UHGV-0086201

Genome information

Genome length 30,642 bps

CDS count 47

Completeness 91.70% (high-quality)

geNomad score 0.9453

Prediction confidence Confident

Genome information
Genome ID	UHGV-0086201
vOTU ID	vOTU-068177
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_176579
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.70% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9453
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.93
Jumbo phage	No

Genome content
Genome length	30,642 bps
GC content	36.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	93.29%
Average CDS length	610.85 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0086201_1	PHROG	phrog_10934	NA	unknown function
UHGV-0086201_1	eggNOG-mapper	1231377.C426_0907	NA	NA
UHGV-0086201_2	eggNOG-mapper	1297617.JPJD01000029_gene2388	DNA/RNA non-specific endonuclease	NA
UHGV-0086201_2	COG	COG2169	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	NA
UHGV-0086201_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0086201_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0086201_3	UniRef90	UniRef90_R7MLD2	HTH cro/C1-type domain-containing protein	NA
UHGV-0086201_3	eggNOG-mapper	1160721.RBI_II00559	Peptidase S24-like	NA
UHGV-0086201_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0086201_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0086201_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0086201_3	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, NF041951, COG1396, COG1974	NA	NA
UHGV-0086201_6	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0086201_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0086201_6	UniRef90	UniRef90_UPI000568D140	helix-turn-helix transcriptional regulator	NA
UHGV-0086201_6	eggNOG-mapper	1288083.AUKR01000017_gene2567	Helix-turn-helix XRE-family like proteins	NA
UHGV-0086201_6	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0086201_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0086201_6	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0086201_6	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0086201_8	AcrCatalog	cluster_158759	NA	NA
UHGV-0086201_9	KOfam	K07497	K07497; putative transposase	NA
UHGV-0086201_9	PHROG	phrog_310	transposase	integration and excision
UHGV-0086201_9	UniRef90	UniRef90_A0A1C6DYI1	Integrase core domain	NA
UHGV-0086201_9	eggNOG-mapper	411473.RUMCAL_01908	Mu transposase, C-terminal	NA
UHGV-0086201_9	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-0086201_9	Pfam	PF09039	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
UHGV-0086201_9	Pfam	PF02914	Bacteriophage Mu transposase	DDE_2
UHGV-0086201_9	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-0086201_9	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0086201_9	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-0086201_10	KOfam	K07132	MuB; ATP-dependent target DNA activator	NA
UHGV-0086201_10	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0086201_10	UniRef90	UniRef90_A0A1C6DZD6	Putative secretion ATPase, PEP-CTERM locus subfamily	NA
UHGV-0086201_10	eggNOG-mapper	411473.RUMCAL_01909	AAA domain	NA
UHGV-0086201_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0086201_10	Pfam	PF13401	AAA domain	AAA_22
UHGV-0086201_10	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0086201_10	Structural annotation	PF13401, MF_01407, TIGR03015, COG2842	NA	NA
UHGV-0086201_12	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0086201_12	UniRef90	UniRef90_A0A1C6DZ10	Transcriptional regulator, AbrB family	NA
UHGV-0086201_12	eggNOG-mapper	1160721.RBI_II00552	SpoVT / AbrB like domain	NA
UHGV-0086201_12	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0086201_12	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0086201_12	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0086201_12	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0086201_13	eggNOG-mapper	1160721.RBI_II00551	NA	NA
UHGV-0086201_13	AcrCatalog	cluster_71843	NA	NA
UHGV-0086201_14	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0086201_14	eggNOG-mapper	411473.RUMCAL_01913	HNH endonuclease	NA
UHGV-0086201_14	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0086201_15	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0086201_15	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0086201_15	UniRef90	UniRef90_U2KRN6	IstB_IS21 domain-containing protein	NA
UHGV-0086201_15	eggNOG-mapper	411473.RUMCAL_01914	NA	NA
UHGV-0086201_15	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0086201_15	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0086201_15	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0086201_16	PHROG	phrog_286	NA	unknown function
UHGV-0086201_16	UniRef90	UniRef90_UPI000F52EBD0	NA	NA
UHGV-0086201_16	eggNOG-mapper	411473.RUMCAL_01915	NA	NA
UHGV-0086201_16	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-0086201_16	Structural annotation	PF06252	NA	NA
UHGV-0086201_17	PHROG	phrog_836	late transcriptional activator	transcription regulation
UHGV-0086201_17	UniRef90	UniRef90_A0A2T3FAL3	DNA-binding protein	NA
UHGV-0086201_17	eggNOG-mapper	411902.CLOBOL_06317	Mor transcription activator family	NA
UHGV-0086201_17	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-0086201_17	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0086201_17	Structural annotation	PF08765, NF040785, COG5566	NA	NA
UHGV-0086201_18	PHROG	phrog_462	lipoprotein	other
UHGV-0086201_18	eggNOG-mapper	411473.RUMCAL_01917	NA	NA
UHGV-0086201_19	PHROG	phrog_25462	NA	unknown function
UHGV-0086201_19	UniRef90	UniRef90_A0A3C0QMV8	Type VI secretion protein	NA
UHGV-0086201_19	eggNOG-mapper	411473.RUMCAL_01918	NA	NA
UHGV-0086201_19	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-0086201_20	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-0086201_20	UniRef90	UniRef90_UPI001D05DC57	NA	NA
UHGV-0086201_20	eggNOG-mapper	411473.RUMCAL_01919	NA	NA
UHGV-0086201_20	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0086201_20	Structural annotation	PF11985	NA	NA
UHGV-0086201_21	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-0086201_21	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-0086201_21	UniRef90	UniRef90_A0A3C2BAX0	NGN domain-containing protein	NA
UHGV-0086201_21	eggNOG-mapper	411473.RUMCAL_01920	Transcription termination factor nusG	NA
UHGV-0086201_21	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0086201_21	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-0086201_21	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-0086201_22	eggNOG-mapper	411473.RUMCAL_01921	NA	NA
