UHGV-0086652

Genome information

Genome length 36,959 bps

CDS count 54

Completeness 99.90% (high-quality)

geNomad score 0.9727

Prediction confidence Confident

Genome information
Genome ID	UHGV-0086652
vOTU ID	vOTU-013169
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_177392
BioSample	SAMEA3449227
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9727
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.3
Jumbo phage	No

Genome content
Genome length	36,959 bps
GC content	39.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	90.64%
Average CDS length	623.17 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0086652_1	KOfam	K03088	rpoE; RNA polymerase sigma-70 factor, ECF subfamily	NA
UHGV-0086652_1	PHROG	phrog_1740	RNA polymerase sigma factor	transcription regulation
UHGV-0086652_1	UniRef90	UniRef90_UPI0015F455B4	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0086652_1	eggNOG-mapper	411474.COPEUT_02341	DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog	NA
UHGV-0086652_1	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0086652_1	Pfam	PF07638	ECF sigma factor	Sigma70_ECF
UHGV-0086652_1	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0086652_1	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0086652_1	Structural annotation	PF07638, MF_00245, TIGR02954, COG1595	NA	NA
UHGV-0086652_2	KOfam	K14059	int; integrase	NA
UHGV-0086652_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0086652_2	UniRef90	UniRef90_A0A373XME4	Site-specific integrase	NA
UHGV-0086652_2	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-0086652_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0086652_2	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0086652_2	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0086652_3	PHROG	phrog_10292	NA	unknown function
UHGV-0086652_3	UniRef90	UniRef90_A0A413K8M0	TM2 domain-containing protein	NA
UHGV-0086652_3	eggNOG-mapper	537013.CLOSTMETH_02269	TM2 domain	NA
UHGV-0086652_3	Pfam	PF05154	TM2 domain	TM2
UHGV-0086652_3	COG	COG2314	NA	NA
UHGV-0086652_4	eggNOG-mapper	679192.HMPREF9013_1325	NA	NA
UHGV-0086652_5	PHROG	phrog_87	metallo-protease	other
UHGV-0086652_5	UniRef90	UniRef90_A7VVX5	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0086652_5	eggNOG-mapper	428125.CLOLEP_02739	NA	NA
UHGV-0086652_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0086652_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0086652_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0086652_6	UniRef90	UniRef90_A0A413K864	XRE family transcriptional regulator	NA
UHGV-0086652_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0086652_6	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0086652_7	eggNOG-mapper	97138.C820_00203	Transcriptional	NA
UHGV-0086652_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0086652_10	PHROG	phrog_3882	NA	unknown function
UHGV-0086652_11	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0086652_11	UniRef90	UniRef90_A0A413K8G3	NA	NA
UHGV-0086652_11	eggNOG-mapper	445974.CLORAM_02962	NA	NA
UHGV-0086652_11	Structural annotation	COG2250	NA	NA
UHGV-0086652_14	UniRef90	UniRef90_A0A2N0ULT9	DNA binding domain, excisionase family	NA
UHGV-0086652_14	eggNOG-mapper	1283300.ATXB01000001_gene1737	DNA excision	NA
UHGV-0086652_14	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0086652_14	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0086652_14	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0086652_14	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0086652_17	Structural annotation	PF04570, COG2075	NA	NA
UHGV-0086652_18	PHROG	phrog_674	NA	unknown function
UHGV-0086652_18	UniRef90	UniRef90_A0A374N9T8	NA	NA
UHGV-0086652_18	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-0086652_18	Pfam	PF07083	NA	DUF1351
UHGV-0086652_18	Structural annotation	PF07083	NA	NA
UHGV-0086652_19	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0086652_19	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0086652_19	UniRef90	UniRef90_A0A374N9W0	Recombinase	NA
UHGV-0086652_19	eggNOG-mapper	428127.EUBDOL_01509	RecT family	NA
UHGV-0086652_19	Pfam	PF03837	RecT family	RecT
