UHGV-0086929

Genome information

Genome length 32,090 bps

CDS count 65

Completeness 55.12% (medium-quality)

geNomad score 0.9662

Prediction confidence Confident

Genome information
Genome ID	UHGV-0086929
vOTU ID	vOTU-039913
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_174303
BioSample	NA
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.12% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9662
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.37
Jumbo phage	No

Genome content
Genome length	32,090 bps
GC content	41.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	88.25%
Average CDS length	440.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0086929_2	UniRef90	UniRef90_A5ZQ25	Transposase	NA
UHGV-0086929_2	eggNOG-mapper	411468.CLOSCI_02457	NA	NA
UHGV-0086929_2	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0086929_2	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0086929_2	Structural annotation	PF01527, NF006928, COG2963	NA	NA
UHGV-0086929_3	Structural annotation	PF01375, NF002013, COG3502	NA	NA
UHGV-0086929_8	PHROG	phrog_23451	NA	unknown function
UHGV-0086929_8	UniRef90	UniRef90_A0A3R6W5Y4	DarA_C domain-containing protein	NA
UHGV-0086929_8	eggNOG-mapper	411459.RUMOBE_01101	NA	NA
UHGV-0086929_8	Pfam	PF18789	Defence against restriction A C-terminal	DarA_C
UHGV-0086929_8	Structural annotation	PF18789	NA	NA
UHGV-0086929_11	UniRef90	UniRef90_A0A1C5NSH2	Predicted transcriptional regulator	NA
UHGV-0086929_11	Pfam	PF21716	Probable addiction module antidote protein	dnstrm_HI1420
UHGV-0086929_11	Structural annotation	PF01381, TIGR03070, COG1476	NA	NA
UHGV-0086929_14	PHROG	phrog_6077	NA	unknown function
UHGV-0086929_14	eggNOG-mapper	411459.RUMOBE_01107	NA	NA
UHGV-0086929_15	PHROG	phrog_19458	primase	DNA, RNA and nucleotide metabolism
UHGV-0086929_15	UniRef90	UniRef90_UPI0010565CFE	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0086929_15	eggNOG-mapper	411459.RUMOBE_01108	NA	NA
UHGV-0086929_15	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-0086929_17	PHROG	phrog_19490	NA	unknown function
UHGV-0086929_17	UniRef90	UniRef90_UPI001C106E83	glutathione peroxidase	NA
UHGV-0086929_17	eggNOG-mapper	411459.RUMOBE_01110	NA	NA
UHGV-0086929_18	eggNOG-mapper	411459.RUMOBE_01111	NA	NA
UHGV-0086929_19	PHROG	phrog_31900	NA	unknown function
UHGV-0086929_21	PHROG	phrog_2889	NA	unknown function
UHGV-0086929_21	UniRef90	UniRef90_A5ZQ44	FGE-sulfatase domain-containing protein	NA
UHGV-0086929_21	eggNOG-mapper	411459.RUMOBE_01114	NA	NA
UHGV-0086929_21	COG	COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	NA
UHGV-0086929_25	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0086929_25	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0086929_25	UniRef90	UniRef90_A5ZQ48	Single-stranded DNA-binding protein	NA
UHGV-0086929_25	eggNOG-mapper	411459.RUMOBE_01118	NA	NA
UHGV-0086929_25	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0086929_25	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0086929_25	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0086929_25	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0086929_25	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0086929_26	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0086929_26	PHROG	phrog_95	integrase	integration and excision
UHGV-0086929_26	UniRef90	UniRef90_UPI0018A8B677	recombinase family protein	NA
UHGV-0086929_26	eggNOG-mapper	457412.RSAG_01189	resolvase	NA
UHGV-0086929_26	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0086929_26	Pfam	PF07508	Recombinase	Recombinase
