UHGV-0086855

Genome information

Genome length 12,563 bps

CDS count 15

Completeness 92.17% (high-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-0086855
vOTU ID	vOTU-061745
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_180379
BioSample	SAMEA3449351
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.17% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	4
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.51
Jumbo phage	No

Genome content
Genome length	12,563 bps
GC content	39.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	15
CDS density	91.40%
Average CDS length	767.20 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0086855_2	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0086855_2	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0086855_2	UniRef90	UniRef90_A0A2Z4GUK5	DNA polymerase	NA
UHGV-0086855_2	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0086855_2	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA
UHGV-0086855_5	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0086855_5	Structural annotation	PF17427	NA	NA
UHGV-0086855_6	PHROG	phrog_2150	terminase	head and packaging
UHGV-0086855_6	UniRef90	UniRef90_A0A843GFY2	Phage DNA encapsidation protein	NA
UHGV-0086855_6	eggNOG-mapper	1162304.I3PV13_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0086855_6	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0086855_6	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0086855_8	eggNOG-mapper	610130.Closa_0759	NA	NA
UHGV-0086855_10	PHROG	phrog_2038	upper collar connector	connector
UHGV-0086855_10	UniRef90	UniRef90_A0A2Z4GUB7	Upper collar protein	NA
UHGV-0086855_10	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-0086855_10	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0086855_10	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0086855_11	Structural annotation	PF20934	NA	NA
UHGV-0086855_12	Structural annotation	PF21703, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0086855_14	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0086855_14	PHROG	phrog_7	endolysin	lysis
UHGV-0086855_14	UniRef90	UniRef90_A0A1Y4IX13	Lysozyme	NA
UHGV-0086855_14	eggNOG-mapper	397291.C804_01109	Phage lysozyme	NA
UHGV-0086855_14	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0086855_14	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0086855_14	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0086855_14	HAMAP	MF_04110	Endolysin	NA
UHGV-0086855_14	Structural annotation	PF08230, PF00959, MF_04110, COG3772	NA	NA