UHGV-0086672

Genome information

Genome length 29,080 bps

CDS count 43

Completeness 83.47% (medium-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0086672
vOTU ID	vOTU-023966
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_185108
BioSample	SAMEA3449348
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.47% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.11
Jumbo phage	No

Genome content
Genome length	29,080 bps
GC content	57.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	93.85%
Average CDS length	636.70 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0086672_1	KOfam	K01091	gph; phosphoglycolate phosphatase [EC:3.1.3.18]	NA
UHGV-0086672_1	eggNOG-mapper	626939.HMPREF9443_00049	Phosphoglycolate phosphatase	NA
UHGV-0086672_1	Pfam	PF13419	Haloacid dehalogenase-like hydrolase	HAD_2
UHGV-0086672_1	COG	COG0546	Phosphoglycolate phosphatase, HAD superfamily	NA
UHGV-0086672_2	KOfam	K14059	int; integrase	NA
UHGV-0086672_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0086672_2	UniRef90	UniRef90_A0A212JT52	Putative Integrase family protein	NA
UHGV-0086672_2	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0086672_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0086672_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0086672_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0086672_2	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0086672_3	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0086672_3	UniRef90	UniRef90_R6IC10	SWIM-type domain-containing protein	NA
UHGV-0086672_3	Pfam	PF04434	SWIM zinc finger	SWIM
UHGV-0086672_3	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0086672_3	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-0086672_3	Structural annotation	PF04471, MF_00722, NF002876, COG1787	NA	NA
UHGV-0086672_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0086672_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0086672_4	UniRef90	UniRef90_R5AVU4	CI-like repressor	NA
UHGV-0086672_4	eggNOG-mapper	1220551.SCHR_06575	transcriptional	NA
UHGV-0086672_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0086672_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0086672_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0086672_6	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0086672_6	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0086672_6	UniRef90	UniRef90_A0A2U1BEG8	Helix-turn-helix protein	NA
UHGV-0086672_6	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0086672_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0086672_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0086672_6	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0086672_9	PHROG	phrog_7566	NA	unknown function
UHGV-0086672_9	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0086672_9	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0086672_10	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0086672_11	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0086672_11	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0086672_11	UniRef90	UniRef90_R5B3P3	Transcriptional regulator AbrB family	NA
UHGV-0086672_11	eggNOG-mapper	1382304.JNIL01000001_gene2139	AbrB family transcriptional regulator	NA
UHGV-0086672_11	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0086672_11	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0086672_11	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0086672_11	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0086672_14	eggNOG-mapper	1232449.BAHV02000016_gene1829	NA	NA
UHGV-0086672_15	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0086672_15	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0086672_15	UniRef90	UniRef90_A0A350THX9	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0086672_15	eggNOG-mapper	1121334.KB911073_gene1852	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0086672_15	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0086672_15	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0086672_15	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0086672_15	Structural annotation	PF00145, MF_02237, TIGR00675, COG0270	NA	NA
UHGV-0086672_16	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0086672_16	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-0086672_16	eggNOG-mapper	1519439.JPJG01000059_gene1910	NA	NA
UHGV-0086672_17	PHROG	phrog_1029	NA	unknown function
UHGV-0086672_17	eggNOG-mapper	1203606.HMPREF1526_01890	NA	NA
UHGV-0086672_17	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0086672_18	PHROG	phrog_5781	NA	unknown function
UHGV-0086672_18	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0086672_18	Pfam	PF14359	NA	DUF4406
UHGV-0086672_18	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0086672_18	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0086672_19	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0086672_19	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0086672_19	eggNOG-mapper	293826.Amet_2596	NA	NA
UHGV-0086672_19	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0086672_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0086672_21	UniRef90	UniRef90_UPI001C10AB33	NA	NA
UHGV-0086672_21	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0086672_21	Pfam	PF07374	NA	DUF1492
UHGV-0086672_21	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0086672_22	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0086672_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0086672_23	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0086672_23	UniRef90	UniRef90_A0A416S378	PBSX family phage terminase large subunit	NA
UHGV-0086672_23	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0086672_23	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0086672_23	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0086672_23	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0086672_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0086672_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0086672_23	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0086672_24	PHROG	phrog_1233	NA	unknown function
UHGV-0086672_24	eggNOG-mapper	1415774.U728_832	NA	NA
UHGV-0086672_24	Structural annotation	PF13058	NA	NA
UHGV-0086672_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0086672_25	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-0086672_25	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0086672_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0086672_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0086672_26	UniRef90	UniRef90_A0A3D4T830	Phage capsid protein	NA
UHGV-0086672_26	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-0086672_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0086672_26	Pfam	PF15644	Papain fold toxin 1, glutamine deamidase	Gln_amidase
UHGV-0086672_26	COG	COG2369	NA	NA
UHGV-0086672_26	Structural annotation	PF06152	NA	NA
UHGV-0086672_29	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0086672_29	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0086672_29	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-0086672_29	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0086672_29	Structural annotation	PF06810	NA	NA
UHGV-0086672_30	PHROG	phrog_267	major head protein	head and packaging
UHGV-0086672_30	eggNOG-mapper	33035.JPJF01000030_gene2294	NA	NA
UHGV-0086672_30	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0086672_31	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0086672_31	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0086672_32	PHROG	phrog_3366	NA	unknown function
UHGV-0086672_32	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0086672_33	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0086672_33	UniRef90	UniRef90_A0A1H7MNM8	Minor capsid protein	NA
UHGV-0086672_33	eggNOG-mapper	33035.JPJF01000106_gene3128	NA	NA
UHGV-0086672_33	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0086672_33	Structural annotation	PF11114	NA	NA
UHGV-0086672_34	PHROG	phrog_3266	tail completion	connector
UHGV-0086672_34	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0086672_34	Structural annotation	PF12691	NA	NA
UHGV-0086672_35	PHROG	phrog_3099	NA	unknown function
UHGV-0086672_35	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-0086672_35	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0086672_36	PHROG	phrog_11299	NA	unknown function
UHGV-0086672_36	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0086672_36	Structural annotation	PF10666	NA	NA
UHGV-0086672_37	PHROG	phrog_706	NA	unknown function
UHGV-0086672_37	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0086672_37	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0086672_37	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0086672_37	Structural annotation	PF06854	NA	NA
UHGV-0086672_38	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0086672_38	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0086672_38	eggNOG-mapper	1449050.JNLE01000003_gene3881	domain protein	NA
UHGV-0086672_38	COG	COG1511	NA	NA
UHGV-0086672_39	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0086672_40	PHROG	phrog_6616	tail protein	tail
UHGV-0086672_41	eggNOG-mapper	411473.RUMCAL_00420	nuclear chromosome segregation	NA
UHGV-0086672_41	Pfam	PF03406	Phage tail fibre repeat	Phage_fiber_2
UHGV-0086672_41	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0086672_42	Structural annotation	PF00629, NF033675	NA	NA
UHGV-0086672_43	PHROG	phrog_1794	amidase	lysis
UHGV-0086672_43	eggNOG-mapper	411468.CLOSCI_00531	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0086672_43	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA