UHGV-0086677

Genome information

vOTU vOTU-042019

Genome length 22,642 bps

CDS count 36

Completeness 64.99% (medium-quality)

geNomad score 0.9527

Prediction confidence Confident

Genome information
Genome ID	UHGV-0086677
vOTU ID	vOTU-042019
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_191290
BioSample	SAMEA3449287
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.99% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	3
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9527
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.61
Jumbo phage	No

Genome content
Genome length	22,642 bps
GC content	53.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	87.68%
Average CDS length	553.58 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0086677_1	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0086677_2	PHROG	phrog_1233	NA	unknown function
UHGV-0086677_2	eggNOG-mapper	1415774.U728_832	NA	NA
UHGV-0086677_2	Structural annotation	PF13058	NA	NA
UHGV-0086677_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0086677_3	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0086677_3	UniRef90	UniRef90_A0A416S378	PBSX family phage terminase large subunit	NA
UHGV-0086677_3	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0086677_3	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0086677_3	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0086677_3	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0086677_3	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0086677_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-0086677_3	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0086677_4	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0086677_5	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0086677_5	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0086677_5	Pfam	PF07374	NA	DUF1492
UHGV-0086677_5	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0086677_7	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0086677_7	eggNOG-mapper	293826.Amet_2596	NA	NA
UHGV-0086677_7	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0086677_8	PHROG	phrog_5781	NA	unknown function
UHGV-0086677_8	UniRef90	UniRef90_A0A810Q4L2	NA	NA
UHGV-0086677_8	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0086677_8	Pfam	PF14359	NA	DUF4406
UHGV-0086677_8	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0086677_8	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0086677_9	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0086677_9	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0086677_9	UniRef90	UniRef90_R9MCP5	DNA adenine methylase	NA
UHGV-0086677_9	eggNOG-mapper	1235799.C818_02654	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0086677_9	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0086677_9	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0086677_9	COG	COG0338	DNA-adenine methylase	NA
UHGV-0086677_9	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0086677_10	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0086677_10	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0086677_10	UniRef90	UniRef90_A0A350THX9	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0086677_10	eggNOG-mapper	1121334.KB911073_gene1852	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0086677_10	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0086677_10	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0086677_10	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0086677_10	Structural annotation	PF00145, MF_02237, TIGR00675, COG0270	NA	NA
UHGV-0086677_11	KOfam	K03700	recU; recombination protein U	NA
UHGV-0086677_11	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0086677_11	UniRef90	UniRef90_A0A1H0W5Y9	Holliday junction resolvase RecU	NA
UHGV-0086677_11	eggNOG-mapper	537013.CLOSTMETH_01720	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0086677_11	Pfam	PF03838	Recombination protein U	RecU
UHGV-0086677_11	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0086677_11	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0086677_12	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0086677_12	eggNOG-mapper	411470.RUMGNA_02047	NA	NA
UHGV-0086677_12	Structural annotation	PF21578	NA	NA
UHGV-0086677_15	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0086677_15	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0086677_15	UniRef90	UniRef90_UPI0018F33479	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0086677_15	eggNOG-mapper	268407.PWYN_12320	AbrB family transcriptional regulator	NA
UHGV-0086677_15	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0086677_15	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0086677_15	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0086677_15	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0086677_16	Structural annotation	PF12728	NA	NA
