UHGV-0085916

Genome information

Genome length 51,788 bps

CDS count 74

Completeness 94.09% (high-quality)

geNomad score 0.9752

Prediction confidence Confident

Genome information
Genome ID	UHGV-0085916
vOTU ID	vOTU-065106
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_195601
BioSample	SAMEA3449366
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.09% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	4
Recoded stop codon	No

Viral signal
geNomad score	0.9752
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	8.29
Jumbo phage	No

Genome content
Genome length	51,788 bps
GC content	48.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	74
CDS density	89.37%
Average CDS length	627.08 bps
tRNA count	2
Suppressor tRNA genes	1

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0085916_1	PHROG	phrog_38864	NA	unknown function
UHGV-0085916_2	Structural annotation	PF02185	NA	NA
UHGV-0085916_3	Pfam	PF07196	Flagellin hook IN motif	Flagellin_IN
UHGV-0085916_4	Pfam	PF13385	Concanavalin A-like lectin/glucanases superfamily	Laminin_G_3
UHGV-0085916_4	COG	COG0515	Serine/threonine protein kinase	NA
UHGV-0085916_4	Structural annotation	PF13385, PF00629, MF_00825, TIGR04362, COG4766	NA	NA
UHGV-0085916_5	PHROG	phrog_17422	NA	unknown function
UHGV-0085916_5	UniRef90	UniRef90_A0A016ARD3	Collagen triple helix repeat family protein	NA
UHGV-0085916_5	eggNOG-mapper	445970.ALIPUT_00692	cellulase activity	NA
UHGV-0085916_5	COG	COG4926	Phage-related protein	NA
UHGV-0085916_6	UniRef90	UniRef90_UPI00189DA562	NA	NA
UHGV-0085916_6	eggNOG-mapper	679190.HMPREF0650_0939	NA	NA
UHGV-0085916_6	Pfam	PF13711	NA	DUF4160
UHGV-0085916_6	Structural annotation	PF13711	NA	NA
UHGV-0085916_7	UniRef90	UniRef90_UPI001898BBA4	NA	NA
UHGV-0085916_7	eggNOG-mapper	1235788.C802_03301	NA	NA
UHGV-0085916_7	Pfam	PF10387	NA	DUF2442
UHGV-0085916_7	Structural annotation	PF10387, PF13560, NF041951, COG3655	NA	NA
UHGV-0085916_8	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0085916_8	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0085916_8	UniRef90	UniRef90_B0MVQ4	Type I restriction enzyme HsdR protein N-terminal domain protein	NA
UHGV-0085916_8	eggNOG-mapper	445970.ALIPUT_01215	Type I restriction enzyme HsdR protein N-terminal domain protein	NA
UHGV-0085916_8	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0085916_8	COG	COG4748	NA	NA
UHGV-0085916_8	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-0085916_10	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0085916_10	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0085916_10	UniRef90	UniRef90_UPI001898E950	phage antirepressor	NA
UHGV-0085916_10	eggNOG-mapper	1283284.AZUK01000001_gene2638	ORF located using Glimmer RBSfinder	NA
UHGV-0085916_10	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0085916_10	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0085916_10	COG	COG3617	Prophage antirepressor	NA
UHGV-0085916_10	Structural annotation	PF02498, PF03374, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0085916_11	PHROG	phrog_6305	tail protein	tail
UHGV-0085916_11	UniRef90	UniRef90_C6ZA45	Putative phage tail component domain protein	NA
UHGV-0085916_11	eggNOG-mapper	445970.ALIPUT_00695	NA	NA
UHGV-0085916_11	Structural annotation	PF11514, TIGR01633, COG4722	NA	NA
UHGV-0085916_12	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0085916_12	UniRef90	UniRef90_UPI001297521A	tape measure protein	NA
UHGV-0085916_12	eggNOG-mapper	445970.ALIPUT_00696	NA	NA
UHGV-0085916_12	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0085916_12	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0085916_12	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0085916_12	Structural annotation	PF20155	NA	NA
UHGV-0085916_13	Structural annotation	PF20336	NA	NA
UHGV-0085916_14	PHROG	phrog_6767	NA	unknown function
UHGV-0085916_14	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0085916_15	PHROG	phrog_5597	NA	unknown function
UHGV-0085916_15	Structural annotation	PF05657	NA	NA
UHGV-0085916_16	PHROG	phrog_5377	NA	unknown function
UHGV-0085916_16	UniRef90	UniRef90_UPI0008DA4DD0	HK97 gp10 family phage protein	NA
UHGV-0085916_16	eggNOG-mapper	445970.ALIPUT_00701	NA	NA
UHGV-0085916_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0085916_17	PHROG	phrog_13251	NA	unknown function
UHGV-0085916_17	Structural annotation	PF20536	NA	NA
UHGV-0085916_18	PHROG	phrog_16646	NA	unknown function
UHGV-0085916_18	eggNOG-mapper	411477.PARMER_01697	NA	NA
UHGV-0085916_18	Pfam	PF20449	NA	DUF6706
UHGV-0085916_18	Structural annotation	PF20449	NA	NA
UHGV-0085916_19	PHROG	phrog_29	major head protein	head and packaging
UHGV-0085916_19	UniRef90	UniRef90_A0A316NWE1	Major capsid protein E	NA
UHGV-0085916_19	eggNOG-mapper	445970.ALIPUT_00704	NA	NA
UHGV-0085916_19	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0085916_19	Structural annotation	PF03864, MF_04133, NF041162, COG4834	NA	NA
UHGV-0085916_20	eggNOG-mapper	888059.HMPREF9071_2141	Head fiber protein	NA
UHGV-0085916_20	Structural annotation	PF21430, NF009633	NA	NA
UHGV-0085916_21	PHROG	phrog_5824	NA	unknown function
UHGV-0085916_21	eggNOG-mapper	445970.ALIPUT_00706	NA	NA
UHGV-0085916_23	KOfam	K21138	HDDC3; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [EC:3.1.7.2]	NA
UHGV-0085916_23	PHROG	phrog_990	metal-dependent phosphohydrolase	other
UHGV-0085916_23	UniRef90	UniRef90_UPI00037C6F5E	HD domain-containing protein	NA
UHGV-0085916_23	eggNOG-mapper	411901.BACCAC_01146	HD domain	NA
UHGV-0085916_23	Pfam	PF13328	HD domain	HD_4
UHGV-0085916_23	COG	COG0317	(p)ppGpp synthase/hydrolase, HD superfamily	NA
UHGV-0085916_23	Structural annotation	PF13328	NA	NA
UHGV-0085916_24	PHROG	phrog_35295	NA	unknown function
UHGV-0085916_24	UniRef90	UniRef90_A0A143XJU3	LPD3 domain-containing protein	NA
UHGV-0085916_24	eggNOG-mapper	445970.ALIPUT_01191	NA	NA
UHGV-0085916_24	Structural annotation	PF06152, TIGR00691, COG2357	NA	NA
UHGV-0085916_25	PHROG	phrog_64	portal protein	head and packaging
UHGV-0085916_25	UniRef90	UniRef90_B0MVS6	Putative phage portal protein, SPP1 family	NA
UHGV-0085916_25	eggNOG-mapper	445970.ALIPUT_01192	phage portal protein, SPP1	NA
UHGV-0085916_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0085916_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0085916_26	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0085916_26	UniRef90	UniRef90_A0A174JFB0	Transposase and inactivated derivatives	NA
UHGV-0085916_26	eggNOG-mapper	445970.ALIPUT_01193	domain protein	NA
UHGV-0085916_26	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0085916_26	COG	COG5410	NA	NA
UHGV-0085916_26	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0085916_27	PHROG	phrog_15125	NA	unknown function
UHGV-0085916_27	UniRef90	UniRef90_A0A3N2M4P2	NA	NA
UHGV-0085916_27	eggNOG-mapper	1347393.HG726020_gene1343	NA	NA
UHGV-0085916_29	eggNOG-mapper	706437.HMPREF0813_02005	NA	NA
UHGV-0085916_30	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0085916_30	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0085916_30	UniRef90	UniRef90_UPI001E41025A	NA	NA
UHGV-0085916_30	eggNOG-mapper	1235788.C802_00067	ParB-like nuclease domain	NA
UHGV-0085916_30	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0085916_30	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0085916_30	Pfam	PF14386	NA	DUF4417
