UHGV-0086800

Genome information

Genome length 26,744 bps

CDS count 39

Completeness 99.90% (high-quality)

geNomad score 0.9726

Prediction confidence Confident

Genome information
Genome ID	UHGV-0086800
vOTU ID	vOTU-014671
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_196979
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9726
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.65
Jumbo phage	No

Genome content
Genome length	26,744 bps
GC content	38.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	93.07%
Average CDS length	641.69 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0086800_1	KOfam	K07273	acm; lysozyme	NA
UHGV-0086800_1	PHROG	phrog_291	endolysin	lysis
UHGV-0086800_1	UniRef90	UniRef90_R6NXV5	Glycoside Hydrolase Family 25-like lysozyme/endolysin	NA
UHGV-0086800_1	eggNOG-mapper	246199.CUS_5914	hydrolase, family 25	NA
UHGV-0086800_1	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0086800_1	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0086800_1	Structural annotation	PF01183, TIGR04303, COG3757, COG5492	NA	NA
UHGV-0086800_2	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0086800_2	Structural annotation	PF10651, PF01095	NA	NA
UHGV-0086800_3	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0086800_3	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-0086800_3	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0086800_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0086800_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0086800_3	COG	COG4926	Phage-related protein	NA
UHGV-0086800_3	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0086800_4	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0086800_4	UniRef90	UniRef90_UPI00189E4294	phage tail family protein	NA
UHGV-0086800_4	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0086800_4	COG	COG4722	Phage-related protein YomH	NA
UHGV-0086800_4	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0086800_5	PHROG	phrog_23464	NA	unknown function
UHGV-0086800_5	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0086800_5	COG	COG5283	Phage-related tail protein	NA
UHGV-0086800_5	Structural annotation	COG3941	NA	NA
UHGV-0086800_8	PHROG	phrog_885	major tail protein	tail
UHGV-0086800_8	UniRef90	UniRef90_A0A3D3W9F4	CBM_X2 domain-containing protein	NA
UHGV-0086800_8	eggNOG-mapper	1321814.HMPREF9089_00935	NA	NA
UHGV-0086800_8	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0086800_9	Structural annotation	PF12691	NA	NA
UHGV-0086800_10	UniRef90	UniRef90_UPI001A9B6FBF	HK97 gp10 family phage protein	NA
UHGV-0086800_10	eggNOG-mapper	1414720.CBYM010000040_gene1650	NA	NA
UHGV-0086800_10	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0086800_10	Structural annotation	TIGR01725	NA	NA
UHGV-0086800_11	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0086800_11	UniRef90	UniRef90_A0A374MZF9	Phage head-tail adapter protein	NA
UHGV-0086800_11	eggNOG-mapper	768704.Desmer_4460	head-tail adaptor	NA
UHGV-0086800_11	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0086800_11	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0086800_11	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0086800_12	PHROG	phrog_5223	neck protein	connector
UHGV-0086800_12	UniRef90	UniRef90_UPI0019613678	head-tail connector protein	NA
UHGV-0086800_12	eggNOG-mapper	931626.Awo_c31020	NA	NA
UHGV-0086800_12	Structural annotation	TIGR01560	NA	NA
UHGV-0086800_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-0086800_13	UniRef90	UniRef90_A0A374N9V9	Phage major capsid protein	NA
UHGV-0086800_13	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0086800_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0086800_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0086800_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0086800_13	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0086800_14	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0086800_14	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0086800_14	UniRef90	UniRef90_A0A374NBM3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0086800_14	eggNOG-mapper	1203606.HMPREF1526_00979	Belongs to the peptidase S14 family	NA
UHGV-0086800_14	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0086800_14	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0086800_14	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0086800_15	PHROG	phrog_12	portal protein	head and packaging
UHGV-0086800_15	UniRef90	UniRef90_A0A374NAE1	Phage portal protein	NA
UHGV-0086800_15	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-0086800_15	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0086800_15	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0086800_15	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0086800_16	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0086800_16	UniRef90	UniRef90_A0A374NB45	Terminase large subunit	NA
UHGV-0086800_16	eggNOG-mapper	1203606.HMPREF1526_00981	Terminase	NA
UHGV-0086800_16	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0086800_16	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0086800_16	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0086800_16	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0086800_17	PHROG	phrog_1066	NA	unknown function
UHGV-0086800_17	eggNOG-mapper	1203606.HMPREF1526_00982	NA	NA
UHGV-0086800_18	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0086800_18	UniRef90	UniRef90_A0A374N9T6	HNH endonuclease	NA
UHGV-0086800_18	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-0086800_18	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0086800_18	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0086800_19	eggNOG-mapper	1304880.JAGB01000002_gene2225	NA	NA
UHGV-0086800_19	Structural annotation	TIGR01636	NA	NA
UHGV-0086800_20	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0086800_20	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0086800_20	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0086800_22	PHROG	phrog_824	NA	unknown function
UHGV-0086800_22	UniRef90	UniRef90_UPI00164A50A6	VRR-NUC domain-containing protein	NA
UHGV-0086800_22	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0086800_22	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0086800_22	Structural annotation	PF08774	NA	NA
UHGV-0086800_23	PHROG	phrog_34599	NA	unknown function
UHGV-0086800_23	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0086800_23	PADLOC	cluster2	Csf3_0_IV	CRISPR-CAS
UHGV-0086800_25	PHROG	phrog_15609	NA	unknown function
UHGV-0086800_25	UniRef90	UniRef90_A0A373SLQ6	NA	NA
UHGV-0086800_25	eggNOG-mapper	1514668.JOOA01000001_gene225	NA	NA
UHGV-0086800_25	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0086800_26	PHROG	phrog_8470	NA	unknown function
UHGV-0086800_26	UniRef90	UniRef90_A0A1M7BII1	PcfJ-like protein	NA
UHGV-0086800_26	eggNOG-mapper	1235790.C805_00306	PcfJ-like protein	NA
UHGV-0086800_26	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0086800_26	Structural annotation	PF14284	NA	NA
UHGV-0086800_27	PHROG	phrog_36399	NA	unknown function
UHGV-0086800_32	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0086800_32	Structural annotation	PF13443, MF_00535, NF041951, COG1396	NA	NA
UHGV-0086800_33	UniRef90	UniRef90_A0A374DVN3	DNA-binding protein	NA
UHGV-0086800_33	eggNOG-mapper	411902.CLOBOL_02554	NA	NA
UHGV-0086800_34	UniRef90	UniRef90_A0A373XLN2	XRE family transcriptional regulator	NA
UHGV-0086800_34	eggNOG-mapper	1123263.AUKY01000107_gene746	Peptidase S24-like	NA
UHGV-0086800_34	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0086800_34	Structural annotation	PF05339, NF007257, COG3655	NA	NA
UHGV-0086800_35	PHROG	phrog_1914	NA	unknown function
UHGV-0086800_35	UniRef90	UniRef90_UPI000E543E50	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0086800_35	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0086800_35	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0086800_35	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0086800_35	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0086800_36	UniRef90	UniRef90_A0A374DTF3	NA	NA
UHGV-0086800_37	KOfam	K14059	int; integrase	NA
UHGV-0086800_37	PHROG	phrog_1	integrase	integration and excision
UHGV-0086800_37	UniRef90	UniRef90_UPI000E4C7350	site-specific integrase	NA
UHGV-0086800_37	eggNOG-mapper	1469948.JPNB01000003_gene298	Belongs to the 'phage' integrase family	NA
UHGV-0086800_37	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0086800_37	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0086800_37	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0086800_37	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0086800_38	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0086800_38	PHROG	phrog_2825	polymerase	DNA, RNA and nucleotide metabolism
UHGV-0086800_38	UniRef90	UniRef90_A0A162J5U9	Reverse transcriptase domain-containing protein	NA
UHGV-0086800_38	eggNOG-mapper	537007.BLAHAN_06037	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0086800_38	PADLOC	retron_III-A1	NA	Retron
UHGV-0086800_38	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0086800_39	PHROG	phrog_24764	NA	unknown function
UHGV-0086800_39	UniRef90	UniRef90_A0A373KXV9	TnpV protein	NA
UHGV-0086800_39	eggNOG-mapper	511680.BUTYVIB_02251	NA	NA
UHGV-0086800_39	Pfam	PF14198	Transposon-encoded protein TnpV	TnpV
UHGV-0086800_39	Structural annotation	PF14198	NA	NA