UHGV-0086089

Genome information

Genome length 22,130 bps

CDS count 39

Completeness 52.11% (medium-quality)

geNomad score 0.9721

Prediction confidence Confident

Genome information
Genome ID	UHGV-0086089
vOTU ID	vOTU-022275
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_182413
BioSample	SAMEA3449296
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.11% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9721
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.97
Jumbo phage	No

Genome content
Genome length	22,130 bps
GC content	47.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	89.56%
Average CDS length	512.54 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0086089_1	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0086089_1	UniRef90	UniRef90_G0EMV5	Abortive infection bacteriophage resistance protein	NA
UHGV-0086089_1	eggNOG-mapper	1045858.Bint_2390	Abi-like protein	NA
UHGV-0086089_1	PADLOC	AbiD	AbiD	Abi
UHGV-0086089_1	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0086089_1	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0086089_1	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0086089_2	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0086089_2	UniRef90	UniRef90_A0A6S6XCB9	Abi family protein	NA
UHGV-0086089_2	eggNOG-mapper	888746.HMPREF9180_0753	Abi-like protein	NA
UHGV-0086089_2	PADLOC	AbiD	AbiD	Abi
UHGV-0086089_2	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0086089_2	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0086089_2	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0086089_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0086089_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0086089_3	UniRef90	UniRef90_A0A8J6J9S0	Helix-turn-helix domain-containing protein	NA
UHGV-0086089_3	eggNOG-mapper	1121423.JONT01000002_gene2372	Peptidase S24-like	NA
UHGV-0086089_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0086089_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0086089_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0086089_3	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0086089_4	UniRef90	UniRef90_A0A3D1SE14	Toxin-antitoxin system, antitoxin component, Xre family protein	NA
UHGV-0086089_4	eggNOG-mapper	290402.Cbei_1616	domain protein	NA
UHGV-0086089_4	Pfam	PF05339	NA	DUF739
UHGV-0086089_4	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0086089_6	PHROG	phrog_750	NA	unknown function
UHGV-0086089_6	eggNOG-mapper	742723.HMPREF9477_00931	NA	NA
UHGV-0086089_6	Structural annotation	PF13835, NF040858	NA	NA
UHGV-0086089_8	UniRef90	UniRef90_UPI00148AE9D1	helix-turn-helix transcriptional regulator	NA
UHGV-0086089_8	eggNOG-mapper	1232446.BAIE02000002_gene796	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0086089_8	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0086089_8	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0086089_12	Structural annotation	PF13639	NA	NA
UHGV-0086089_13	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0086089_13	UniRef90	UniRef90_A0A7I8D1X6	YqaJ domain-containing protein	NA
UHGV-0086089_13	eggNOG-mapper	428125.CLOLEP_01823	YqaJ viral recombinase family	NA
UHGV-0086089_13	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0086089_13	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0086089_13	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0086089_13	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0086089_14	eggNOG-mapper	195103.CPF_0939	RecT family	NA
UHGV-0086089_14	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0086089_15	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0086089_15	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0086089_15	UniRef90	UniRef90_UPI001899FCE8	recombinase RecT	NA
UHGV-0086089_15	eggNOG-mapper	330399.A8ATY6_9CAUD	DNA metabolic process	NA
UHGV-0086089_15	Pfam	PF03837	RecT family	RecT
UHGV-0086089_15	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0086089_16	UniRef90	UniRef90_A0A847W0Y2	HTH domain-containing protein	NA
UHGV-0086089_16	Structural annotation	PF21715, COG1654	NA	NA
UHGV-0086089_17	PHROG	phrog_2149	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0086089_17	eggNOG-mapper	1217713.F993_01546	NA	NA
UHGV-0086089_17	Structural annotation	PF01978, NF000243, COG0735	NA	NA
UHGV-0086089_18	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0086089_18	UniRef90	UniRef90_UPI001156D044	NA	NA
UHGV-0086089_18	eggNOG-mapper	445974.CLORAM_02947	NA	NA
UHGV-0086089_18	Pfam	PF06356	NA	DUF1064
UHGV-0086089_18	Structural annotation	PF06356, MF_04160, NF033179	NA	NA
UHGV-0086089_19	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0086089_19	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0086089_19	UniRef90	UniRef90_UPI00068AC68F	ParB/RepB/Spo0J family partition protein	NA
UHGV-0086089_19	eggNOG-mapper	1408437.JNJN01000030_gene1074	Belongs to the ParB family	NA
