UHGV-0086318

Genome information

Genome length 29,368 bps

CDS count 51

Completeness 67.09% (medium-quality)

geNomad score 0.9781

Prediction confidence Confident

Genome information
Genome ID	UHGV-0086318
vOTU ID	vOTU-025141
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_199765
BioSample	SAMEA3449244
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.09% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9781
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.24
Jumbo phage	No

Genome content
Genome length	29,368 bps
GC content	46.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	92.67%
Average CDS length	539.71 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0086318_2	KOfam	K14059	int; integrase	NA
UHGV-0086318_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0086318_2	UniRef90	UniRef90_A0A316PVZ6	Tyr recombinase domain-containing protein	NA
UHGV-0086318_2	eggNOG-mapper	445335.CBN_3017	Belongs to the 'phage' integrase family	NA
UHGV-0086318_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0086318_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0086318_2	Structural annotation	PF00589, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0086318_3	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0086318_3	PHROG	phrog_1412	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UHGV-0086318_3	UniRef90	UniRef90_UPI0002D17C33	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0086318_3	eggNOG-mapper	1235792.C808_05257	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0086318_3	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0086318_3	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0086318_3	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0086318_4	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0086318_4	Structural annotation	PF02805	NA	NA
UHGV-0086318_5	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0086318_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0086318_5	UniRef90	UniRef90_U2L7Z5	Putative repressor LexA	NA
UHGV-0086318_5	eggNOG-mapper	1321784.HMPREF1987_01096	Peptidase S24-like	NA
UHGV-0086318_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0086318_5	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0086318_5	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0086318_5	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0086318_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0086318_6	UniRef90	UniRef90_A0A6L9H3N2	XRE family transcriptional regulator	NA
UHGV-0086318_6	eggNOG-mapper	1321782.HMPREF1986_02244	Helix-turn-helix domain	NA
UHGV-0086318_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0086318_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0086318_6	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0086318_10	UniRef90	UniRef90_A0A1C5T7T8	DNA binding domain, excisionase family	NA
UHGV-0086318_10	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0086318_10	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0086318_10	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0086318_10	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0086318_13	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0086318_13	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0086318_13	UniRef90	UniRef90_A0A410PYU3	Recombinase RecT	NA
UHGV-0086318_13	eggNOG-mapper	1499683.CCFF01000017_gene2606	RecT family	NA
UHGV-0086318_13	Pfam	PF03837	RecT family	RecT
UHGV-0086318_13	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0086318_13	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0086318_14	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0086318_14	UniRef90	UniRef90_A0A410PWZ9	NA	NA
UHGV-0086318_14	eggNOG-mapper	431943.CKL_1894	NA	NA
UHGV-0086318_14	Pfam	PF12684	NA	DUF3799
UHGV-0086318_14	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0086318_14	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0086318_16	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0086318_16	eggNOG-mapper	411468.CLOSCI_00311	Transcriptional regulator	NA
UHGV-0086318_16	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0086318_19	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0086318_19	UniRef90	UniRef90_UPI0002F780B1	NA	NA
UHGV-0086318_19	eggNOG-mapper	342113.DM82_1124	NA	NA
UHGV-0086318_19	Pfam	PF06356	NA	DUF1064
UHGV-0086318_20	eggNOG-mapper	411459.RUMOBE_01111	NA	NA
UHGV-0086318_21	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0086318_21	UniRef90	UniRef90_A0A1C7GBP2	Methyltransferase	NA
UHGV-0086318_21	eggNOG-mapper	679201.HMPREF9334_00469	methyltransferase	NA
UHGV-0086318_21	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0086318_21	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0086318_21	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0086318_21	Structural annotation	PF05148, MF_00735, NF033398, COG1041	NA	NA
UHGV-0086318_22	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0086318_22	UniRef90	UniRef90_A0A843H0R6	NA	NA
UHGV-0086318_22	eggNOG-mapper	226185.EF_2118	NA	NA
UHGV-0086318_22	Pfam	PF12961	NA	DUF3850
UHGV-0086318_22	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-0086318_23	PHROG	phrog_7674	NA	unknown function
UHGV-0086318_23	eggNOG-mapper	768710.DesyoDRAFT_1081	NA	NA
UHGV-0086318_23	Structural annotation	PF06003	NA	NA
UHGV-0086318_28	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0086318_28	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0086318_28	UniRef90	UniRef90_UPI000C7C6540	HNH endonuclease	NA
UHGV-0086318_28	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0086318_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0086318_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0086318_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0086318_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0086318_31	UniRef90	UniRef90_A0A1C5T9Y0	Single-stranded DNA-binding protein	NA
UHGV-0086318_31	eggNOG-mapper	1120998.AUFC01000019_gene325	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0086318_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0086318_31	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0086318_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0086318_31	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0086318_31	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0086318_34	PHROG	phrog_25385	NA	unknown function
UHGV-0086318_34	eggNOG-mapper	748224.HMPREF9436_03077	NA	NA
UHGV-0086318_36	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0086318_36	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0086318_36	UniRef90	UniRef90_UPI001379A213	terminase small subunit	NA
UHGV-0086318_36	eggNOG-mapper	445971.ANASTE_00710	Terminase small subunit	NA
UHGV-0086318_36	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0086318_36	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0086318_36	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0086318_37	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0086318_37	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0086318_37	UniRef90	UniRef90_UPI001CF909A5	phage terminase large subunit	NA
UHGV-0086318_37	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0086318_37	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0086318_37	COG	COG1783	Phage terminase large subunit	NA
UHGV-0086318_37	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0086318_38	PHROG	phrog_156	portal protein	head and packaging
UHGV-0086318_38	eggNOG-mapper	748224.HMPREF9436_01396	NA	NA
UHGV-0086318_38	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0086318_39	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0086318_40	PHROG	phrog_13908	NA	unknown function
UHGV-0086318_40	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0086318_41	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0086318_41	UniRef90	UniRef90_UPI000B8B3F29	N4-gp56 family major capsid protein	NA
UHGV-0086318_41	eggNOG-mapper	1449126.JQKL01000003_gene1695	NA	NA
UHGV-0086318_41	Pfam	PF13252	NA	DUF4043
UHGV-0086318_41	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0086318_41	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0086318_42	PHROG	phrog_15239	NA	unknown function
UHGV-0086318_42	eggNOG-mapper	1449126.JQKL01000003_gene1694	NA	NA
UHGV-0086318_43	UniRef90	UniRef90_UPI001CF901D5	phage baseplate upper protein	NA
UHGV-0086318_43	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0086318_43	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-0086318_43	Structural annotation	PF20942, TIGR03503, COG2372	NA	NA
UHGV-0086318_45	PHROG	phrog_12105	NA	unknown function
UHGV-0086318_45	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-0086318_46	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0086318_46	UniRef90	UniRef90_A0A8D9UH72	Stabilization protein (Fragment)	NA
UHGV-0086318_46	eggNOG-mapper	1226322.HMPREF1545_00785	NA	NA
UHGV-0086318_46	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0086318_47	PHROG	phrog_25888	NA	unknown function
UHGV-0086318_48	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0086318_48	PHROG	phrog_819	tail protein	tail
UHGV-0086318_48	eggNOG-mapper	33035.JPJF01000093_gene2235	Collagen triple helix repeat (20 copies)	NA
UHGV-0086318_48	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0086318_48	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0086318_49	PHROG	phrog_24267	NA	unknown function
UHGV-0086318_49	UniRef90	UniRef90_R5LPM8	Putative truncated prophage LambdaSa1 minor structural protein	NA
UHGV-0086318_49	eggNOG-mapper	1123302.KB904167_gene530	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0086318_49	COG	COG4675	Phage tail collar domain	NA
UHGV-0086318_49	Structural annotation	COG4675	NA	NA