UHGV-0086201_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0086201_23	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0086201_23	UniRef90	UniRef90_A0A3D4JQE0	PBSX family phage terminase large subunit	NA
UHGV-0086201_23	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-0086201_23	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0086201_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0086201_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0086201_23	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0086201_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-0086201_24	UniRef90	UniRef90_A0A349GP64	Portal protein	NA
UHGV-0086201_24	eggNOG-mapper	1295642.H839_08289	portal protein	NA
UHGV-0086201_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0086201_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0086201_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0086201_25	UniRef90	UniRef90_A0A174ZWV0	Phage minor capsid protein 2	NA
UHGV-0086201_25	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0086201_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0086201_25	COG	COG2369	NA	NA
UHGV-0086201_25	Structural annotation	PF06152	NA	NA
UHGV-0086201_27	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0086201_27	UniRef90	UniRef90_A0A150NS01	NA	NA
UHGV-0086201_27	eggNOG-mapper	764299.STRIC_2530	NA	NA
UHGV-0086201_28	PHROG	phrog_267	major head protein	head and packaging
UHGV-0086201_28	UniRef90	UniRef90_A0A1C6GMA6	S-l_SbsC_C domain-containing protein	NA
UHGV-0086201_28	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-0086201_28	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0086201_28	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0086201_29	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0086201_29	eggNOG-mapper	1134413.ANNK01000120_gene2024	NA	NA
UHGV-0086201_30	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0086201_30	UniRef90	UniRef90_UPI001DCE9966	minor capsid protein	NA
UHGV-0086201_30	eggNOG-mapper	1449343.JQLQ01000002_gene1330	Minor capsid protein	NA
UHGV-0086201_30	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0086201_30	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-0086201_30	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0086201_31	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0086201_31	UniRef90	UniRef90_A0A355V0F3	Minor capsid protein	NA
UHGV-0086201_31	eggNOG-mapper	1295642.H839_08329	Minor capsid protein	NA
UHGV-0086201_31	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0086201_31	Structural annotation	PF11114	NA	NA
UHGV-0086201_32	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0086201_32	Structural annotation	PF12691	NA	NA
UHGV-0086201_33	PHROG	phrog_820	major tail protein	tail
UHGV-0086201_33	UniRef90	UniRef90_A0A355UYH2	Capsid protein	NA
UHGV-0086201_33	eggNOG-mapper	1231057.AMGD01000018_gene3613	Belongs to the glycosyl hydrolase family 6	NA
UHGV-0086201_33	COG	COG5492	NA	NA
UHGV-0086201_33	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0086201_34	UniRef90	UniRef90_A0A143ZVS5	Cse1 domain-containing protein	NA
UHGV-0086201_34	Structural annotation	PF10666	NA	NA
UHGV-0086201_35	PHROG	phrog_706	NA	unknown function
UHGV-0086201_35	UniRef90	UniRef90_UPI001D428365	bacteriophage Gp15 family protein	NA
UHGV-0086201_35	eggNOG-mapper	428125.CLOLEP_01787	Bacteriophage Gp15 protein	NA
UHGV-0086201_35	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0086201_35	Structural annotation	PF06854	NA	NA
UHGV-0086201_36	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0086201_36	UniRef90	UniRef90_UPI001DC4D1A6	phage tail tape measure protein	NA
UHGV-0086201_36	eggNOG-mapper	428125.CLOLEP_01785	tail tape measure protein, TP901	NA
UHGV-0086201_36	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0086201_36	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0086201_36	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0086201_37	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0086201_37	UniRef90	UniRef90_A0A1M6EV13	Putative phage tail component, N-terminal domain-containing protein	NA
UHGV-0086201_37	eggNOG-mapper	536233.CLO_0897	tail component	NA
UHGV-0086201_37	COG	COG4722	Phage-related protein YomH	NA
UHGV-0086201_37	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0086201_39	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0086201_39	UniRef90	UniRef90_A0A352DNT6	Prophage_tailD1 domain-containing protein	NA
UHGV-0086201_39	eggNOG-mapper	272562.CA_C0063	Prophage endopeptidase tail	NA
UHGV-0086201_39	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0086201_39	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0086201_39	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0086201_39	COG	COG4926	Phage-related protein	NA
UHGV-0086201_44	PHROG	phrog_13256	NA	unknown function
UHGV-0086201_44	eggNOG-mapper	1160721.RBI_II00522	NA	NA
UHGV-0086201_45	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0086201_45	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0086201_45	UniRef90	UniRef90_A0A843GS03	M23 family metallopeptidase	NA
UHGV-0086201_45	eggNOG-mapper	696281.Desru_3788	Transglycosylase SLT domain	NA
UHGV-0086201_45	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0086201_45	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-0086201_45	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0086201_45	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0086201_45	Structural annotation	PF05951, PF01471, COG3108, COG3409	NA	NA
UHGV-0086201_46	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0086201_46	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0086201_46	UniRef90	UniRef90_A0A1C6CIL1	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0086201_46	eggNOG-mapper	1160721.RBI_II00519	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0086201_46	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-0086201_46	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0086201_46	COG	COG0338	DNA-adenine methylase	NA
UHGV-0086201_46	Structural annotation	PF02086, MF_00934, TIGR00571, COG0338	NA	NA
UHGV-0086201_47	UniRef90	UniRef90_R7MSP0	Conserved domain protein	NA
UHGV-0086201_47	eggNOG-mapper	189425.PGRAT_21375	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0086201_47	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26