UHGV-0086543

Genome information

Genome length 15,574 bps

CDS count 20

Completeness 72.38% (medium-quality)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-0086543
vOTU ID	vOTU-016344
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_195872
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.38% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.77
Jumbo phage	No

Genome content
Genome length	15,574 bps
GC content	32.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	20
CDS density	94.66%
Average CDS length	741.90 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0086543_1	KOfam	K01596	E4.1.1.32, pckA, PCK; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]	NA
UHGV-0086543_1	UniRef90	UniRef90_A0A3D1HVF1	Phosphoenolpyruvate carboxykinase (Fragment)	NA
UHGV-0086543_1	eggNOG-mapper	1235835.C814_00029	Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle	NA
UHGV-0086543_1	Pfam	PF00821	Phosphoenolpyruvate carboxykinase C-terminal P-loop domain	PEPCK_GTP
UHGV-0086543_1	COG	COG1274	Phosphoenolpyruvate carboxykinase, GTP-dependent	NA
UHGV-0086543_8	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0086543_8	UniRef90	UniRef90_J9GJ47	SsDNA binding protein (Fragment)	NA
UHGV-0086543_8	eggNOG-mapper	307240.Q5ILD0_9VIRU	Pfam:Phi29_Phage_SSB	NA
UHGV-0086543_8	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0086543_8	Structural annotation	PF17427	NA	NA
UHGV-0086543_9	PHROG	phrog_10365	late transcriptional activator	transcription regulation
UHGV-0086543_9	Pfam	PF05464	Phi-29-like late genes activator (early protein GP4)	Phi-29_GP4
UHGV-0086543_9	Structural annotation	PF05464	NA	NA
UHGV-0086543_10	Structural annotation	PF05435	NA	NA
UHGV-0086543_11	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0086543_11	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0086543_11	UniRef90	UniRef90_A0A355RJ67	DNA-directed DNA polymerase	NA
UHGV-0086543_11	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0086543_11	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0086543_11	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0086543_12	PHROG	phrog_2150	terminase	head and packaging
UHGV-0086543_12	UniRef90	UniRef90_A0A355RJE0	DNA encapsidation protein	NA
UHGV-0086543_12	eggNOG-mapper	10753.B7SSN7_BPNF	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0086543_12	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0086543_12	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0086543_16	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0086543_16	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-0086543_16	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-0086543_16	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0086543_17	PHROG	phrog_2248	tail protein	tail
UHGV-0086543_17	UniRef90	UniRef90_A0A345MZG4	Tail protein	NA
UHGV-0086543_17	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0086543_17	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0086543_17	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0086543_17	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0086543_18	PHROG	phrog_2038	upper collar connector	connector
UHGV-0086543_18	UniRef90	UniRef90_A0A345MZG5	Upper collar protein	NA
UHGV-0086543_18	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-0086543_18	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0086543_18	Structural annotation	PF05352, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0086543_19	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0086543_19	UniRef90	UniRef90_A0A345MZG6	Lower collar protein	NA
UHGV-0086543_19	eggNOG-mapper	10753.B7SSN2_BPNF	NA	NA
UHGV-0086543_20	PHROG	phrog_14029	NA	unknown function
UHGV-0086543_20	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0086543_20	COG	COG0729	Outer membrane translocation and assembly module TamA	NA
UHGV-0086543_20	Structural annotation	PF09992, COG4632	NA	NA