UHGV-0086811

Genome information

Genome length 37,438 bps

CDS count 46

Completeness 87.17% (medium-quality)

geNomad score 0.9679

Prediction confidence Confident

Genome information
Genome ID	UHGV-0086811
vOTU ID	vOTU-031337
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_200457
BioSample	SAMEA3449321
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.17% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9679
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.72
Jumbo phage	No

Genome content
Genome length	37,438 bps
GC content	47.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	91.72%
Average CDS length	748.24 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0086811_1	UniRef90	UniRef90_F3QKR6	Transcriptional regulator, MerR family	NA
UHGV-0086811_1	eggNOG-mapper	469610.HMPREF0189_01072	PFAM regulatory protein, MerR	NA
UHGV-0086811_1	Pfam	PF13411	MerR HTH family regulatory protein	MerR_1
UHGV-0086811_1	COG	COG0789	DNA-binding transcriptional regulator, MerR family	NA
UHGV-0086811_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0086811_2	UniRef90	UniRef90_D9Y6B8	Arm-DNA-bind_3 domain-containing protein	NA
UHGV-0086811_2	eggNOG-mapper	469610.HMPREF0189_01073	DNA integration	NA
UHGV-0086811_2	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-0086811_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0086811_2	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0086811_3	KOfam	K07733	alpA; prophage regulatory protein	NA
UHGV-0086811_3	UniRef90	UniRef90_D9Y6B9	Transcriptional regulator, AlpA family	NA
UHGV-0086811_3	eggNOG-mapper	743974.MBO_05697	Transcriptional regulator	NA
UHGV-0086811_3	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0086811_3	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0086811_3	Structural annotation	PF05930, NF033499, COG3311	NA	NA
UHGV-0086811_4	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0086811_7	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0086811_7	UniRef90	UniRef90_A7B3R2	Siphovirus Gp157	NA
UHGV-0086811_7	eggNOG-mapper	742823.HMPREF9465_00905	Siphovirus Gp157	NA
UHGV-0086811_7	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0086811_7	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0086811_8	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0086811_8	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0086811_8	UniRef90	UniRef90_F3QNN6	Single-stranded DNA-binding protein	NA
UHGV-0086811_8	eggNOG-mapper	469610.HMPREF0189_01394	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0086811_8	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0086811_8	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0086811_8	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0086811_8	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0086811_8	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0086811_9	PHROG	phrog_1366	NA	unknown function
UHGV-0086811_9	UniRef90	UniRef90_K1JY20	AAA domain-containing protein	NA
UHGV-0086811_9	eggNOG-mapper	742823.HMPREF9465_00902	AAA domain	NA
UHGV-0086811_9	Pfam	PF13479	AAA domain	AAA_24
UHGV-0086811_9	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0086811_9	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0086811_13	PHROG	phrog_518	Rha-like transcriptional regulator	transcription regulation
UHGV-0086811_13	UniRef90	UniRef90_D9Y6K6	BRO family, N-terminal domain protein	NA
UHGV-0086811_13	eggNOG-mapper	469610.HMPREF0189_01161	BRO family, N-terminal domain	NA
UHGV-0086811_13	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0086811_13	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0086811_13	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0086811_13	COG	COG3617	Prophage antirepressor	NA
UHGV-0086811_13	Structural annotation	PF10552, PF02498, PF10548, COG3617	NA	NA
UHGV-0086811_14	UniRef90	UniRef90_A0A3D3SJ30	Transcriptional regulator	NA
UHGV-0086811_17	PHROG	phrog_21683	NA	unknown function
UHGV-0086811_17	UniRef90	UniRef90_A0A7T9JVJ2	SppA protein	NA
UHGV-0086811_17	eggNOG-mapper	335283.Neut_1485	Serine dehydrogenase proteinase	NA
UHGV-0086811_17	Pfam	PF01972	Serine dehydrogenase proteinase	SDH_sah
UHGV-0086811_17	COG	COG0616	Periplasmic serine protease, ClpP class	NA
UHGV-0086811_18	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0086811_18	UniRef90	UniRef90_R5EG02	Putative phage repressor	NA
UHGV-0086811_18	eggNOG-mapper	397945.Aave_3589	peptidase	NA
UHGV-0086811_18	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0086811_18	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0086811_18	Structural annotation	PF00717, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0086811_19	UniRef90	UniRef90_R5EI22	Predicted DNA-binding transcriptional regulator	NA
UHGV-0086811_19	eggNOG-mapper	1380387.JADM01000008_gene962	Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA
UHGV-0086811_19	Pfam	PF15943	Bacterial toxin YdaS	YdaS_toxin
UHGV-0086811_19	COG	COG4197	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily	NA
