UHGV-0086015

Genome information

Genome length 25,336 bps

CDS count 40

Completeness 62.45% (medium-quality)

geNomad score 0.9723

Prediction confidence Confident

Genome information
Genome ID	UHGV-0086015
vOTU ID	vOTU-041336
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_168621
BioSample	SAMEA3136736
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.45% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9723
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.62
Jumbo phage	No

Genome content
Genome length	25,336 bps
GC content	44.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	92.29%
Average CDS length	588.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0086015_2	PHROG	phrog_3099	NA	unknown function
UHGV-0086015_2	eggNOG-mapper	428127.EUBDOL_01218	NA	NA
UHGV-0086015_2	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0086015_3	PHROG	phrog_3266	tail completion	connector
UHGV-0086015_3	UniRef90	UniRef90_A0A355UZ60	Chloramphenicol resistance protein	NA
UHGV-0086015_3	eggNOG-mapper	428127.EUBDOL_01219	NA	NA
UHGV-0086015_3	Structural annotation	PF12691	NA	NA
UHGV-0086015_4	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0086015_4	UniRef90	UniRef90_UPI0011781EF8	minor capsid protein	NA
UHGV-0086015_4	eggNOG-mapper	428127.EUBDOL_01220	NA	NA
UHGV-0086015_4	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0086015_5	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0086015_5	UniRef90	UniRef90_UPI0011061BF4	minor capsid protein	NA
UHGV-0086015_5	eggNOG-mapper	428127.EUBDOL_01220	NA	NA
UHGV-0086015_6	Pfam	PF20536	NA	DUF6751
UHGV-0086015_6	Structural annotation	PF20536, COG1853	NA	NA
UHGV-0086015_7	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0086015_7	eggNOG-mapper	536233.CLO_0887	NA	NA
UHGV-0086015_8	PHROG	phrog_283	major head protein	head and packaging
UHGV-0086015_8	UniRef90	UniRef90_UPI001896DBE2	P22 coat protein	NA
UHGV-0086015_8	eggNOG-mapper	428127.EUBDOL_01223	P22 coat protein - gene protein 5	NA
UHGV-0086015_8	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0086015_8	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0086015_9	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0086015_9	UniRef90	UniRef90_UPI000693D290	phage scaffolding protein	NA
UHGV-0086015_9	eggNOG-mapper	1232449.BAHV02000008_gene631	NA	NA
UHGV-0086015_9	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0086015_9	Structural annotation	PF06810	NA	NA
UHGV-0086015_10	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0086015_10	UniRef90	UniRef90_UPI00156F0E9C	NA	NA
UHGV-0086015_10	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0086015_10	Structural annotation	PF14359	NA	NA
UHGV-0086015_11	PHROG	phrog_3675	NA	unknown function
UHGV-0086015_11	UniRef90	UniRef90_A0A3N0I0X7	Dihydrolipoyl dehydrogenase	NA
UHGV-0086015_11	eggNOG-mapper	1235799.C818_04221	YjcQ protein	NA
UHGV-0086015_11	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0086015_11	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0086015_12	Structural annotation	PF11344	NA	NA
UHGV-0086015_13	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0086015_13	UniRef90	UniRef90_UPI001CD92893	phage minor capsid protein	NA
UHGV-0086015_13	eggNOG-mapper	428127.EUBDOL_01227	Phage minor capsid protein 2	NA
UHGV-0086015_13	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0086015_13	COG	COG2369	NA	NA
UHGV-0086015_13	Structural annotation	PF06152	NA	NA
UHGV-0086015_14	PHROG	phrog_533	portal protein	head and packaging
UHGV-0086015_14	UniRef90	UniRef90_A8RC00	Phage minor capsid protein	NA
UHGV-0086015_14	eggNOG-mapper	428127.EUBDOL_01228	phage minor capsid protein	NA
UHGV-0086015_14	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0086015_14	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0086015_15	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0086015_15	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0086015_15	UniRef90	UniRef90_A8RC01	Phage terminase, large subunit, PBSX family	NA
UHGV-0086015_15	eggNOG-mapper	428127.EUBDOL_01229	Phage terminase, large subunit, PBSX family	NA
UHGV-0086015_15	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0086015_15	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0086015_15	COG	COG1783	Phage terminase large subunit	NA
UHGV-0086015_15	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0086015_16	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0086015_16	UniRef90	UniRef90_R5J299	Phage terminase small subunit	NA
UHGV-0086015_16	eggNOG-mapper	552396.HMPREF0863_04210	DNA packaging	NA
UHGV-0086015_16	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0086015_16	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0086015_16	COG	COG5484	NA	NA
UHGV-0086015_16	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0086015_17	PHROG	phrog_1758	acetyltransferase	other
UHGV-0086015_17	UniRef90	UniRef90_A0A3D0HNX7	N-acetyltransferase	NA
UHGV-0086015_17	eggNOG-mapper	642492.Clole_1882	acetyltransferase	NA
UHGV-0086015_17	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0086015_17	Structural annotation	PF13673, MF_02210, NF000360, COG2153	NA	NA
UHGV-0086015_19	eggNOG-mapper	658659.HMPREF0983_03303	NA	NA
