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0085901_23	Structural annotation	PF10651	NA	NA
UHGV-0085901_24	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0085901_24	PHROG	phrog_1	integrase	integration and excision
UHGV-0085901_24	UniRef90	UniRef90_A0A174H2W6	Integrase family protein	NA
UHGV-0085901_24	eggNOG-mapper	610130.Closa_3343	Belongs to the 'phage' integrase family	NA
UHGV-0085901_24	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0085901_24	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0085901_24	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0085901_27	eggNOG-mapper	742740.HMPREF9474_04291	NA	NA
UHGV-0085901_28	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0085901_28	Structural annotation	NF040910	NA	NA
UHGV-0085901_29	PHROG	phrog_199	holin	lysis
UHGV-0085901_29	UniRef90	UniRef90_A0A414ADK3	Holin	NA
UHGV-0085901_29	eggNOG-mapper	411902.CLOBOL_05644	Bacteriophage holin family	NA
UHGV-0085901_29	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0085901_29	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0085901_29	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0085901_29	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0085901_30	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0085901_30	PHROG	phrog_2649	endolysin	lysis
UHGV-0085901_30	UniRef90	UniRef90_R5LTY0	Peptidase_M15_4 domain-containing protein	NA
UHGV-0085901_30	eggNOG-mapper	1123075.AUDP01000024_gene1109	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0085901_30	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0085901_30	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0085901_30	Structural annotation	PF02557, PF19127, MF_01924, NF007557, TIGR04035, COG2173	NA	NA
UHGV-0085901_31	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0085901_31	PHROG	phrog_95	integrase	integration and excision
UHGV-0085901_31	UniRef90	UniRef90_R5MBZ3	Putative integrase bacteriophage 370.1	NA
UHGV-0085901_31	eggNOG-mapper	1157490.EL26_02935	Recombinase	NA
UHGV-0085901_31	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0085901_31	Pfam	PF07508	Recombinase	Recombinase
UHGV-0085901_31	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0085901_31	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0085901_33	AcrCatalog	cluster_32378	NA	NA
UHGV-0085901_34	UniRef90	UniRef90_A0A6N2SJV3	HicB family protein	NA
UHGV-0085901_34	eggNOG-mapper	1378168.N510_03076	NA	NA
UHGV-0085901_34	Pfam	PF19807	NA	DUF6290
UHGV-0085901_35	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0085901_35	PHROG	phrog_2649	endolysin	lysis
UHGV-0085901_35	UniRef90	UniRef90_R5M171	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0085901_35	eggNOG-mapper	742733.HMPREF9469_01368	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0085901_35	AcrCatalog	cluster_9940	NA	NA
UHGV-0085901_35	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0085901_35	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0085901_35	Structural annotation	PF02557, PF19127, MF_01924, NF007557, TIGR04035, COG2173	NA	NA