UHGV-0086652_19	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0086652_19	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0086652_19	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0086652_20	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0086652_20	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0086652_20	UniRef90	UniRef90_A0A373XYI8	MBL fold metallo-hydrolase	NA
UHGV-0086652_20	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0086652_20	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0086652_20	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0086652_20	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0086652_21	PHROG	phrog_398	NA	unknown function
UHGV-0086652_21	UniRef90	UniRef90_UPI000C7B20DA	putative HNHc nuclease	NA
UHGV-0086652_21	eggNOG-mapper	293826.Amet_2584	Putative HNHc nuclease	NA
UHGV-0086652_21	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0086652_21	Structural annotation	PF16784	NA	NA
UHGV-0086652_22	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0086652_22	UniRef90	UniRef90_A0A374NA85	NA	NA
UHGV-0086652_22	eggNOG-mapper	1235790.C805_00030	NA	NA
UHGV-0086652_22	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0086652_22	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0086652_22	Structural annotation	PF14297	NA	NA
UHGV-0086652_23	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0086652_23	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0086652_23	UniRef90	UniRef90_A0A374MYR7	IstB_IS21 domain-containing protein	NA
UHGV-0086652_23	eggNOG-mapper	1507.HMPREF0262_00302	Bacterial dnaA protein	NA
UHGV-0086652_23	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0086652_23	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0086652_23	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0086652_24	PHROG	phrog_824	NA	unknown function
UHGV-0086652_24	UniRef90	UniRef90_A0A374MXE9	VRR-NUC domain-containing protein	NA
UHGV-0086652_24	eggNOG-mapper	1235792.C808_00622	VRR_NUC	NA
UHGV-0086652_24	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0086652_24	Structural annotation	PF08774	NA	NA
UHGV-0086652_25	UniRef90	UniRef90_A0A374NAD2	GIY-YIG domain-containing protein	NA
UHGV-0086652_25	eggNOG-mapper	1078085.HMPREF1210_01161	GIY-YIG catalytic domain	NA
UHGV-0086652_25	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0086652_25	Structural annotation	PF19835, TIGR01453	NA	NA
UHGV-0086652_28	PHROG	phrog_5051	NA	unknown function
UHGV-0086652_28	UniRef90	UniRef90_Q9AZ97	Orf197	NA
UHGV-0086652_28	eggNOG-mapper	257314.LJ_1445	NA	NA
UHGV-0086652_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0086652_30	UniRef90	UniRef90_A0A2N0UXQ6	NA	NA
UHGV-0086652_30	eggNOG-mapper	1401067.HMPREF0872_06835	NA	NA
UHGV-0086652_30	Pfam	PF07374	NA	DUF1492
UHGV-0086652_30	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0086652_31	PHROG	phrog_3634	NA	unknown function
UHGV-0086652_31	eggNOG-mapper	411459.RUMOBE_00941	COG NOG22561 non supervised orthologous group	NA
UHGV-0086652_31	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-0086652_31	Structural annotation	PF10137, MF_03036, TIGR03646, COG4271	NA	NA
UHGV-0086652_32	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0086652_32	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0086652_32	UniRef90	UniRef90_A0A2N0UXP4	Terminase small subunit	NA
UHGV-0086652_32	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-0086652_32	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0086652_32	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0086652_32	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0086652_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0086652_33	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0086652_33	UniRef90	UniRef90_A0A374N1S8	Terminase	NA
UHGV-0086652_33	eggNOG-mapper	1282664.H354_06621	Phage terminase, large subunit, PBSX family	NA
UHGV-0086652_33	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0086652_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-0086652_33	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0086652_34	PHROG	phrog_533	portal protein	head and packaging
UHGV-0086652_34	UniRef90	UniRef90_A0A3D0XB31	Capsid protein	NA