UHGV-0086811_19	Structural annotation	PF15943, NF041951, COG4197	NA	NA
UHGV-0086811_20	PHROG	phrog_1032	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0086811_20	UniRef90	UniRef90_UPI0012BB907D	helix-turn-helix domain-containing protein	NA
UHGV-0086811_20	eggNOG-mapper	762966.HMPREF9439_01017	NA	NA
UHGV-0086811_20	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0086811_20	Structural annotation	PF10007, MF_01909, NF040939, COG5529	NA	NA
UHGV-0086811_21	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0086811_21	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0086811_21	UniRef90	UniRef90_A0A5B3FNB0	DNA replication protein DnaC	NA
UHGV-0086811_21	eggNOG-mapper	762966.HMPREF9439_01018	IstB-like ATP binding protein	NA
UHGV-0086811_21	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0086811_21	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0086811_21	Structural annotation	PF01695, MF_01919, NF005931, COG1484	NA	NA
UHGV-0086811_23	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0086811_23	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0086811_23	UniRef90	UniRef90_UPI001BD5ADDD	endodeoxyribonuclease RusA	NA
UHGV-0086811_23	eggNOG-mapper	1439940.BAY1663_02332	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0086811_23	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0086811_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0086811_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0086811_24	UniRef90	UniRef90_C3X8X3	Putative phage terminase, large subunit, PBSX family	NA
UHGV-0086811_24	eggNOG-mapper	556268.OFAG_00922	Terminase-like family	NA
UHGV-0086811_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0086811_24	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0086811_25	PHROG	phrog_12082	portal protein	head and packaging
UHGV-0086811_25	eggNOG-mapper	204773.HEAR2283	NA	NA
UHGV-0086811_25	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0086811_26	UniRef90	UniRef90_A0A7W8M809	DNA-binding protein H-NS	NA
UHGV-0086811_26	eggNOG-mapper	1562701.BBOF01000081_gene250	NA	NA
UHGV-0086811_27	PHROG	phrog_9953	major head protein	head and packaging
UHGV-0086811_27	UniRef90	UniRef90_UPI000ADD8E8A	phage major capsid protein	NA
UHGV-0086811_27	eggNOG-mapper	1562701.BBOF01000081_gene253	NA	NA
UHGV-0086811_27	NCBIFam	NF033394.1	phage major capsid protein	NA
UHGV-0086811_27	Structural annotation	PF17236, MF_04133, NF033394, COG4653	NA	NA
UHGV-0086811_29	eggNOG-mapper	469610.HMPREF0189_01118	NA	NA
UHGV-0086811_31	UniRef90	UniRef90_A0A5B7ZLQ0	NA	NA
UHGV-0086811_31	Pfam	PF14301	NA	DUF4376
UHGV-0086811_31	Structural annotation	PF14301	NA	NA
UHGV-0086811_32	PHROG	phrog_3342	NA	unknown function
UHGV-0086811_32	UniRef90	UniRef90_A0A6L6YMG8	Pseudouridine synthase	NA
UHGV-0086811_32	eggNOG-mapper	563192.HMPREF0179_01734	NA	NA
UHGV-0086811_34	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0086811_34	PHROG	phrog_819	tail protein	tail
UHGV-0086811_34	UniRef90	UniRef90_UPI0019614AE9	collagen-like protein	NA
UHGV-0086811_34	eggNOG-mapper	556269.ACDQ01000006_gene1587	tail collar domain protein	NA
UHGV-0086811_34	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0086811_34	COG	COG4675	Phage tail collar domain	NA
UHGV-0086811_35	eggNOG-mapper	556268.OFAG_00941	NA	NA
UHGV-0086811_35	Structural annotation	PF20387, TIGR02215	NA	NA
UHGV-0086811_36	eggNOG-mapper	556269.ACDQ01000006_gene1592	NA	NA
UHGV-0086811_36	Structural annotation	PF11134, MF_01605, NF000022, NF033675, COG5276	NA	NA
UHGV-0086811_37	eggNOG-mapper	556269.ACDQ01000006_gene1593	NA	NA
UHGV-0086811_37	Structural annotation	PF02799, MF_02210, NF007530, COG3153	NA	NA
UHGV-0086811_38	eggNOG-mapper	556268.OFAG_00937	NA	NA
UHGV-0086811_39	PHROG	phrog_12032	short tail fiber protein	tail
UHGV-0086811_39	UniRef90	UniRef90_Q775C1	Bbp23	NA
UHGV-0086811_39	Structural annotation	PF11699, MF_01255, NF009806, COG4766	NA	NA
UHGV-0086811_40	eggNOG-mapper	204773.HEAR2269	NA	NA
UHGV-0086811_42	PHROG	phrog_5143	NA	unknown function
UHGV-0086811_42	eggNOG-mapper	1008459.TASI_0462	lyase activity	NA
UHGV-0086811_42	Pfam	PF18763	ddrB-like ParB superfamily domain	ddrB-ParB
UHGV-0086811_42	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0086811_42	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0086811_43	PHROG	phrog_785	holin	lysis
UHGV-0086811_43	eggNOG-mapper	742823.HMPREF9465_00919	LydA holin phage, holin superfamily III	NA
UHGV-0086811_43	Pfam	PF16083	LydA holin phage, holin superfamily III	Phage_holin_3_3
UHGV-0086811_44	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0086811_44	PHROG	phrog_7	endolysin	lysis
UHGV-0086811_44	UniRef90	UniRef90_D9Y906	Lysozyme	NA
UHGV-0086811_44	eggNOG-mapper	469610.HMPREF0189_02350	Phage lysozyme	NA
UHGV-0086811_44	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0086811_44	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0086811_44	HAMAP	MF_04110	Endolysin	NA
UHGV-0086811_44	Structural annotation	PF00959, MF_04110, COG3772	NA	NA