UHGV-0086170

Genome information

Genome length 35,351 bps

CDS count 59

Completeness 84.95% (medium-quality)

geNomad score 0.9694

Prediction confidence Confident

Genome information
Genome ID	UHGV-0086170
vOTU ID	vOTU-029262
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_171296
BioSample	SAMEA3136637
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.95% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9694
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.11
Jumbo phage	No

Genome content
Genome length	35,351 bps
GC content	28.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	90.76%
Average CDS length	544.93 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0086170_2	KOfam	K14059	int; integrase	NA
UHGV-0086170_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0086170_2	UniRef90	UniRef90_UPI0018980724	site-specific integrase	NA
UHGV-0086170_2	eggNOG-mapper	272563.CD630_25190	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0086170_2	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0086170_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0086170_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0086170_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0086170_2	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0086170_3	PHROG	phrog_87	metallo-protease	other
UHGV-0086170_3	UniRef90	UniRef90_UPI0008D8DC60	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0086170_3	eggNOG-mapper	272563.CD630_13590	IrrE N-terminal-like domain	NA
UHGV-0086170_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0086170_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0086170_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0086170_4	UniRef90	UniRef90_UPI0015620210	PIN domain-containing protein	NA
UHGV-0086170_4	eggNOG-mapper	269797.Mbar_A2117	Large family of predicted nucleotide-binding domains	NA
UHGV-0086170_4	Pfam	PF01850	PIN domain	PIN
UHGV-0086170_4	Structural annotation	PF01850, MF_00265, NF010285, COG1848	NA	NA
UHGV-0086170_5	UniRef90	UniRef90_UPI0012AF0E9E	STAS-like domain-containing protein	NA
UHGV-0086170_5	eggNOG-mapper	1358423.N180_01760	NA	NA
UHGV-0086170_5	Pfam	PF14213	NA	DUF4325
UHGV-0086170_5	Structural annotation	PF14213	NA	NA
UHGV-0086170_6	PHROG	phrog_3364	NA	unknown function
UHGV-0086170_6	UniRef90	UniRef90_UPI0013D44121	ATP-binding protein	NA
UHGV-0086170_6	eggNOG-mapper	1122225.AULQ01000002_gene624	Histidine kinase	NA
UHGV-0086170_6	COG	COG0642	Signal transduction histidine kinase	NA
UHGV-0086170_6	Structural annotation	PF02518, PF01740, MF_00637, TIGR01925, TIGR00377, COG2172, COG1366	NA	NA
UHGV-0086170_7	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0086170_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0086170_7	UniRef90	UniRef90_UPI000AA24184	helix-turn-helix domain-containing protein	NA
UHGV-0086170_7	eggNOG-mapper	1511.CLOST_1561	Helix-turn-helix XRE-family like proteins	NA
UHGV-0086170_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0086170_7	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0086170_8	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0086170_8	UniRef90	UniRef90_A0A6B4CNP3	Helix-turn-helix domain-containing protein	NA
UHGV-0086170_8	eggNOG-mapper	536232.CLM_3447	TRANSCRIPTIONal	NA
UHGV-0086170_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0086170_8	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0086170_8	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0086170_9	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0086170_9	UniRef90	UniRef90_UPI0009F3207E	ORF6N domain-containing protein	NA
UHGV-0086170_9	eggNOG-mapper	190478.Q8SBM8_9CAUD	DNA binding	NA
UHGV-0086170_9	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0086170_9	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0086170_11	UniRef90	UniRef90_UPI0008DA0801	helix-turn-helix domain-containing protein	NA
UHGV-0086170_11	eggNOG-mapper	397290.C810_03774	Helix-turn-helix domain	NA
UHGV-0086170_11	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0086170_11	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0086170_14	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0086170_14	UniRef90	UniRef90_UPI0018AA9BE6	siphovirus Gp157 family protein	NA
UHGV-0086170_14	eggNOG-mapper	262071.A3QSF2_9CAUD	Siphovirus Gp157	NA
UHGV-0086170_14	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0086170_14	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0086170_16	PHROG	phrog_10056	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0086170_16	UniRef90	UniRef90_UPI0008D93F23	phage recombination protein Bet	NA
UHGV-0086170_16	eggNOG-mapper	272563.CD630_09170	Phage recombination protein Bet	NA
UHGV-0086170_16	Pfam	PF03837	RecT family	RecT
UHGV-0086170_16	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0086170_16	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0086170_16	Structural annotation	PF03837, PF16784, TIGR01913, COG3723	NA	NA
