UHGV-0086795

Genome information

Genome length 44,869 bps

CDS count 83

Completeness 99.90% (high-quality)

geNomad score 0.9809

Prediction confidence Confident

Genome information
Genome ID	UHGV-0086795
vOTU ID	vOTU-061597
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_195192
BioSample	SAMEA3449333
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9809
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.18
Jumbo phage	No

Genome content
Genome length	44,869 bps
GC content	51.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	83
CDS density	89.68%
Average CDS length	488.46 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0086795_1	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0086795_1	UniRef90	UniRef90_UPI00189CEC52	NA	NA
UHGV-0086795_1	eggNOG-mapper	1232449.BAHV02000016_gene1836	NA	NA
UHGV-0086795_1	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0086795_1	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0086795_4	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0086795_4	PHROG	phrog_16427	DNA methyltransferase	other
UHGV-0086795_4	UniRef90	UniRef90_A0A3D5I9W8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0086795_4	eggNOG-mapper	657322.FPR_26610	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0086795_4	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0086795_4	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0086795_4	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0086795_5	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0086795_5	UniRef90	UniRef90_R6QWY1	28	NA
UHGV-0086795_5	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0086795_5	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0086795_6	PHROG	phrog_21034	NA	unknown function
UHGV-0086795_6	eggNOG-mapper	1221522.B723_18435	NA	NA
UHGV-0086795_8	PHROG	phrog_3136	NA	unknown function
UHGV-0086795_8	UniRef90	UniRef90_UPI001C26B029	ASCH domain-containing protein	NA
UHGV-0086795_8	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0086795_9	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0086795_9	UniRef90	UniRef90_R6QWY1	28	NA
UHGV-0086795_10	PHROG	phrog_3136	NA	unknown function
UHGV-0086795_10	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0086795_10	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0086795_10	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0086795_10	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0086795_13	PHROG	phrog_37916	NA	unknown function
UHGV-0086795_14	Pfam	PF04448	NA	DUF551
UHGV-0086795_15	Structural annotation	PF06289, COG1582	NA	NA
UHGV-0086795_19	Structural annotation	PF10013, NF001638, COG4338	NA	NA
UHGV-0086795_24	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0086795_24	UniRef90	UniRef90_UPI001C012D23	DNA-packaging protein	NA
UHGV-0086795_24	eggNOG-mapper	931276.Cspa_c57180	DNA-packaging protein gp3	NA
UHGV-0086795_24	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0086795_24	Structural annotation	PF16677	NA	NA
UHGV-0086795_28	eggNOG-mapper	397290.C810_01347	NA	NA
UHGV-0086795_28	Structural annotation	PF18267	NA	NA
UHGV-0086795_30	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0086795_30	PHROG	phrog_95	integrase	integration and excision
UHGV-0086795_30	UniRef90	UniRef90_UPI0018973F04	recombinase family protein	NA
UHGV-0086795_30	eggNOG-mapper	1203606.HMPREF1526_00251	Resolvase, N terminal domain	NA
UHGV-0086795_30	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0086795_30	Pfam	PF07508	Recombinase	Recombinase
UHGV-0086795_30	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0086795_30	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0086795_31	Structural annotation	NF009949	NA	NA
UHGV-0086795_32	Structural annotation	PF12869, MF_00720, NF040991, COG4085	NA	NA
UHGV-0086795_33	PHROG	phrog_1233	NA	unknown function
UHGV-0086795_33	eggNOG-mapper	1232443.BAIA02000078_gene33	NA	NA
UHGV-0086795_34	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0086795_34	UniRef90	UniRef90_A0A810QA10	Terminase	NA
UHGV-0086795_34	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0086795_34	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0086795_34	COG	COG5410	NA	NA
UHGV-0086795_34	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0086795_35	PHROG	phrog_64	portal protein	head and packaging
UHGV-0086795_35	UniRef90	UniRef90_UPI001C02F349	phage portal protein	NA
UHGV-0086795_35	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0086795_35	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0086795_35	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0086795_38	PHROG	phrog_247	major head protein	head and packaging
UHGV-0086795_38	UniRef90	UniRef90_A0A3D0LY55	Coat protein	NA
UHGV-0086795_38	eggNOG-mapper	1304866.K413DRAFT_3038	NA	NA
UHGV-0086795_38	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0086795_38	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0086795_40	UniRef90	UniRef90_UPI00164E20D5	phage head-tail connector protein	NA
UHGV-0086795_40	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0086795_40	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0086795_40	Structural annotation	TIGR01560	NA	NA
UHGV-0086795_41	eggNOG-mapper	1121866.AUGK01000003_gene1432	NA	NA
UHGV-0086795_42	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0086795_43	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0086795_44	PHROG	phrog_158	major tail protein	tail
UHGV-0086795_44	UniRef90	UniRef90_A0A1C6L0H9	Phage tail protein	NA
UHGV-0086795_44	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0086795_44	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0086795_45	UniRef90	UniRef90_A0A847YX95	NA	NA
UHGV-0086795_45	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0086795_45	Pfam	PF16478	NA	DUF5055
UHGV-0086795_45	Structural annotation	PF16478	NA	NA
UHGV-0086795_46	eggNOG-mapper	1211844.CBLM010000023_gene987	NA	NA
UHGV-0086795_47	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0086795_47	UniRef90	UniRef90_R6DYC9	Phage-related protein-like protein	NA
UHGV-0086795_47	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0086795_47	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0086795_48	PHROG	phrog_1194	NA	unknown function
UHGV-0086795_48	eggNOG-mapper	702450.CUW_0546	NA	NA
UHGV-0086795_48	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0086795_49	PHROG	phrog_6616	tail protein	tail
UHGV-0086795_49	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0086795_49	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0086795_50	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0086795_50	Structural annotation	NF041249, COG4379	NA	NA
UHGV-0086795_54	PHROG	phrog_38044	NA	unknown function
UHGV-0086795_54	eggNOG-mapper	1123263.AUKY01000051_gene1069	cellulase activity	NA
UHGV-0086795_54	COG	COG4926	Phage-related protein	NA
UHGV-0086795_55	PHROG	phrog_863	tail fiber assembly	tail
UHGV-0086795_55	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0086795_55	Structural annotation	PF14686, TIGR03000, COG2512	NA	NA
UHGV-0086795_59	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0086795_59	PHROG	phrog_894	endolysin	lysis
UHGV-0086795_59	UniRef90	UniRef90_R5EEQ7	Putative muramoyl-pentapeptide carboxypeptidase	NA
UHGV-0086795_59	eggNOG-mapper	931626.Awo_c26840	Peptidase M15	NA
UHGV-0086795_59	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0086795_59	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0086795_59	COG	COG3108	NA	NA
UHGV-0086795_59	Structural annotation	PF05951, PF01471, TIGR02869, COG3108	NA	NA
UHGV-0086795_60	PHROG	phrog_937	hemolysin	other
UHGV-0086795_60	eggNOG-mapper	1007096.BAGW01000017_gene814	NA	NA
UHGV-0086795_61	PHROG	phrog_918	NA	unknown function
UHGV-0086795_61	UniRef90	UniRef90_UPI00156D5D02	NA	NA
UHGV-0086795_61	eggNOG-mapper	411902.CLOBOL_05677	NA	NA
UHGV-0086795_61	Pfam	PF19791	NA	DUF6275
UHGV-0086795_61	Structural annotation	PF19791	NA	NA
UHGV-0086795_62	PHROG	phrog_10091	holin	lysis
UHGV-0086795_62	UniRef90	UniRef90_D7GNX3	Holin, phage phi LC3 family	NA
UHGV-0086795_62	eggNOG-mapper	97139.C824_05950	Bacteriophage holin	NA
UHGV-0086795_62	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0086795_62	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0086795_62	COG	COG5546	NA	NA
UHGV-0086795_62	Structural annotation	COG5546	NA	NA
UHGV-0086795_63	Structural annotation	PF01047, MF_00620, COG2771	NA	NA
UHGV-0086795_67	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0086795_67	PHROG	phrog_95	integrase	integration and excision
UHGV-0086795_67	UniRef90	UniRef90_UPI00164E9A6A	recombinase family protein	NA
UHGV-0086795_67	eggNOG-mapper	718252.FP2_29980	NA	NA
UHGV-0086795_67	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0086795_67	Pfam	PF07508	Recombinase	Recombinase
UHGV-0086795_67	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0086795_67	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0086795_67	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0086795_68	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0086795_71	UniRef90	UniRef90_A0A2N2CQC6	XRE family transcriptional regulator	NA
UHGV-0086795_71	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0086795_71	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0086795_73	Structural annotation	PF08962, PF07653, COG2388	NA	NA
UHGV-0086795_77	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0086795_77	UniRef90	UniRef90_UPI001D078B74	YqaJ viral recombinase family protein	NA
UHGV-0086795_77	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-0086795_77	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0086795_77	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0086795_77	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0086795_77	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0086795_78	Structural annotation	PF12844, MF_00535, NF041951, COG5499	NA	NA
UHGV-0086795_79	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0086795_79	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0086795_79	UniRef90	UniRef90_U2SBP2	Recombination and repair protein RecT	NA
UHGV-0086795_79	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0086795_79	Pfam	PF03837	RecT family	RecT
UHGV-0086795_79	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0086795_79	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0086795_79	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0086795_80	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0086795_80	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0086795_80	UniRef90	UniRef90_UPI001C118A83	single-stranded DNA-binding protein	NA
UHGV-0086795_80	eggNOG-mapper	693746.OBV_12860	Single-strand binding protein family	NA
UHGV-0086795_80	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0086795_80	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0086795_80	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0086795_80	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0086795_80	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0086795_81	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0086795_81	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0086795_81	UniRef90	UniRef90_A0A7X8IB41	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0086795_81	eggNOG-mapper	556263.FSEG_00477	NA	NA
UHGV-0086795_81	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0086795_82	PHROG	phrog_4973	NA	unknown function
UHGV-0086795_82	UniRef90	UniRef90_A0A3D3Y0P8	DNA-binding protein	NA
UHGV-0086795_82	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-0086795_82	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0086795_83	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-0086795_83	eggNOG-mapper	97138.C820_00626	NA	NA
UHGV-0086795_83	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0086795_83	COG	COG3935	DNA replication protein DnaD	NA