UHGV-0086437

Genome information

vOTU vOTU-042060

Genome length 26,452 bps

CDS count 41

Completeness 89.31% (medium-quality)

geNomad score 0.9711

Prediction confidence Confident

Genome information
Genome ID	UHGV-0086437
vOTU ID	vOTU-042060
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_185713
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.31% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9711
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.73
Jumbo phage	No

Genome content
Genome length	26,452 bps
GC content	62.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	94.01%
Average CDS length	609.29 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0086437_3	PHROG	phrog_156	portal protein	head and packaging
UHGV-0086437_3	Structural annotation	PF12236, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0086437_4	KOfam	K07273	acm; lysozyme	NA
UHGV-0086437_4	PHROG	phrog_291	endolysin	lysis
UHGV-0086437_4	UniRef90	UniRef90_A0A3D2G0D9	Cpl-7 domain-containing protein	NA
UHGV-0086437_4	eggNOG-mapper	1123263.AUKY01000046_gene483	Glycosyl hydrolases family 25	NA
UHGV-0086437_4	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0086437_4	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0086437_4	COG	COG1388	LysM repeat	NA
UHGV-0086437_4	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0086437_6	PHROG	phrog_6779	tail protein	tail
UHGV-0086437_6	Structural annotation	PF20747	NA	NA
UHGV-0086437_7	Structural annotation	PF14594, TIGR01646, COG4926	NA	NA
UHGV-0086437_8	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0086437_9	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0086437_9	UniRef90	UniRef90_A0A352NC17	Phage tail protein (Fragment)	NA
UHGV-0086437_9	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-0086437_9	COG	COG5412	Phage-related protein	NA
UHGV-0086437_10	PHROG	phrog_1633	NA	unknown function
UHGV-0086437_10	UniRef90	UniRef90_A0A139QHL2	NA	NA
UHGV-0086437_10	eggNOG-mapper	585203.SMSK564_1277	NA	NA
UHGV-0086437_10	Pfam	PF17318	NA	DUF5361
UHGV-0086437_10	Structural annotation	PF17318	NA	NA
UHGV-0086437_11	PHROG	phrog_1526	NA	unknown function
UHGV-0086437_12	PHROG	phrog_117	major tail protein	tail
UHGV-0086437_12	UniRef90	UniRef90_UPI00156E6ACC	phage tail protein	NA
UHGV-0086437_12	eggNOG-mapper	875454.BAEW01000017_gene1590	domain, Protein	NA
UHGV-0086437_12	COG	COG5492	NA	NA
UHGV-0086437_12	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0086437_13	PHROG	phrog_123	tail terminator	connector
UHGV-0086437_13	UniRef90	UniRef90_A0A139NAV0	Phage-associated protein	NA
UHGV-0086437_13	eggNOG-mapper	1280698.AUJS01000007_gene1043	NA	NA
UHGV-0086437_13	Structural annotation	PF06141	NA	NA
UHGV-0086437_14	PHROG	phrog_387	neck protein	connector
UHGV-0086437_14	UniRef90	UniRef90_A0A0E4H9B2	NA	NA
UHGV-0086437_14	eggNOG-mapper	908337.HMPREF9257_0534	NA	NA
UHGV-0086437_15	PHROG	phrog_501	head closure Hc1	connector
UHGV-0086437_15	UniRef90	UniRef90_A0A0R1K4H9	NA	NA
UHGV-0086437_15	eggNOG-mapper	1280698.AUJS01000007_gene1041	NA	NA
UHGV-0086437_15	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0086437_16	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0086437_16	UniRef90	UniRef90_J5WG12	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0086437_16	eggNOG-mapper	1280698.AUJS01000007_gene1040	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0086437_16	Pfam	PF09355	NA	Phage_Gp19
UHGV-0086437_16	Structural annotation	PF09355	NA	NA
UHGV-0086437_17	UniRef90	UniRef90_A0A139CX64	Gp6 protein	NA
UHGV-0086437_17	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0086437_17	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0086437_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0086437_17	Structural annotation	PF12733	NA	NA
UHGV-0086437_18	PHROG	phrog_32396	NA	unknown function
UHGV-0086437_18	UniRef90	UniRef90_UPI00189E3B76	phage major capsid protein	NA
UHGV-0086437_18	eggNOG-mapper	1321784.HMPREF1987_01073	Phage capsid family	NA
UHGV-0086437_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0086437_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0086437_19	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0086437_19	UniRef90	UniRef90_A0A2S0L5H5	Phage scaffold protein	NA
UHGV-0086437_19	eggNOG-mapper	706433.HMPREF9430_01266	NA	NA
UHGV-0086437_19	Pfam	PF14265	NA	DUF4355
UHGV-0086437_20	PHROG	phrog_17688	NA	unknown function
UHGV-0086437_20	UniRef90	UniRef90_UPI001960D3D4	terminase large subunit	NA
UHGV-0086437_20	eggNOG-mapper	1280698.AUJS01000007_gene1036	phage terminase, large subunit	NA
UHGV-0086437_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0086437_20	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0086437_21	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-0086437_21	UniRef90	UniRef90_J5WFW3	CdiA_C domain-containing protein	NA
UHGV-0086437_21	eggNOG-mapper	936375.HMPREF1152_0675	NA	NA
UHGV-0086437_21	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-0086437_21	Structural annotation	PF18451, TIGR01641	NA	NA
UHGV-0086437_22	PHROG	phrog_7104	NA	unknown function
UHGV-0086437_22	eggNOG-mapper	665950.HMPREF1025_02536	NA	NA
UHGV-0086437_23	PHROG	phrog_104	portal protein	head and packaging
UHGV-0086437_23	UniRef90	UniRef90_UPI001A9C29A4	phage portal protein	NA