UHGV-0086170_17	PHROG	phrog_6251	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UHGV-0086170_17	UniRef90	UniRef90_A0A1G9MM17	DnaD and phage-associated domain-containing protein	NA
UHGV-0086170_17	eggNOG-mapper	634956.Geoth_0760	dnaD_dom DnaD domain protein	NA
UHGV-0086170_17	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0086170_17	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0086170_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0086170_18	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0086170_18	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0086170_18	UniRef90	UniRef90_UPI0018A97110	ATP-binding protein	NA
UHGV-0086170_18	eggNOG-mapper	1292035.H476_1309	Bacterial dnaA protein	NA
UHGV-0086170_18	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0086170_18	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0086170_18	Structural annotation	PF01695, MF_01919, NF005378, COG1484	NA	NA
UHGV-0086170_19	PHROG	phrog_1310	NA	unknown function
UHGV-0086170_19	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0086170_21	PHROG	phrog_173	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UHGV-0086170_21	UniRef90	UniRef90_UPI0008DA482F	dUTP diphosphatase	NA
UHGV-0086170_21	eggNOG-mapper	198467.NP92_02735	dUTPase	NA
UHGV-0086170_21	Pfam	PF08761	dUTPase	dUTPase_2
UHGV-0086170_21	COG	COG4508	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	NA
UHGV-0086170_21	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0086170_22	UniRef90	UniRef90_UPI0009F68CA6	Spo0E family sporulation regulatory protein-aspartic acid phosphatase	NA
UHGV-0086170_22	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0086170_27	PHROG	phrog_21487	NA	unknown function
UHGV-0086170_28	PHROG	phrog_98	NA	unknown function
UHGV-0086170_28	UniRef90	UniRef90_UPI000E34A494	YopX family protein	NA
UHGV-0086170_28	eggNOG-mapper	1220589.CD32_01175	YopX protein	NA
UHGV-0086170_28	Pfam	PF09643	YopX protein	YopX
UHGV-0086170_28	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0086170_28	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0086170_29	eggNOG-mapper	1280689.AUJC01000011_gene1503	NA	NA
UHGV-0086170_33	PHROG	phrog_2462	NA	unknown function
UHGV-0086170_33	UniRef90	UniRef90_A0A0A8WJQ5	Putative phage protein	NA
UHGV-0086170_33	eggNOG-mapper	1204534.J9QEC7_9CAUD	NA	NA
UHGV-0086170_34	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0086170_34	UniRef90	UniRef90_UPI000934E5E6	NA	NA
UHGV-0086170_34	eggNOG-mapper	999411.HMPREF1092_00897	NA	NA
UHGV-0086170_34	Pfam	PF14359	NA	DUF4406
UHGV-0086170_34	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0086170_38	UniRef90	UniRef90_F9ER77	PKD domain containing protein	NA
UHGV-0086170_38	eggNOG-mapper	1035196.HMPREF9998_01449	NA	NA
UHGV-0086170_38	Pfam	PF07866	NA	DUF1653
UHGV-0086170_38	COG	COG4728	NA	NA
UHGV-0086170_38	Structural annotation	PF07866, NF038082, COG4728	NA	NA
UHGV-0086170_39	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0086170_39	UniRef90	UniRef90_T4VGB1	Putative sigma factor	NA
UHGV-0086170_39	eggNOG-mapper	1292035.H476_1023	sigma factor activity	NA
UHGV-0086170_39	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0086170_39	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0086170_41	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0086170_41	PHROG	phrog_216	integrase	integration and excision
UHGV-0086170_41	UniRef90	UniRef90_UPI000A26B7D3	tyrosine-type recombinase/integrase	NA
UHGV-0086170_41	eggNOG-mapper	1423321.AS29_22215	Integrase	NA
UHGV-0086170_41	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0086170_41	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0086170_41	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0086170_42	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0086170_42	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0086170_42	UniRef90	UniRef90_UPI000B81C43B	HNH endonuclease	NA
UHGV-0086170_42	eggNOG-mapper	945021.TEH_18150	HNH endonuclease	NA
UHGV-0086170_42	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0086170_42	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0086170_42	Structural annotation	PF05766	NA	NA
UHGV-0086170_43	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0086170_43	UniRef90	UniRef90_UPI001E32633A	phage terminase small subunit P27 family	NA
UHGV-0086170_43	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0086170_43	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0086170_43	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0086170_43	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0086170_44	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0086170_44	UniRef90	UniRef90_UPI001E28FACF	terminase large subunit	NA
UHGV-0086170_44	eggNOG-mapper	1234664.AMRO01000024_gene1804	Phage Terminase	NA
UHGV-0086170_44	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0086170_44	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0086170_44	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0086170_44	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0086170_45	PHROG	phrog_1142	NA	unknown function