UHGV-0086677_17	UniRef90	UniRef90_A0A357TPS2	DNA-binding protein	NA
UHGV-0086677_17	eggNOG-mapper	1347392.CCEZ01000005_gene1206	NA	NA
UHGV-0086677_17	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0086677_18	PHROG	phrog_5663	NA	unknown function
UHGV-0086677_18	UniRef90	UniRef90_A0A3E3E476	NA	NA
UHGV-0086677_18	Pfam	PF10386	NA	DUF2441
UHGV-0086677_18	Structural annotation	PF10386	NA	NA
UHGV-0086677_21	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0086677_21	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0086677_21	UniRef90	UniRef90_K1UM29	Helix-turn-helix domain protein (Fragment)	NA
UHGV-0086677_21	eggNOG-mapper	903814.ELI_1263	Helix-turn-helix domain	NA
UHGV-0086677_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0086677_21	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0086677_21	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0086677_23	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0086677_23	PHROG	phrog_19856	NA	unknown function
UHGV-0086677_23	eggNOG-mapper	1235790.C805_00010	Restriction endonuclease	NA
UHGV-0086677_23	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0086677_23	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0086677_23	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0086677_24	Structural annotation	PF21227	NA	NA
UHGV-0086677_25	Pfam	PF05973	NA	Gp49
UHGV-0086677_25	Structural annotation	PF05973, TIGR02683, COG4683	NA	NA
UHGV-0086677_26	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0086677_26	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0086677_26	UniRef90	UniRef90_UPI00051ABD2F	helix-turn-helix domain-containing protein	NA
UHGV-0086677_26	eggNOG-mapper	1280688.AUJB01000009_gene1936	Helix-turn-helix XRE-family like proteins	NA
UHGV-0086677_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0086677_26	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0086677_28	PHROG	phrog_5978	NA	unknown function
UHGV-0086677_28	UniRef90	UniRef90_A0A372UZA0	Fic family protein	NA
UHGV-0086677_28	eggNOG-mapper	936375.HMPREF1152_1541	Filamentation induced by cAMP protein fic	NA
UHGV-0086677_28	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0086677_28	COG	COG3177	Fic family protein	NA
UHGV-0086677_28	Structural annotation	PF07183, MF_01911, NF040876, COG3177	NA	NA
UHGV-0086677_29	KOfam	K14059	int; integrase	NA
UHGV-0086677_29	PHROG	phrog_1	integrase	integration and excision
UHGV-0086677_29	UniRef90	UniRef90_UPI001958A27A	site-specific integrase	NA
UHGV-0086677_29	eggNOG-mapper	1203606.HMPREF1526_00215	Phage integrase family	NA
UHGV-0086677_29	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0086677_29	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0086677_29	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0086677_29	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0086677_30	Pfam	PF14106	NA	DUF4279
UHGV-0086677_31	PHROG	phrog_1129	holin	lysis
UHGV-0086677_31	UniRef90	UniRef90_UPI001D084907	phage holin family protein	NA
UHGV-0086677_31	eggNOG-mapper	665956.HMPREF1032_03272	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0086677_31	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0086677_31	Structural annotation	PF06946	NA	NA
UHGV-0086677_32	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0086677_32	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0086677_32	UniRef90	UniRef90_R5AWG7	Putative endonuclease	NA
UHGV-0086677_32	eggNOG-mapper	742738.HMPREF9460_04035	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-0086677_32	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0086677_32	COG	COG4748	NA	NA
UHGV-0086677_32	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-0086677_33	KOfam	K02510	hpaI, hpcH; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52]	NA
UHGV-0086677_33	UniRef90	UniRef90_R5B8D9	HpcH_HpaI domain-containing protein	NA
UHGV-0086677_33	eggNOG-mapper	1121324.CLIT_10c01820	Belongs to the HpcH HpaI aldolase family	NA
UHGV-0086677_33	Pfam	PF03328	HpcH/HpaI aldolase/citrate lyase family	HpcH_HpaI
UHGV-0086677_33	COG	COG3836	2-keto-3-deoxy-L-rhamnonate aldolase RhmA	NA
UHGV-0086677_34	UniRef90	UniRef90_UPI0019568B57	ribbon-helix-helix protein, CopG family	NA
UHGV-0086677_34	eggNOG-mapper	877411.JMMA01000002_gene1754	Ribbon-helix-helix protein, copG family	NA
UHGV-0086677_34	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0086677_35	PHROG	phrog_17982	NA	unknown function
UHGV-0086677_35	eggNOG-mapper	720554.Clocl_1541	NA	NA
UHGV-0086677_35	Pfam	PF14020	NA	DUF4236
UHGV-0086677_35	Structural annotation	PF14020	NA	NA
UHGV-0086677_36	UniRef90	UniRef90_A0A1I2PB03	Nif11 domain-containing protein	NA
UHGV-0086677_36	eggNOG-mapper	1408423.JHYA01000018_gene1680	NA	NA