UHGV-0086015_19	Structural annotation	PF05263, MF_00245, TIGR01636	NA	NA
UHGV-0086015_23	eggNOG-mapper	1120978.KB894087_gene426	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0086015_23	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0086015_25	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0086015_25	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0086015_25	UniRef90	UniRef90_UPI001D08BFE8	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0086015_25	eggNOG-mapper	411462.DORLON_00806	Endodeoxyribonuclease RusA	NA
UHGV-0086015_25	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0086015_25	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0086015_25	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0086015_26	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0086015_26	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0086015_26	UniRef90	UniRef90_N9WWG5	PriCT_2 domain-containing protein	NA
UHGV-0086015_26	eggNOG-mapper	999413.HMPREF1094_00232	Primase C terminal 2 (PriCT-2)	NA
UHGV-0086015_26	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0086015_26	Pfam	PF13481	AAA domain	AAA_25
UHGV-0086015_26	COG	COG3598	RecA-family ATPase	NA
UHGV-0086015_26	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0086015_27	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0086015_27	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0086015_27	UniRef90	UniRef90_A0A1Y4LTU1	DEAD/DEAH box helicase	NA
UHGV-0086015_27	eggNOG-mapper	552396.HMPREF0863_02436	helicase superfamily c-terminal domain	NA
UHGV-0086015_27	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0086015_27	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0086015_27	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0086015_27	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0086015_27	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0086015_28	PHROG	phrog_2698	NA	unknown function
UHGV-0086015_28	UniRef90	UniRef90_A0A1Y4QVI7	NA	NA
UHGV-0086015_28	eggNOG-mapper	1123511.KB905868_gene200	NA	NA
UHGV-0086015_28	Structural annotation	PF05037	NA	NA
UHGV-0086015_29	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0086015_29	UniRef90	UniRef90_UPI0009337475	ATP-binding protein	NA
UHGV-0086015_29	eggNOG-mapper	999413.HMPREF1094_00235	AAA domain	NA
UHGV-0086015_29	Pfam	PF13479	AAA domain	AAA_24
UHGV-0086015_29	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0086015_30	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0086015_30	PHROG	phrog_1499	NA	unknown function
UHGV-0086015_30	UniRef90	UniRef90_R9MU49	AAA_15 domain-containing protein	NA
UHGV-0086015_30	eggNOG-mapper	1235798.C817_04766	AAA ATPase domain	NA
UHGV-0086015_30	Pfam	PF13476	AAA domain	AAA_23
UHGV-0086015_30	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0086015_30	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0086015_31	PHROG	phrog_6631	NA	unknown function
UHGV-0086015_31	UniRef90	UniRef90_A0A417JW62	3D domain-containing protein	NA
UHGV-0086015_31	eggNOG-mapper	658088.HMPREF0987_02675	peptidase	NA
UHGV-0086015_31	Pfam	PF06725	3D domain	3D
UHGV-0086015_31	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0086015_31	Structural annotation	PF06725, COG3584	NA	NA
UHGV-0086015_35	UniRef90	UniRef90_UPI001C7136B9	NA	NA
UHGV-0086015_35	Pfam	PF13031	NA	DUF3892
UHGV-0086015_35	Structural annotation	PF13031	NA	NA
UHGV-0086015_37	UniRef90	UniRef90_UPI00189AB187	helix-turn-helix domain-containing protein	NA
UHGV-0086015_37	eggNOG-mapper	1131462.DCF50_p1826	Helix-turn-helix XRE-family like proteins	NA
UHGV-0086015_37	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0086015_37	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0086015_38	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0086015_38	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0086015_38	UniRef90	UniRef90_UPI00096A9788	helix-turn-helix domain-containing protein	NA
UHGV-0086015_38	eggNOG-mapper	999413.HMPREF1094_00245	Peptidase S24-like	NA
UHGV-0086015_38	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0086015_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0086015_38	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0086015_38	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0086015_38	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA
UHGV-0086015_39	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0086015_39	eggNOG-mapper	1226325.HMPREF1548_00608	NA	NA
UHGV-0086015_39	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0086015_39	Structural annotation	MF_01114, NF001062, COG2137	NA	NA
UHGV-0086015_40	KOfam	K14059	int; integrase	NA
UHGV-0086015_40	PHROG	phrog_1	integrase	integration and excision
UHGV-0086015_40	UniRef90	UniRef90_UPI00096A5EC5	tyrosine-type recombinase/integrase	NA
UHGV-0086015_40	eggNOG-mapper	908340.HMPREF9406_2610	Belongs to the 'phage' integrase family	NA
UHGV-0086015_40	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0086015_40	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0086015_40	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0086015_40	Structural annotation	PF00589, PF13102, MF_01807, TIGR02224, COG4973	NA	NA