UHGV-0086929_26	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0086929_26	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0086929_26	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0086929_28	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0086929_28	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0086929_28	UniRef90	UniRef90_UPI001D0DD847	helix-turn-helix domain-containing protein	NA
UHGV-0086929_28	eggNOG-mapper	411459.RUMOBE_01022	sequence-specific DNA binding	NA
UHGV-0086929_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0086929_28	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0086929_28	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0086929_29	UniRef90	UniRef90_UPI0018AA1EEF	helix-turn-helix domain-containing protein	NA
UHGV-0086929_29	eggNOG-mapper	457412.RSAG_01181	NA	NA
UHGV-0086929_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0086929_29	Structural annotation	PF12844, TIGR00673, COG3655	NA	NA
UHGV-0086929_30	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0086929_30	UniRef90	UniRef90_UPI0018C60BED	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0086929_30	eggNOG-mapper	742733.HMPREF9469_01848	NA	NA
UHGV-0086929_30	Pfam	PF12684	NA	DUF3799
UHGV-0086929_30	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0086929_30	Structural annotation	PF12684	NA	NA
UHGV-0086929_31	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0086929_31	UniRef90	UniRef90_A0A395V382	Phage_rep_org_N domain-containing protein	NA
UHGV-0086929_31	eggNOG-mapper	565664.EFXG_01794	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0086929_31	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0086929_31	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0086929_31	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0086929_32	PHROG	phrog_9804	NA	unknown function
UHGV-0086929_32	UniRef90	UniRef90_A0A395V4Y2	Inhibitor_G39P domain-containing protein	NA
UHGV-0086929_32	eggNOG-mapper	626523.GCWU000342_01038	Loader and inhibitor of phage G40P	NA
UHGV-0086929_32	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0086929_32	Structural annotation	PF11417	NA	NA
UHGV-0086929_33	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0086929_33	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0086929_33	UniRef90	UniRef90_A0A2K4ZGZ1	Endodeoxyribonuclease RusA	NA
UHGV-0086929_33	eggNOG-mapper	411459.RUMOBE_01038	COG COG4570 Holliday junction resolvase	NA
UHGV-0086929_33	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0086929_33	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0086929_33	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0086929_34	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0086929_34	eggNOG-mapper	761193.Runsl_0328	DNA binding	NA
UHGV-0086929_34	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0086929_35	KOfam	K19430	epsN; pyridoxal phosphate-dependent aminotransferase EpsN [EC:2.6.1.-]	NA
UHGV-0086929_35	PHROG	phrog_3139	aminotransferase	other
UHGV-0086929_35	UniRef90	UniRef90_UPI0018AA7491	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA
UHGV-0086929_35	eggNOG-mapper	315750.BPUM_3071	Belongs to the DegT DnrJ EryC1 family	NA
UHGV-0086929_35	Pfam	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family	DegT_DnrJ_EryC1
UHGV-0086929_35	COG	COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	NA
UHGV-0086929_35	Structural annotation	PF01041, MF_01167, TIGR04181, COG0399	NA	NA
UHGV-0086929_36	KOfam	K15894	pseB, wbjB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]	NA
UHGV-0086929_36	UniRef90	UniRef90_W3Z5I4	Polysaccharide biosynthesis domain protein (Fragment)	NA
UHGV-0086929_36	eggNOG-mapper	1294265.JCM21738_3874	GDP-mannose 4,6 dehydratase	NA
UHGV-0086929_36	Pfam	PF02719	Polysaccharide biosynthesis protein	Polysacc_synt_2
UHGV-0086929_36	COG	COG1086	NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC	NA
