UHGV-0086743

Genome information

Genome length 32,578 bps

CDS count 47

Completeness 100.00% (complete)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-0086743
vOTU ID	vOTU-000204
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_196335
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.84
Jumbo phage	No

Genome content
Genome length	32,578 bps
GC content	49.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	89.34%
Average CDS length	622.34 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0086743_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0086743_1	PHROG	phrog_7396	NA	unknown function
UHGV-0086743_1	UniRef90	UniRef90_R6P7W0	Helix-turn-helix domain-containing protein	NA
UHGV-0086743_1	eggNOG-mapper	1235797.C816_02851	Helix-turn-helix XRE-family like proteins	NA
UHGV-0086743_1	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0086743_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0086743_1	Structural annotation	PF13560, NF041951, COG1813	NA	NA
UHGV-0086743_3	AcrCatalog	cluster_160566	NA	NA
UHGV-0086743_4	UniRef90	UniRef90_A0A316PXX3	RHH_1 domain-containing protein	NA
UHGV-0086743_4	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0086743_4	Structural annotation	PF01402, NF040976, COG4710	NA	NA
UHGV-0086743_5	KOfam	K07482	K07482; transposase, IS30 family	NA
UHGV-0086743_5	PHROG	phrog_4646	transposase	integration and excision
UHGV-0086743_5	UniRef90	UniRef90_R6CM59	Integrase catalytic domain-containing protein	NA
UHGV-0086743_5	eggNOG-mapper	411459.RUMOBE_01705	COG COG2826 Transposase and inactivated derivatives, IS30 family	NA
UHGV-0086743_5	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0086743_5	NCBIFam	NF033563.0	IS30 family transposase	NA
UHGV-0086743_5	COG	COG2826	Transposase and inactivated derivatives, IS30 family	NA
UHGV-0086743_5	Structural annotation	PF03400, PF13384, NF033563, COG2826	NA	NA
UHGV-0086743_6	KOfam	K07482	K07482; transposase, IS30 family	NA
UHGV-0086743_6	PHROG	phrog_11420	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0086743_6	UniRef90	UniRef90_A0A1Q6L0N6	HTH_38 domain-containing protein	NA
UHGV-0086743_6	eggNOG-mapper	1519439.JPJG01000077_gene919	Helix-turn-helix domain	NA
UHGV-0086743_6	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0086743_6	Structural annotation	PF04218	NA	NA
UHGV-0086743_8	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0086743_8	PHROG	phrog_30550	NA	unknown function
UHGV-0086743_8	UniRef90	UniRef90_A0A316PXP5	Hydrolase_2 domain-containing protein	NA
UHGV-0086743_8	eggNOG-mapper	1519439.JPJG01000077_gene920	Cell Wall Hydrolase	NA
UHGV-0086743_8	Structural annotation	TIGR02869	NA	NA
UHGV-0086743_9	UniRef90	UniRef90_A0A6N8GXT9	Rubredoxin-like domain-containing protein	NA
UHGV-0086743_9	eggNOG-mapper	1203606.HMPREF1526_00236	NA	NA
UHGV-0086743_10	PHROG	phrog_24518	NA	unknown function
UHGV-0086743_10	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0086743_11	eggNOG-mapper	1297617.JPJD01000020_gene313	NA	NA
UHGV-0086743_12	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0086743_12	UniRef90	UniRef90_UPI001D06FFF3	phage N-6-adenine-methyltransferase	NA
UHGV-0086743_12	eggNOG-mapper	445972.ANACOL_03344	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0086743_12	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0086743_12	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0086743_12	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0086743_15	PHROG	phrog_3301	pyrophosphatase	other
UHGV-0086743_15	eggNOG-mapper	1449050.JNLE01000003_gene3900	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0086743_15	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0086743_15	Structural annotation	COG1694	NA	NA
UHGV-0086743_16	PHROG	phrog_9958	NA	unknown function
UHGV-0086743_16	UniRef90	UniRef90_A0A6N8GXR0	NA	NA
UHGV-0086743_16	eggNOG-mapper	1519439.JPJG01000037_gene956	NA	NA
UHGV-0086743_16	Pfam	PF19789	NA	DUF6273
UHGV-0086743_16	Structural annotation	PF19789	NA	NA
UHGV-0086743_18	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0086743_18	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-0086743_18	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0086743_19	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0086743_19	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0086743_19	UniRef90	UniRef90_A0A316PXT8	Methyltransferase	NA
UHGV-0086743_19	eggNOG-mapper	97139.C824_00741	DNA methylase	NA
UHGV-0086743_19	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0086743_19	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0086743_19	COG	COG0863	DNA modification methylase	NA
UHGV-0086743_19	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0086743_20	Pfam	PF14359	NA	DUF4406
UHGV-0086743_20	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0086743_21	PHROG	phrog_824	NA	unknown function
UHGV-0086743_21	UniRef90	UniRef90_A0A316PY60	VRR-NUC domain-containing protein	NA
UHGV-0086743_21	eggNOG-mapper	1408428.JNJP01000030_gene973	VRR_NUC	NA
UHGV-0086743_22	eggNOG-mapper	1297617.JPJD01000020_gene311	NA	NA
UHGV-0086743_22	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0086743_23	PHROG	phrog_1066	NA	unknown function
UHGV-0086743_23	eggNOG-mapper	397290.C810_00417	NA	NA
UHGV-0086743_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0086743_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0086743_24	UniRef90	UniRef90_A0A316PXL1	Terminase large subunit	NA
UHGV-0086743_24	eggNOG-mapper	1519439.JPJG01000037_gene954	Phage Terminase	NA
UHGV-0086743_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0086743_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0086743_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0086743_24	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0086743_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0086743_25	UniRef90	UniRef90_A0A316PZH6	Phage portal protein	NA
UHGV-0086743_25	eggNOG-mapper	411470.RUMGNA_02063	Phage portal protein	NA
UHGV-0086743_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0086743_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0086743_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0086743_26	KOfam	K06904	NA	NA
UHGV-0086743_26	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0086743_26	UniRef90	UniRef90_A0A316PXH0	HK97 family phage prohead protease	NA
UHGV-0086743_26	eggNOG-mapper	1519439.JPJG01000037_gene953	Phage prohead protease, HK97 family	NA
UHGV-0086743_26	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0086743_26	COG	COG3740	Phage head maturation protease	NA
UHGV-0086743_26	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0086743_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-0086743_27	UniRef90	UniRef90_A0A316PXV5	Phage major capsid protein	NA
UHGV-0086743_27	eggNOG-mapper	1297617.JPJD01000020_gene308	Phage capsid family	NA
UHGV-0086743_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0086743_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0086743_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0086743_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0086743_28	PHROG	phrog_5223	neck protein	connector
UHGV-0086743_28	UniRef90	UniRef90_A0A316PXQ4	DNA-packaging protein	NA
UHGV-0086743_28	eggNOG-mapper	561177.ANHYDRO_01411	NA	NA
UHGV-0086743_29	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0086743_29	UniRef90	UniRef90_C9LCM8	Putative phage head-tail adaptor	NA
UHGV-0086743_29	eggNOG-mapper	411470.RUMGNA_02070	NA	NA
UHGV-0086743_29	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0086743_30	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0086743_30	UniRef90	UniRef90_UPI00189B87CA	HK97 gp10 family phage protein	NA
UHGV-0086743_30	eggNOG-mapper	349161.Dred_2601	Phage protein, HK97 gp10 family	NA
UHGV-0086743_30	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0086743_30	Structural annotation	TIGR01725	NA	NA
UHGV-0086743_31	PHROG	phrog_78	tail terminator	connector
UHGV-0086743_31	eggNOG-mapper	573061.Clocel_0788	NA	NA
UHGV-0086743_31	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0086743_32	PHROG	phrog_88	major tail protein	tail
UHGV-0086743_32	UniRef90	UniRef90_A0A316PY24	Phage tail protein	NA
UHGV-0086743_32	eggNOG-mapper	1519439.JPJG01000037_gene949	phage major tail protein, phi13 family	NA
UHGV-0086743_32	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0086743_32	COG	COG5492	NA	NA
UHGV-0086743_32	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0086743_33	PHROG	phrog_2115	tail protein	tail
UHGV-0086743_33	eggNOG-mapper	1297617.JPJD01000020_gene306	NA	NA
UHGV-0086743_33	Structural annotation	PF11836	NA	NA
UHGV-0086743_34	PHROG	phrog_23464	NA	unknown function
UHGV-0086743_34	UniRef90	UniRef90_A0A316PZI6	Phage tail protein	NA
UHGV-0086743_34	eggNOG-mapper	1297617.JPJD01000020_gene305	phage tail tape measure protein	NA
UHGV-0086743_34	COG	COG5412	Phage-related protein	NA
UHGV-0086743_34	Structural annotation	PF20155	NA	NA
UHGV-0086743_35	PHROG	phrog_36410	NA	unknown function
UHGV-0086743_35	UniRef90	UniRef90_A0A316PXI0	Phage tail family protein	NA
UHGV-0086743_35	eggNOG-mapper	411470.RUMGNA_02077	COG NOG18823 non supervised orthologous group	NA
UHGV-0086743_35	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0086743_35	COG	COG4722	Phage-related protein YomH	NA
UHGV-0086743_35	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0086743_36	PHROG	phrog_538	minor tail protein	tail
UHGV-0086743_36	UniRef90	UniRef90_UPI0018985E41	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0086743_36	eggNOG-mapper	397290.C810_00431	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0086743_36	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0086743_36	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0086743_37	PHROG	phrog_1220	head protein	head and packaging
UHGV-0086743_37	UniRef90	UniRef90_E2ELJ8	Truncated putative phage structural protein	NA
UHGV-0086743_37	eggNOG-mapper	1519439.JPJG01000037_gene946	COG NOG18825 non supervised orthologous group	NA
UHGV-0086743_37	Structural annotation	PF20747	NA	NA
UHGV-0086743_38	KOfam	K07496	K07496; putative transposase	NA
UHGV-0086743_38	PHROG	phrog_506	transposase	integration and excision
UHGV-0086743_38	UniRef90	UniRef90_C9L7C6	Transposase, IS605 OrfB family	NA
UHGV-0086743_38	eggNOG-mapper	537007.BLAHAN_05289	NA	NA
UHGV-0086743_38	PADLOC	V_U4	CAS-V-F; effector__SPE	CRISPR-CAS
UHGV-0086743_38	Pfam	PF12323	Helix-turn-helix domain	HTH_OrfB_IS605
UHGV-0086743_38	Pfam	PF01385	Probable transposase	OrfB_IS605
UHGV-0086743_38	Pfam	PF07282	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
UHGV-0086743_38	NCBIFam	NF040570.1	RNA-guided endonuclease TnpB family protein	NA
UHGV-0086743_38	COG	COG0675	Transposase	NA
UHGV-0086743_38	Structural annotation	PF07282, PF01385, NF038281, COG0675	NA	NA
UHGV-0086743_39	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-0086743_39	UniRef90	UniRef90_A0A316Q3U8	Four helix bundle protein	NA
UHGV-0086743_39	eggNOG-mapper	1235797.C816_02835	NA	NA
UHGV-0086743_39	Structural annotation	PF05635, NF008912	NA	NA
UHGV-0086743_40	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0086743_40	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0086743_40	UniRef90	UniRef90_A0A316PXM0	Reverse transcriptase	NA
UHGV-0086743_40	eggNOG-mapper	1235797.C816_02836	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0086743_40	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0086743_40	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0086743_40	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0086743_40	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0086743_41	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0086743_41	UniRef90	UniRef90_A0A316Q3Q6	NA	NA
UHGV-0086743_41	eggNOG-mapper	1235797.C816_02837	NA	NA
UHGV-0086743_41	Pfam	PF19789	NA	DUF6273
UHGV-0086743_41	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0086743_41	Structural annotation	PF19789, PF18911, PF00041, MF_04116, NF032891, COG3979	NA	NA
UHGV-0086743_42	PHROG	phrog_27545	NA	unknown function
UHGV-0086743_42	eggNOG-mapper	742738.HMPREF9460_00363	NA	NA
UHGV-0086743_43	PHROG	phrog_1863	NA	unknown function
UHGV-0086743_43	eggNOG-mapper	1235797.C816_02840	NA	NA
UHGV-0086743_44	KOfam	K03749	dedD; DedD protein	NA
UHGV-0086743_44	PHROG	phrog_20388	endolysin	lysis
UHGV-0086743_44	UniRef90	UniRef90_UPI000689823D	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0086743_44	eggNOG-mapper	1297617.JPJD01000020_gene302	Sporulation related domain	NA
UHGV-0086743_44	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0086743_44	Pfam	PF05036	SPOR domain	SPOR
UHGV-0086743_44	COG	COG3087	Cell division protein FtsN	NA
UHGV-0086743_46	PHROG	phrog_6918	holin	lysis
UHGV-0086743_46	UniRef90	UniRef90_A0A316QCY7	Holin	NA
UHGV-0086743_46	eggNOG-mapper	1297617.JPJD01000020_gene301	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0086743_46	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0086743_46	Structural annotation	PF09682, TIGR01673	NA	NA