UHGV-0085971

Genome information

Genome length 31,209 bps

CDS count 47

Completeness 100.00% (complete)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0085971
vOTU ID	vOTU-045241
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_187171
BioSample	SAMEA3449183
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.13
Jumbo phage	No

Genome content
Genome length	31,209 bps
GC content	57.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	93.26%
Average CDS length	624.45 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0085971_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0085971_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0085971_1	UniRef90	UniRef90_UPI00164E9A6A	recombinase family protein	NA
UHGV-0085971_1	eggNOG-mapper	665956.HMPREF1032_01888	NA	NA
UHGV-0085971_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0085971_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0085971_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0085971_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0085971_1	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0085971_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0085971_2	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0085971_3	UniRef90	UniRef90_UPI001C1EEC82	HIRAN domain-containing protein	NA
UHGV-0085971_3	eggNOG-mapper	391295.SSU05_0840	HIRAN domain	NA
UHGV-0085971_3	Pfam	PF08797	HIRAN domain	HIRAN
UHGV-0085971_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0085971_4	UniRef90	UniRef90_A0A1C6GB05	Helix-turn-helix	NA
UHGV-0085971_4	eggNOG-mapper	1297617.JPJD01000059_gene2644	addiction module antidote protein HigA	NA
UHGV-0085971_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0085971_4	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0085971_4	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-0085971_9	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0085971_9	UniRef90	UniRef90_A0A316MAS4	Helix-turn-helix domain-containing protein	NA
UHGV-0085971_9	eggNOG-mapper	458233.MCCL_1540	Helix-turn-helix domain	NA
UHGV-0085971_9	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0085971_9	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0085971_9	Structural annotation	PF02002, MF_01909, NF040939, COG5529	NA	NA
UHGV-0085971_10	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0085971_10	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0085971_10	UniRef90	UniRef90_R5ENX5	DNA helicase	NA
UHGV-0085971_10	eggNOG-mapper	693746.OBV_27440	DnaB-like helicase N terminal domain	NA
UHGV-0085971_10	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0085971_10	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0085971_10	COG	COG0305	Replicative DNA helicase	NA
UHGV-0085971_10	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0085971_11	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0085971_11	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0085971_11	UniRef90	UniRef90_R5EEH2	CobQ/CobB/MinD/ParA nucleotide binding domain protein	NA
UHGV-0085971_11	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0085971_11	Pfam	PF13614	AAA domain	AAA_31
UHGV-0085971_11	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0085971_11	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0085971_12	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0085971_12	PHROG	phrog_27290	NA	unknown function
UHGV-0085971_12	UniRef90	UniRef90_R5EBB0	ParB domain-containing protein	NA
UHGV-0085971_12	eggNOG-mapper	1007096.BAGW01000033_gene1613	ParB-like nuclease domain	NA
UHGV-0085971_12	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0085971_12	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0085971_12	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0085971_14	PHROG	phrog_21498	NA	unknown function
UHGV-0085971_14	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0085971_14	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0085971_14	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0085971_20	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0085971_20	eggNOG-mapper	632245.CLP_2642	NA	NA
UHGV-0085971_20	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0085971_21	PHROG	phrog_6417	translational regulator	other
UHGV-0085971_21	UniRef90	UniRef90_UPI001F309B22	cysteine-rich KTR domain-containing protein	NA
UHGV-0085971_21	Structural annotation	PF14205, COG4416	NA	NA
UHGV-0085971_22	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0085971_22	UniRef90	UniRef90_A0A316P1K8	HNH endonuclease	NA
UHGV-0085971_22	eggNOG-mapper	755731.Clo1100_0542	HNH nucleases	NA
UHGV-0085971_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0085971_22	Structural annotation	TIGR02646	NA	NA
UHGV-0085971_23	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0085971_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0085971_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0085971_24	UniRef90	UniRef90_R5EM34	Phage terminase large subunit	NA
UHGV-0085971_24	eggNOG-mapper	365048.Q0H264_9CAUD	Phage Terminase	NA
UHGV-0085971_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0085971_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0085971_24	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0085971_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0085971_25	UniRef90	UniRef90_C0Z707	Putative portal protein	NA
UHGV-0085971_25	eggNOG-mapper	358681.BBR47_29150	Phage portal protein	NA
UHGV-0085971_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0085971_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0085971_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0085971_25	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0085971_26	KOfam	K06904	NA	NA
UHGV-0085971_26	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0085971_26	UniRef90	UniRef90_A0A0L6JGJ8	Phage prohead protease, HK97 family	NA
UHGV-0085971_26	eggNOG-mapper	398512.JQKC01000009_gene450	Phage prohead protease, HK97 family	NA
UHGV-0085971_26	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0085971_26	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0085971_26	COG	COG3740	Phage head maturation protease	NA
UHGV-0085971_26	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0085971_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-0085971_27	UniRef90	UniRef90_A0A2V2FJ37	Phage major capsid protein	NA
UHGV-0085971_27	eggNOG-mapper	642492.Clole_0744	phage major capsid protein, HK97 family	NA
UHGV-0085971_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0085971_27	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0085971_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0085971_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0085971_27	Structural annotation	PF05065, PF18316, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0085971_28	PHROG	phrog_88	major tail protein	tail
UHGV-0085971_28	UniRef90	UniRef90_R5EB96	Phage major tail protein phi13 family	NA
UHGV-0085971_28	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0085971_30	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0085971_31	Structural annotation	PF11367, MF_00632	NA	NA
UHGV-0085971_32	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0085971_32	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0085971_34	PHROG	phrog_5493	tail length tape measure protein	tail
UHGV-0085971_34	eggNOG-mapper	397290.C810_00429	Phage-related minor tail protein	NA
UHGV-0085971_34	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0085971_34	Structural annotation	PF20155	NA	NA
UHGV-0085971_35	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0085971_36	Structural annotation	PF14594, TIGR01646, COG4926	NA	NA
UHGV-0085971_37	PHROG	phrog_2295	NA	unknown function
UHGV-0085971_37	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0085971_41	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0085971_41	PHROG	phrog_1493	endolysin	lysis
UHGV-0085971_41	UniRef90	UniRef90_R5EEQ7	Putative muramoyl-pentapeptide carboxypeptidase	NA
UHGV-0085971_41	eggNOG-mapper	903814.ELI_0090	Peptidoglycan-binding domain 1 protein	NA
UHGV-0085971_41	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0085971_41	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0085971_41	COG	COG3108	NA	NA
UHGV-0085971_41	Structural annotation	PF05951, PF01471, TIGR02869, COG3108	NA	NA
UHGV-0085971_42	PHROG	phrog_4105	NA	unknown function
UHGV-0085971_42	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0085971_42	eggNOG-mapper	742733.HMPREF9469_05011	NA	NA
UHGV-0085971_43	PHROG	phrog_608	holin	lysis
UHGV-0085971_43	UniRef90	UniRef90_UPI00046E80CD	phage holin, LLH family	NA
UHGV-0085971_43	eggNOG-mapper	1336234.JAGN01000004_gene510	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0085971_43	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0085971_43	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0085971_44	Structural annotation	PF01047, MF_00620, COG2771	NA	NA