UHGV-0086437_23	eggNOG-mapper	1280698.AUJS01000007_gene1033	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0086437_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0086437_24	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0086437_24	UniRef90	UniRef90_E7FQH8	HNH endonuclease domain protein	NA
UHGV-0086437_24	eggNOG-mapper	1423775.BAMN01000011_gene610	HNH nucleases	NA
UHGV-0086437_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0086437_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0086437_25	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-0086437_26	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0086437_26	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0086437_26	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0086437_29	UniRef90	UniRef90_A0A350U007	DNA-binding protein	NA
UHGV-0086437_29	eggNOG-mapper	1280673.AUJJ01000020_gene1343	Nucleotidyltransferase domain	NA
UHGV-0086437_29	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0086437_29	COG	COG1669	Predicted nucleotidyltransferase MJ0435	NA
UHGV-0086437_29	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0086437_31	PHROG	phrog_3777	NA	unknown function
UHGV-0086437_31	UniRef90	UniRef90_UPI001D08CA4B	NA	NA
UHGV-0086437_31	eggNOG-mapper	665956.HMPREF1032_02664	NA	NA
UHGV-0086437_31	Pfam	PF12957	NA	DUF3846
UHGV-0086437_31	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0086437_31	Structural annotation	PF12957	NA	NA
UHGV-0086437_32	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0086437_32	PHROG	phrog_27290	NA	unknown function
UHGV-0086437_32	UniRef90	UniRef90_UPI001B1AF633	ParB/RepB/Spo0J family partition protein	NA
UHGV-0086437_32	eggNOG-mapper	1415774.U728_489	Belongs to the ParB family	NA
UHGV-0086437_32	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0086437_32	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0086437_32	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0086437_33	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0086437_33	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0086437_33	UniRef90	UniRef90_A0A2N2CMQ6	AAA_31 domain-containing protein	NA
UHGV-0086437_33	eggNOG-mapper	411463.EUBVEN_00461	CobQ CobB MinD ParA nucleotide binding domain	NA
UHGV-0086437_33	Pfam	PF13614	AAA domain	AAA_31
UHGV-0086437_33	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0086437_33	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0086437_34	Structural annotation	PF01157	NA	NA
UHGV-0086437_35	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0086437_35	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0086437_35	UniRef90	UniRef90_A0A3D1V9Y4	DNA helicase	NA
UHGV-0086437_35	eggNOG-mapper	1007096.BAGW01000033_gene1616	DnaB-like helicase N terminal domain	NA
UHGV-0086437_35	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0086437_35	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0086437_35	COG	COG0305	Replicative DNA helicase	NA
UHGV-0086437_35	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0086437_36	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0086437_36	UniRef90	UniRef90_UPI001F33ADD3	helix-turn-helix domain-containing protein	NA
UHGV-0086437_36	eggNOG-mapper	693746.OBV_30130	NA	NA
UHGV-0086437_36	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0086437_36	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0086437_36	Structural annotation	PF02295, MF_01819, TIGR04176, COG3355	NA	NA
UHGV-0086437_38	PHROG	phrog_66	excisionase and transcriptional regulator	integration and excision
UHGV-0086437_38	UniRef90	UniRef90_A0A1Y3RP45	HTH_17 domain-containing protein	NA
UHGV-0086437_38	eggNOG-mapper	1414720.CBYM010000001_gene815	DNA binding domain, excisionase family	NA
UHGV-0086437_38	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0086437_38	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0086437_38	COG	COG1910	Periplasmic molybdate-binding protein/domain	NA
UHGV-0086437_38	Structural annotation	PF12728, MF_01155, TIGR01764, COG3311	NA	NA
UHGV-0086437_39	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0086437_39	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0086437_39	UniRef90	UniRef90_A0A2N2CPV3	Transcriptional regulator	NA
UHGV-0086437_39	eggNOG-mapper	742738.HMPREF9460_04043	Helix-turn-helix XRE-family like proteins	NA
UHGV-0086437_39	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0086437_39	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0086437_39	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0086437_40	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0086437_40	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0086437_40	UniRef90	UniRef90_UPI001C3AD03E	Helix-turn-helix domain-containing protein	NA
UHGV-0086437_40	eggNOG-mapper	1226322.HMPREF1545_02925	Helix-turn-helix XRE-family like proteins	NA
UHGV-0086437_40	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0086437_40	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0086437_40	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0086437_41	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0086437_41	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0086437_41	UniRef90	UniRef90_A0A845MZE2	Helix-turn-helix domain-containing protein	NA
UHGV-0086437_41	eggNOG-mapper	1235792.C808_00789	Helix-turn-helix XRE-family like proteins	NA
UHGV-0086437_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0086437_41	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0086437_41	Structural annotation	PF12844, MF_02017, NF007257, COG1396	NA	NA