UHGV-0086652_34	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0086652_34	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0086652_35	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0086652_35	UniRef90	UniRef90_A0A373KU77	Minor capsid protein	NA
UHGV-0086652_35	eggNOG-mapper	742740.HMPREF9474_03503	Phage minor capsid protein 2	NA
UHGV-0086652_35	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0086652_35	COG	COG2369	NA	NA
UHGV-0086652_35	Structural annotation	PF06152, PF03496, NF041404	NA	NA
UHGV-0086652_36	PHROG	phrog_20195	NA	unknown function
UHGV-0086652_37	PHROG	phrog_2616	NA	unknown function
UHGV-0086652_37	Structural annotation	PF01281	NA	NA
UHGV-0086652_38	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0086652_38	eggNOG-mapper	1304866.K413DRAFT_0806	NA	NA
UHGV-0086652_39	PHROG	phrog_422	major head protein	head and packaging
UHGV-0086652_39	UniRef90	UniRef90_UPI001C03381A	phage capsid protein	NA
UHGV-0086652_39	eggNOG-mapper	445972.ANACOL_01845	NA	NA
UHGV-0086652_39	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0086652_40	eggNOG-mapper	483218.BACPEC_01153	NA	NA
UHGV-0086652_41	PHROG	phrog_8710	NA	unknown function
UHGV-0086652_41	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-0086652_41	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0086652_42	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0086652_42	eggNOG-mapper	483218.BACPEC_01151	NA	NA
UHGV-0086652_43	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0086652_43	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-0086652_43	eggNOG-mapper	1123263.AUKY01000051_gene1075	NA	NA
UHGV-0086652_43	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0086652_43	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0086652_44	PHROG	phrog_820	major tail protein	tail
UHGV-0086652_44	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-0086652_44	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0086652_45	PHROG	phrog_8300	NA	unknown function
UHGV-0086652_45	eggNOG-mapper	483218.BACPEC_01148	NA	NA
UHGV-0086652_45	Structural annotation	PF06854	NA	NA
UHGV-0086652_46	PHROG	phrog_8355	NA	unknown function
UHGV-0086652_46	UniRef90	UniRef90_UPI001C0B4BD8	Gp15 family bacteriophage protein	NA
UHGV-0086652_46	eggNOG-mapper	1262449.CP6013_3207	NA	NA
UHGV-0086652_47	PHROG	phrog_5319	outer membrane protein	other
UHGV-0086652_47	UniRef90	UniRef90_A0A1Q6JN93	zinc_ribbon_2 domain-containing protein	NA
UHGV-0086652_47	eggNOG-mapper	1042156.CXIVA_15870	sh3 domain protein	NA
UHGV-0086652_47	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0086652_47	COG	COG3103	NA	NA
UHGV-0086652_47	Structural annotation	PF03843, PF12773, MF_00984, TIGR00752, COG3065	NA	NA
UHGV-0086652_48	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0086652_48	UniRef90	UniRef90_A0A2N0UYY1	Phage-related protein	NA
UHGV-0086652_48	eggNOG-mapper	1160721.RBI_II00528	Phage tail tape measure protein, TP901 family	NA
UHGV-0086652_48	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-0086652_48	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0086652_49	PHROG	phrog_1194	NA	unknown function
UHGV-0086652_49	UniRef90	UniRef90_A0A8D9PDT1	YolD-like protein	NA
UHGV-0086652_49	eggNOG-mapper	1304866.K413DRAFT_3047	NA	NA
UHGV-0086652_49	Pfam	PF20458	NA	DUF6711
UHGV-0086652_49	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0086652_50	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0086652_51	Structural annotation	PF08931	NA	NA
UHGV-0086652_53	PHROG	phrog_199	holin	lysis
UHGV-0086652_53	UniRef90	UniRef90_A0A2N0ULW7	Holin	NA
UHGV-0086652_53	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0086652_53	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0086652_53	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0086652_53	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0086652_53	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0086652_54	PHROG	phrog_918	NA	unknown function
UHGV-0086652_54	UniRef90	UniRef90_UPI00164AB9AF	NA	NA
UHGV-0086652_54	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-0086652_54	Pfam	PF19791	NA	DUF6275
UHGV-0086652_54	Structural annotation	PF19791	NA	NA