UHGV-0085916_30	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0085916_30	Structural annotation	PF14386, PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0085916_31	PHROG	phrog_1086	NA	unknown function
UHGV-0085916_31	UniRef90	UniRef90_UPI00189889AD	SH3 beta-barrel fold-containing protein	NA
UHGV-0085916_31	eggNOG-mapper	1227266.HMPREF1551_00531	WYL_2, Sm-like SH3 beta-barrel fold	NA
UHGV-0085916_31	Pfam	PF10902	WYL_2, Sm-like SH3 beta-barrel fold	WYL_2
UHGV-0085916_31	Structural annotation	PF10902	NA	NA
UHGV-0085916_32	eggNOG-mapper	445970.ALIPUT_01201	NA	NA
UHGV-0085916_36	UniRef90	UniRef90_B0MVP4	DNA-binding helix-turn-helix protein	NA
UHGV-0085916_36	eggNOG-mapper	445970.ALIPUT_01205	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0085916_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0085916_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0085916_37	UniRef90	UniRef90_A0A1Q6EL83	Hydroxyacid dehydrogenase	NA
UHGV-0085916_37	eggNOG-mapper	445970.ALIPUT_01206	Virulence protein RhuM family	NA
UHGV-0085916_37	Pfam	PF13310	Virulence protein RhuM family	Virulence_RhuM
UHGV-0085916_37	COG	COG3943	NA	NA
UHGV-0085916_37	Structural annotation	PF13310, TIGR02681, COG3943	NA	NA
UHGV-0085916_38	PHROG	phrog_10066	NA	unknown function
UHGV-0085916_38	UniRef90	UniRef90_UPI000B34E5E4	YopX family protein	NA
UHGV-0085916_38	eggNOG-mapper	411477.PARMER_02043	NA	NA
UHGV-0085916_38	Structural annotation	PF16090, MF_01549, TIGR00405	NA	NA
UHGV-0085916_39	PHROG	phrog_4792	anti-repressor	transcription regulation
UHGV-0085916_39	UniRef90	UniRef90_B0MVP7	ORF6N domain-containing protein	NA
UHGV-0085916_39	eggNOG-mapper	445970.ALIPUT_01207	PFAM ORF6N domain	NA
UHGV-0085916_39	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0085916_39	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0085916_39	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0085916_40	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0085916_40	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0085916_40	UniRef90	UniRef90_U6RXE7	HTH cro/C1-type domain-containing protein	NA
UHGV-0085916_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0085916_40	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0085916_42	KOfam	K07684	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	NA
UHGV-0085916_42	PHROG	phrog_10300	transcriptional regulator	transcription regulation
UHGV-0085916_42	UniRef90	UniRef90_B0MVQ7	Transcriptional regulator, LuxR family	NA
UHGV-0085916_42	eggNOG-mapper	445970.ALIPUT_01218	Transcriptional regulator, LuxR family	NA
UHGV-0085916_42	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0085916_42	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0085916_42	Structural annotation	PF00196, MF_00674, NF011940, COG2771	NA	NA
UHGV-0085916_44	Structural annotation	PF13973, PF17384, COG1862	NA	NA
UHGV-0085916_46	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0085916_46	Structural annotation	PF14090, TIGR00373, COG4738	NA	NA
UHGV-0085916_50	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0085916_50	UniRef90	UniRef90_A0A143XLQ7	Bro-N domain-containing protein	NA
UHGV-0085916_50	eggNOG-mapper	1347393.HG726021_gene281	AntA/AntB antirepressor	NA
UHGV-0085916_50	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0085916_50	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0085916_51	UniRef90	UniRef90_UPI0011C8A59E	tetratricopeptide repeat protein	NA
UHGV-0085916_51	eggNOG-mapper	679190.HMPREF0650_0362	ftsk spoiiie	NA
UHGV-0085916_51	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-0085916_56	UniRef90	UniRef90_UPI0018977E4B	Rad52/Rad22 family DNA repair protein	NA