UHGV-0086170_46	PHROG	phrog_12	portal protein	head and packaging
UHGV-0086170_46	UniRef90	UniRef90_W8TJJ6	Portal protein 3	NA
UHGV-0086170_46	eggNOG-mapper	1286171.EAL2_c11040	Phage portal protein	NA
UHGV-0086170_46	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0086170_46	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0086170_46	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0086170_46	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0086170_47	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0086170_47	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0086170_47	UniRef90	UniRef90_A0A8B4D990	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0086170_47	eggNOG-mapper	1286171.EAL2_c11050	Belongs to the peptidase S14 family	NA
UHGV-0086170_47	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0086170_47	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0086170_47	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0086170_48	PHROG	phrog_10	major head protein	head and packaging
UHGV-0086170_48	UniRef90	UniRef90_UPI000C087E3A	phage major capsid protein	NA
UHGV-0086170_48	eggNOG-mapper	1235792.C808_03063	phage major capsid protein, HK97 family	NA
UHGV-0086170_48	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0086170_48	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0086170_48	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0086170_48	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0086170_49	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0086170_49	UniRef90	UniRef90_A0A8B5KP81	Phage gp6-like head-tail connector protein	NA
UHGV-0086170_49	eggNOG-mapper	1291050.JAGE01000001_gene2923	Phage gp6-like head-tail connector protein	NA
UHGV-0086170_49	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0086170_49	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0086170_49	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0086170_50	PHROG	phrog_25	head closure Hc1	connector
UHGV-0086170_50	UniRef90	UniRef90_UPI00142F7AAD	phage head closure protein	NA
UHGV-0086170_50	eggNOG-mapper	1033737.CAEV01000029_gene291	head-tail adaptor	NA
UHGV-0086170_50	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0086170_50	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0086170_50	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0086170_50	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0086170_51	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0086170_51	UniRef90	UniRef90_UPI0018AB7791	HK97 gp10 family phage protein	NA
UHGV-0086170_51	eggNOG-mapper	1476973.JMMB01000007_gene1766	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0086170_51	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0086170_51	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0086170_51	Structural annotation	TIGR01725	NA	NA
UHGV-0086170_52	PHROG	phrog_78	tail terminator	connector
UHGV-0086170_52	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0086170_53	PHROG	phrog_88	major tail protein	tail
UHGV-0086170_53	UniRef90	UniRef90_B1V2P3	Phage major tail protein, Phi13 family	NA
UHGV-0086170_53	eggNOG-mapper	1151292.QEW_0347	Phage tail tube protein	NA
UHGV-0086170_53	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0086170_53	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0086170_54	eggNOG-mapper	1476973.JMMB01000007_gene1770	NA	NA
UHGV-0086170_55	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-0086170_55	eggNOG-mapper	573061.Clocel_3533	tail tape measure protein	NA
UHGV-0086170_55	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0086170_55	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0086170_56	UniRef90	UniRef90_A0A174PPV5	Phage-related protein	NA
UHGV-0086170_56	eggNOG-mapper	1151292.QEW_4524	tail component	NA
UHGV-0086170_56	COG	COG4722	Phage-related protein YomH	NA
UHGV-0086170_56	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0086170_57	PHROG	phrog_13289	tail protein	tail
UHGV-0086170_57	UniRef90	UniRef90_A0A1C5YGX2	Phage-related protein	NA
UHGV-0086170_57	eggNOG-mapper	1151292.QEW_4523	Phage minor structural protein	NA
UHGV-0086170_57	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0086170_57	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0086170_57	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0086170_57	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0086170_58	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-0086170_58	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0086170_58	eggNOG-mapper	620914.JH621277_gene244	Bacterial Ig-like domain 2	NA
UHGV-0086170_58	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0086170_58	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-0086170_59	PHROG	phrog_13289	tail protein	tail
UHGV-0086170_59	eggNOG-mapper	445973.CLOBAR_00905	Calcineurin-like phosphoesterase	NA
UHGV-0086170_59	COG	COG1409	3',5'-cyclic AMP phosphodiesterase CpdA	NA