UHGV-0086929_38	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0086929_38	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0086929_38	UniRef90	UniRef90_A0A1C5PK20	Retron-type reverse transcriptase	NA
UHGV-0086929_38	eggNOG-mapper	1160721.RBI_I01568	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0086929_38	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0086929_38	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0086929_38	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0086929_38	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0086929_40	eggNOG-mapper	457412.RSAG_04673	NA	NA
UHGV-0086929_41	PHROG	phrog_37604	NA	unknown function
UHGV-0086929_41	eggNOG-mapper	457412.RSAG_01109	NA	NA
UHGV-0086929_42	PHROG	phrog_38777	NA	unknown function
UHGV-0086929_42	eggNOG-mapper	457412.RSAG_01108	NA	NA
UHGV-0086929_43	PHROG	phrog_34925	NA	unknown function
UHGV-0086929_43	UniRef90	UniRef90_A0A417JUQ4	Aminopeptidase	NA
UHGV-0086929_43	eggNOG-mapper	411459.RUMOBE_01083	NA	NA
UHGV-0086929_43	Structural annotation	PF06946	NA	NA
UHGV-0086929_44	PHROG	phrog_14030	NA	unknown function
UHGV-0086929_44	UniRef90	UniRef90_C6JAY8	NlpC/P60 domain-containing protein	NA
UHGV-0086929_44	eggNOG-mapper	411459.RUMOBE_01085	NA	NA
UHGV-0086929_44	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0086929_44	Structural annotation	PF05382, PF19087, NF033741, COG0791	NA	NA
UHGV-0086929_45	eggNOG-mapper	457398.HMPREF0326_03097	NA	NA
UHGV-0086929_50	PHROG	phrog_35453	NA	unknown function
UHGV-0086929_52	PHROG	phrog_4068	NA	unknown function
UHGV-0086929_52	eggNOG-mapper	178901.AmDm5_1358	NA	NA
UHGV-0086929_52	Structural annotation	PF06657	NA	NA
UHGV-0086929_54	Structural annotation	PF07202	NA	NA
UHGV-0086929_56	PHROG	phrog_4173	NA	unknown function
UHGV-0086929_56	UniRef90	UniRef90_UPI001D061918	zinc ribbon domain-containing protein	NA
UHGV-0086929_56	eggNOG-mapper	1203606.HMPREF1526_00223	NA	NA
UHGV-0086929_57	UniRef90	UniRef90_UPI0018A8F43C	helix-turn-helix domain-containing protein	NA
UHGV-0086929_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0086929_58	eggNOG-mapper	397290.C810_01713	NA	NA
UHGV-0086929_59	Structural annotation	PF13069	NA	NA
UHGV-0086929_60	UniRef90	UniRef90_UPI00156F8596	NA	NA
UHGV-0086929_60	eggNOG-mapper	1235802.C823_05491	NA	NA
UHGV-0086929_60	Pfam	PF14190	NA	DUF4313
UHGV-0086929_60	Structural annotation	PF14190	NA	NA
UHGV-0086929_61	PHROG	phrog_19458	primase	DNA, RNA and nucleotide metabolism
UHGV-0086929_61	eggNOG-mapper	411459.RUMOBE_01108	NA	NA
UHGV-0086929_61	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-0086929_63	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0086929_63	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0086929_63	UniRef90	UniRef90_R7EEI8	Single-stranded DNA-binding protein	NA
UHGV-0086929_63	eggNOG-mapper	622312.ROSEINA2194_04345	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0086929_63	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0086929_63	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0086929_63	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0086929_63	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0086929_63	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0086929_64	eggNOG-mapper	411459.RUMOBE_01120	NA	NA
UHGV-0086929_64	Pfam	PF20190	NA	DUF6553
UHGV-0086929_65	KOfam	K06972	PITRM1, PreP, CYM1; presequence protease [EC:3.4.24.-]	NA
UHGV-0086929_65	UniRef90	UniRef90_J9CE71	Peptidase, M16 family (Fragment)	NA
UHGV-0086929_65	eggNOG-mapper	411459.RUMOBE_01121	NA	NA
UHGV-0086929_65	Pfam	PF00675	Insulinase (Peptidase family M16)	Peptidase_M16
UHGV-0086929_65	COG	COG1026	Zn-dependent peptidase, M16 (insulinase) family	NA