UHGV-0085916_56	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0085916_56	Structural annotation	PF06420, TIGR00607, COG4712	NA	NA
UHGV-0085916_58	eggNOG-mapper	1121100.JCM6294_521	NA	NA
UHGV-0085916_59	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0085916_59	eggNOG-mapper	1127696.HMPREF9134_00465	NA	NA
UHGV-0085916_59	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0085916_61	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0085916_61	UniRef90	UniRef90_A0A2J0MMY6	Phg_2220_C domain-containing protein	NA
UHGV-0085916_61	eggNOG-mapper	1123058.KB894259_gene376	NA	NA
UHGV-0085916_61	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0085916_62	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0085916_62	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0085916_62	UniRef90	UniRef90_A0A396MBI3	Toprim domain-containing protein	NA
UHGV-0085916_62	eggNOG-mapper	742725.HMPREF9450_00879	NA	NA
UHGV-0085916_62	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0085916_62	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0085916_62	COG	COG0305	Replicative DNA helicase	NA
UHGV-0085916_62	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-0085916_63	PHROG	phrog_824	NA	unknown function
UHGV-0085916_63	UniRef90	UniRef90_A0A143XP07	VRR-NUC domain protein	NA
UHGV-0085916_63	eggNOG-mapper	445970.ALIPUT_00026	NA	NA
UHGV-0085916_64	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0085916_64	PHROG	phrog_31265	NA	unknown function
UHGV-0085916_64	UniRef90	UniRef90_UPI001898731D	pentapeptide repeat-containing protein	NA
UHGV-0085916_64	eggNOG-mapper	1226322.HMPREF1545_00011	Pentapeptide repeats (8 copies)	NA
UHGV-0085916_64	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0085916_64	Pfam	PF19062	NA	DUF5758
UHGV-0085916_64	COG	COG1357	NA	NA
UHGV-0085916_64	Structural annotation	PF19062, PF13599, NF011744, COG1357	NA	NA
UHGV-0085916_65	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0085916_65	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0085916_65	UniRef90	UniRef90_R7JQS9	Methyltransferase	NA
UHGV-0085916_65	eggNOG-mapper	1166018.FAES_1810	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0085916_65	PADLOC	MTase_II_00173	Type II methyltransferase	RM
UHGV-0085916_65	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0085916_65	COG	COG0863	DNA modification methylase	NA
UHGV-0085916_65	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0085916_66	PHROG	phrog_20182	NA	unknown function
UHGV-0085916_68	PHROG	phrog_874	NA	unknown function
UHGV-0085916_68	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-0085916_68	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0085916_69	PHROG	phrog_98	NA	unknown function
UHGV-0085916_69	UniRef90	UniRef90_UPI0018987415	YopX family protein	NA
UHGV-0085916_69	eggNOG-mapper	742767.HMPREF9456_02399	YopX protein	NA
UHGV-0085916_69	Pfam	PF09643	YopX protein	YopX
UHGV-0085916_69	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0085916_69	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0085916_70	PHROG	phrog_20807	NA	unknown function
UHGV-0085916_70	UniRef90	UniRef90_A0A8G0QLG7	DNA injection channel protein A	NA
UHGV-0085916_70	eggNOG-mapper	1189620.AJXL01000069_gene3351	heat shock protein binding	NA
UHGV-0085916_70	COG	COG0484	DnaJ-class molecular chaperone with C-terminal Zn finger domain	NA
UHGV-0085916_70	Structural annotation	PF00684, TIGR00663, COG0592	NA	NA
UHGV-0085916_74	UniRef90	UniRef90_UPI001896BBDB	MerR family transcriptional regulator	NA
UHGV-0085916_74	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0085916_74	COG	COG0789	DNA-binding transcriptional regulator, MerR family	NA
UHGV-0085916_74	Structural annotation	PF12728, MF_01155, NF033787, COG3311	NA	NA