UHGV-0086024

Genome information

vOTU vOTU-020597

Genome length 19,650 bps

CDS count 34

Completeness 52.60% (medium-quality)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-0086024
vOTU ID	vOTU-020597
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_187848
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.60% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.11
Jumbo phage	No

Genome content
Genome length	19,650 bps
GC content	40.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	90.40%
Average CDS length	526.41 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0086024_1	eggNOG-mapper	658655.HMPREF0988_02562	NA	NA
UHGV-0086024_2	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0086024_2	UniRef90	UniRef90_A0A174BAS8	Phage minor capsid protein 2	NA
UHGV-0086024_2	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-0086024_2	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0086024_2	COG	COG2369	NA	NA
UHGV-0086024_2	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0086024_3	PHROG	phrog_533	portal protein	head and packaging
UHGV-0086024_3	UniRef90	UniRef90_UPI001C8E2051	phage capsid protein	NA
UHGV-0086024_3	eggNOG-mapper	658655.HMPREF0988_02564	NA	NA
UHGV-0086024_3	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0086024_4	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0086024_4	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0086024_4	UniRef90	UniRef90_R6PMS4	Phage terminase large subunit PBSX family	NA
UHGV-0086024_4	eggNOG-mapper	411460.RUMTOR_02085	NA	NA
UHGV-0086024_4	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0086024_4	COG	COG1783	Phage terminase large subunit	NA
UHGV-0086024_4	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0086024_5	PHROG	phrog_2412	NA	unknown function
UHGV-0086024_5	UniRef90	UniRef90_UPI001E414EFE	KGG domain-containing protein	NA
UHGV-0086024_5	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-0086024_6	UniRef90	UniRef90_UPI001F215944	NA	NA
UHGV-0086024_6	eggNOG-mapper	693746.OBV_43160	NA	NA
UHGV-0086024_6	Pfam	PF10987	NA	DUF2806
UHGV-0086024_6	Structural annotation	PF10987, TIGR03899	NA	NA
UHGV-0086024_7	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0086024_7	UniRef90	UniRef90_R6WB78	Sigma70_r4 domain-containing protein	NA
UHGV-0086024_7	eggNOG-mapper	411462.DORLON_00800	NA	NA
UHGV-0086024_7	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0086024_7	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0086024_8	PHROG	phrog_7024	NA	unknown function
UHGV-0086024_8	eggNOG-mapper	1286171.EAL2_c05240	NA	NA
UHGV-0086024_8	AcrCatalog	cluster_1398	NA	NA
UHGV-0086024_10	PHROG	phrog_15198	NA	unknown function
UHGV-0086024_10	UniRef90	UniRef90_F7JKC2	NA	NA
UHGV-0086024_10	eggNOG-mapper	658655.HMPREF0988_00863	NA	NA
UHGV-0086024_10	Pfam	PF04448	NA	DUF551
UHGV-0086024_11	PHROG	phrog_419	NA	unknown function
UHGV-0086024_11	UniRef90	UniRef90_A0A4U9RIR3	NA	NA
UHGV-0086024_11	eggNOG-mapper	1123511.KB905860_gene2302	NA	NA
UHGV-0086024_13	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0086024_13	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0086024_13	UniRef90	UniRef90_R6WG22	DNA methylase family protein	NA
UHGV-0086024_13	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0086024_13	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0086024_13	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0086024_13	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0086024_13	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0086024_14	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0086024_14	UniRef90	UniRef90_R6WN60	NUMOD4 domain-containing protein	NA
UHGV-0086024_14	eggNOG-mapper	1410650.JHWL01000037_gene604	NA	NA
UHGV-0086024_14	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0086024_14	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0086024_15	PHROG	phrog_3253	NA	unknown function
UHGV-0086024_15	eggNOG-mapper	411461.DORFOR_00013	NA	NA
UHGV-0086024_16	PHROG	phrog_2289	helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0086024_16	UniRef90	UniRef90_R6XPV0	Inhibitor_G39P domain-containing protein	NA
UHGV-0086024_16	eggNOG-mapper	585394.RHOM_14005	Loader and inhibitor of phage G40P	NA
UHGV-0086024_16	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0086024_17	PHROG	phrog_15768	NA	unknown function
UHGV-0086024_17	eggNOG-mapper	886379.AEWI01000001_gene1766	NA	NA
UHGV-0086024_17	Structural annotation	PF09681, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0086024_18	PHROG	phrog_7566	NA	unknown function
UHGV-0086024_18	UniRef90	UniRef90_UPI000C7676A6	phosphoenolpyruvate carboxykinase	NA
UHGV-0086024_19	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0086024_19	eggNOG-mapper	411470.RUMGNA_02194	NA	NA
UHGV-0086024_19	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0086024_20	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0086024_20	UniRef90	UniRef90_UPI001F180A96	NA	NA
UHGV-0086024_20	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0086024_20	Pfam	PF06378	NA	DUF1071
UHGV-0086024_20	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0086024_21	UniRef90	UniRef90_UPI001F2FF670	CbrC family protein	NA
UHGV-0086024_26	PHROG	phrog_32168	NA	unknown function
UHGV-0086024_27	Structural annotation	PF09202, MF_01177, TIGR01889, COG5631	NA	NA
UHGV-0086024_29	Structural annotation	PF20385, NF040556	NA	NA
UHGV-0086024_30	UniRef90	UniRef90_UPI001D096ABA	helix-turn-helix transcriptional regulator	NA
UHGV-0086024_30	eggNOG-mapper	97139.C824_00059	NA	NA
UHGV-0086024_30	Structural annotation	PF13443, NF010465, COG3655	NA	NA
UHGV-0086024_31	UniRef90	UniRef90_A0A173UP67	Helix-turn-helix domain	NA
UHGV-0086024_31	eggNOG-mapper	1235798.C817_04757	NA	NA
UHGV-0086024_31	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0086024_31	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0086024_31	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0086024_32	PHROG	phrog_87	metallo-protease	other
UHGV-0086024_32	UniRef90	UniRef90_R6WB52	Peptidase_M78 domain-containing protein	NA
UHGV-0086024_32	eggNOG-mapper	553973.CLOHYLEM_07298	IrrE N-terminal-like domain	NA
UHGV-0086024_32	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0086024_32	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0086024_32	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0086024_33	eggNOG-mapper	1235792.C808_03101	NA	NA
UHGV-0086024_33	Structural annotation	PF16538	NA	NA
UHGV-0086024_34	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0086024_34	UniRef90	UniRef90_A0A496NQW6	Abi family protein (Fragment)	NA
UHGV-0086024_34	eggNOG-mapper	1235792.C808_03102	Abi-like protein	NA
UHGV-0086024_34	PADLOC	AbiD	AbiD	Abi
UHGV-0086024_34	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0086024_34	COG	COG4823	Abortive infection bacteriophage resistance protein	NA