UHGV-0086089_19	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0086089_19	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0086089_19	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-0086089_19	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0086089_20	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0086089_20	UniRef90	UniRef90_UPI001C01CFF8	SANT/Myb domain-containing protein	NA
UHGV-0086089_20	eggNOG-mapper	445972.ANACOL_00160	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-0086089_20	Pfam	PF00249	Myb-like DNA-binding domain	Myb_DNA-binding
UHGV-0086089_20	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0086089_20	Structural annotation	PF11112, NF040595	NA	NA
UHGV-0086089_21	UniRef90	UniRef90_A0A127SQW0	YodL-like protein (Fragment)	NA
UHGV-0086089_21	eggNOG-mapper	33035.JPJF01000014_gene4825	YodL-like	NA
UHGV-0086089_21	Pfam	PF14191	YodL-like	YodL
UHGV-0086089_22	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0086089_22	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0086089_22	eggNOG-mapper	1567010.A0A0A7RU90_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-0086089_22	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0086089_23	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0086089_23	UniRef90	UniRef90_UPI00195B0EE7	methyltransferase domain-containing protein	NA
UHGV-0086089_23	eggNOG-mapper	411461.DORFOR_01143	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0086089_23	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0086089_23	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0086089_23	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0086089_23	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0086089_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0086089_28	UniRef90	UniRef90_A0A4Z0XVP8	RNA polymerase sigma factor SigO	NA
UHGV-0086089_28	eggNOG-mapper	748727.CLJU_c03460	sigma factor activity	NA
UHGV-0086089_28	Pfam	PF07374	NA	DUF1492
UHGV-0086089_28	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0086089_28	Structural annotation	PF07374, MF_00245, TIGR02980, COG2739	NA	NA
UHGV-0086089_29	PHROG	phrog_33130	NA	unknown function
UHGV-0086089_29	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0086089_29	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0086089_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0086089_30	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0086089_30	UniRef90	UniRef90_UPI001C8DFA18	terminase small subunit	NA
UHGV-0086089_30	eggNOG-mapper	1235800.C819_00494	Terminase small subunit	NA
UHGV-0086089_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0086089_30	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0086089_30	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0086089_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0086089_31	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0086089_31	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0086089_31	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0086089_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0086089_31	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0086089_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0086089_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0086089_31	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0086089_32	PHROG	phrog_533	portal protein	head and packaging
UHGV-0086089_32	UniRef90	UniRef90_UPI0006C81717	phage portal protein	NA
UHGV-0086089_32	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0086089_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0086089_32	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0086089_33	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0086089_33	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0086089_33	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0086089_33	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0086089_33	COG	COG2369	NA	NA
UHGV-0086089_33	Structural annotation	PF06152, PF15542, TIGR01641, COG2369	NA	NA
UHGV-0086089_36	PHROG	phrog_1233	NA	unknown function
UHGV-0086089_36	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0086089_36	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0086089_37	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0086089_37	UniRef90	UniRef90_UPI00189CE417	phage scaffolding protein	NA
UHGV-0086089_37	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-0086089_37	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0086089_37	Structural annotation	PF06810	NA	NA
UHGV-0086089_38	PHROG	phrog_212	major head protein	head and packaging
UHGV-0086089_38	UniRef90	UniRef90_A0A354MR33	Phage capsid protein	NA
UHGV-0086089_38	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-0086089_38	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA