UHGV-0086796

Genome information

Genome length 37,762 bps

CDS count 49

Completeness 79.66% (medium-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-0086796
vOTU ID	vOTU-039355
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_179224
BioSample	SAMEA3449419
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.66% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.74
Jumbo phage	No

Genome content
Genome length	37,762 bps
GC content	42.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	94.22%
Average CDS length	729.98 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0086796_1	PHROG	phrog_19572	NA	unknown function
UHGV-0086796_1	eggNOG-mapper	411477.PARMER_03948	Phage tail protein	NA
UHGV-0086796_1	Pfam	PF14902	NA	DUF4494
UHGV-0086796_2	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0086796_2	eggNOG-mapper	457424.BFAG_02412	NA	NA
UHGV-0086796_4	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0086796_4	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0086796_4	UniRef90	UniRef90_UPI000E485340	HNH endonuclease	NA
UHGV-0086796_4	eggNOG-mapper	491915.Aflv_0659	HNH nucleases	NA
UHGV-0086796_4	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0086796_6	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0086796_6	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0086796_6	UniRef90	UniRef90_UPI000C1580E2	AAA family ATPase	NA
UHGV-0086796_6	eggNOG-mapper	1077285.AGDG01000032_gene4173	Participates in initiation and elongation during chromosome replication	NA
UHGV-0086796_6	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0086796_6	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0086796_6	COG	COG0305	Replicative DNA helicase	NA
UHGV-0086796_6	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0086796_8	KOfam	K17398	DNMT3A; DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37]	NA
UHGV-0086796_8	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0086796_8	UniRef90	UniRef90_A0A3R5X8M2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0086796_8	eggNOG-mapper	1122947.FR7_2498	Cytosine-specific methyltransferase	NA
UHGV-0086796_8	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0086796_8	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0086796_8	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0086796_8	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0086796_8	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0086796_9	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0086796_9	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0086796_9	UniRef90	UniRef90_A6LAB7	Methyltransferase	NA
UHGV-0086796_9	eggNOG-mapper	435591.BDI_0862	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0086796_9	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0086796_9	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0086796_9	COG	COG0338	DNA-adenine methylase	NA
UHGV-0086796_9	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0086796_11	PHROG	phrog_20542	NA	unknown function
UHGV-0086796_11	eggNOG-mapper	216591.BCAM1034	NA	NA
UHGV-0086796_12	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0086796_12	UniRef90	UniRef90_D0TA43	Radical SAM domain protein	NA
UHGV-0086796_12	eggNOG-mapper	411476.BACOVA_03916	radical SAM domain protein	NA
UHGV-0086796_12	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0086796_12	Structural annotation	MF_01865, TIGR00089, COG0621	NA	NA
UHGV-0086796_14	PHROG	phrog_8684	NA	unknown function
UHGV-0086796_14	UniRef90	UniRef90_A0A173VH02	YopX protein	NA
UHGV-0086796_14	eggNOG-mapper	742727.HMPREF9447_04806	YopX protein	NA
UHGV-0086796_14	Pfam	PF09643	YopX protein	YopX
UHGV-0086796_14	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0086796_14	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0086796_15	KOfam	K23398	TRIP4; activating signal cointegrator 1	NA
UHGV-0086796_15	PHROG	phrog_3193	NA	unknown function
UHGV-0086796_15	UniRef90	UniRef90_A0A173VGZ5	ASCH domain	NA
UHGV-0086796_15	eggNOG-mapper	1347393.HG726021_gene398	ASCH domain	NA
UHGV-0086796_15	Pfam	PF04266	ASCH domain	ASCH
UHGV-0086796_15	Structural annotation	COG4933	NA	NA
UHGV-0086796_16	UniRef90	UniRef90_UPI0018989DBE	NA	NA
UHGV-0086796_16	eggNOG-mapper	411901.BACCAC_01195	NA	NA
UHGV-0086796_16	Pfam	PF04448	NA	DUF551
UHGV-0086796_16	Structural annotation	NF037951	NA	NA
UHGV-0086796_18	PHROG	phrog_1071	DNA methyltransferase	other
UHGV-0086796_18	UniRef90	UniRef90_UPI0018981E25	N-6 DNA methylase	NA
UHGV-0086796_18	eggNOG-mapper	411476.BACOVA_03912	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0086796_18	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0086796_18	Structural annotation	TIGR02469, COG0827	NA	NA
UHGV-0086796_19	KOfam	K14059	int; integrase	NA
UHGV-0086796_19	PHROG	phrog_1	integrase	integration and excision
UHGV-0086796_19	UniRef90	UniRef90_A0A1Q6FDV8	Site-specific integrase	NA
UHGV-0086796_19	eggNOG-mapper	411476.BACOVA_03915	Belongs to the 'phage' integrase family	NA
UHGV-0086796_19	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0086796_19	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0086796_19	Structural annotation	PF00589, PF13102, MF_02055, NF040815, COG4974	NA	NA
UHGV-0086796_23	UniRef90	UniRef90_A0A7M1RVK1	Nuclear pore complex-like protein	NA
UHGV-0086796_24	UniRef90	UniRef90_UPI000E481466	NA	NA
UHGV-0086796_25	UniRef90	UniRef90_A0A496DZ79	Type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0086796_25	eggNOG-mapper	929556.Solca_2323	NA	NA
UHGV-0086796_25	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0086796_25	Structural annotation	PF21748, NF041951, COG1598	NA	NA
UHGV-0086796_26	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0086796_26	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0086796_26	UniRef90	UniRef90_A0A496E3H5	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0086796_26	eggNOG-mapper	118173.KB235914_gene2543	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0086796_26	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0086796_26	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0086796_27	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0086796_28	PHROG	phrog_26448	NA	unknown function
UHGV-0086796_28	eggNOG-mapper	1235803.C825_05324	NA	NA
UHGV-0086796_28	Pfam	PF20647	NA	DUF6808
UHGV-0086796_28	Structural annotation	PF20647	NA	NA
UHGV-0086796_29	PHROG	phrog_32732	NA	unknown function
UHGV-0086796_29	UniRef90	UniRef90_R6YL95	Conserved domain protein	NA
UHGV-0086796_29	eggNOG-mapper	762982.HMPREF9442_01182	NA	NA
UHGV-0086796_29	dbAPIS	APIS052	NA	NA
UHGV-0086796_29	Structural annotation	PF10458	NA	NA
UHGV-0086796_30	PHROG	phrog_873	endolysin	head and packaging
UHGV-0086796_30	UniRef90	UniRef90_A0A7K0H713	Structural protein P5	NA
UHGV-0086796_30	eggNOG-mapper	1235803.C825_05325	NA	NA
UHGV-0086796_31	PHROG	phrog_15037	NA	unknown function
UHGV-0086796_31	UniRef90	UniRef90_UPI0015E74944	phage holin family protein	NA
UHGV-0086796_31	eggNOG-mapper	742766.HMPREF9455_03105	NA	NA
UHGV-0086796_31	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0086796_34	eggNOG-mapper	272559.BF9343_2202	NA	NA
UHGV-0086796_34	Structural annotation	TIGR02588	NA	NA
UHGV-0086796_35	PHROG	phrog_11011	long tail fiber protein distal subunit	tail
UHGV-0086796_35	UniRef90	UniRef90_A0A4S2EEH8	Peptidase S74 domain-containing protein	NA
UHGV-0086796_35	eggNOG-mapper	1122931.AUAE01000036_gene1066	Chaperone of endosialidase	NA
UHGV-0086796_35	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0086796_35	COG	COG3210	Large exoprotein involved in heme utilization or adhesion	NA
UHGV-0086796_36	PHROG	phrog_30639	NA	unknown function
UHGV-0086796_36	eggNOG-mapper	411901.BACCAC_00723	NA	NA
UHGV-0086796_36	Structural annotation	PF14594, TIGR03361, COG4379	NA	NA
UHGV-0086796_37	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-0086796_37	UniRef90	UniRef90_UPI000EFBF3FC	phage tail tape measure protein	NA
UHGV-0086796_37	eggNOG-mapper	1197719.A464_1008	tail length tape measure	NA
UHGV-0086796_37	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0086796_37	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0086796_37	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0086796_37	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0086796_40	PHROG	phrog_1407	major tail protein	tail
UHGV-0086796_40	UniRef90	UniRef90_UPI0018AC0466	phage tail tube protein	NA
UHGV-0086796_40	eggNOG-mapper	908937.Prede_1348	Phage tail tube protein	NA
UHGV-0086796_40	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0086796_40	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0086796_41	UniRef90	UniRef90_UPI000F00A35C	NA	NA
UHGV-0086796_41	eggNOG-mapper	1347393.HG726020_gene891	NA	NA
UHGV-0086796_41	Pfam	PF11367	NA	DUF3168
UHGV-0086796_41	Structural annotation	PF11367, COG5003	NA	NA
UHGV-0086796_42	eggNOG-mapper	1347393.HG726020_gene892	NA	NA
UHGV-0086796_42	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0086796_43	PHROG	phrog_25	head closure Hc1	connector
UHGV-0086796_43	UniRef90	UniRef90_UPI000EFB77D5	phage head closure protein	NA
UHGV-0086796_43	eggNOG-mapper	1347393.HG726020_gene893	Phage head-tail joining protein	NA
UHGV-0086796_43	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0086796_43	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0086796_43	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0086796_44	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0086796_44	UniRef90	UniRef90_UPI0018ABD3B6	head-tail connector protein	NA
UHGV-0086796_44	eggNOG-mapper	1347393.HG726026_gene2615	Phage gp6-like head-tail connector protein	NA
UHGV-0086796_44	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0086796_44	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0086796_44	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0086796_45	PHROG	phrog_617	major head protein	head and packaging
UHGV-0086796_45	UniRef90	UniRef90_UPI0018AC12B5	phage major capsid protein	NA
UHGV-0086796_45	eggNOG-mapper	1347393.HG726026_gene2614	Phage capsid family	NA
UHGV-0086796_45	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0086796_45	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0086796_45	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0086796_45	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0086796_46	KOfam	K06904	NA	NA
UHGV-0086796_46	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0086796_46	UniRef90	UniRef90_UPI000F00EFDD	HK97 family phage prohead protease	NA
UHGV-0086796_46	eggNOG-mapper	908937.Prede_1354	Caudovirus prohead serine protease	NA
UHGV-0086796_46	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0086796_46	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0086796_46	COG	COG3740	Phage head maturation protease	NA
UHGV-0086796_46	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0086796_47	PHROG	phrog_12	portal protein	head and packaging
UHGV-0086796_47	UniRef90	UniRef90_UPI000EFC0CE6	phage portal protein	NA
UHGV-0086796_47	eggNOG-mapper	1347393.HG726026_gene2612	Phage portal protein	NA
UHGV-0086796_47	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0086796_47	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0086796_47	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0086796_47	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0086796_48	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0086796_48	UniRef90	UniRef90_UPI000EFAEBC4	terminase large subunit	NA
UHGV-0086796_48	eggNOG-mapper	1347393.HG726026_gene2611	Phage Terminase	NA
UHGV-0086796_48	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0086796_48	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0086796_48	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0086796_48	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0086796_49	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0086796_49	UniRef90	UniRef90_UPI0015FA7366	phage terminase small subunit P27 family	NA
UHGV-0086796_49	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0086796_49	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0086796_49	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0086796_49	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA