UHGV-0086971

Genome information

Genome length 30,207 bps

CDS count 57

Completeness 54.25% (medium-quality)

geNomad score 0.9559

Prediction confidence Confident

Genome information
Genome ID	UHGV-0086971
vOTU ID	vOTU-026406
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_177303
BioSample	SAMEA3449180
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.25% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9559
Virus hallmark genes (geNomad)	1
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.8
Jumbo phage	No

Genome content
Genome length	30,207 bps
GC content	43.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	83.30%
Average CDS length	444.53 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0086971_1	PHROG	phrog_1501	NA	unknown function
UHGV-0086971_1	UniRef90	UniRef90_A0A3D6ECQ2	NA	NA
UHGV-0086971_1	eggNOG-mapper	1121097.JCM15093_2704	NA	NA
UHGV-0086971_1	Pfam	PF18925	NA	DUF5675
UHGV-0086971_1	Structural annotation	PF18925	NA	NA
UHGV-0086971_2	eggNOG-mapper	470145.BACCOP_01117	NA	NA
UHGV-0086971_3	UniRef90	UniRef90_A0A8D9UI10	Chromosomal replication initiator protein	NA
UHGV-0086971_3	eggNOG-mapper	411901.BACCAC_01113	Bacterial dnaA protein helix-turn-helix	NA
UHGV-0086971_3	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0086971_4	PHROG	phrog_16490	NA	unknown function
UHGV-0086971_4	eggNOG-mapper	742725.HMPREF9450_02105	NA	NA
UHGV-0086971_5	PHROG	phrog_31654	NA	unknown function
UHGV-0086971_5	eggNOG-mapper	742725.HMPREF9450_02106	NA	NA
UHGV-0086971_6	PHROG	phrog_28898	NA	unknown function
UHGV-0086971_6	eggNOG-mapper	411901.BACCAC_01110	NA	NA
UHGV-0086971_6	Structural annotation	PF10781	NA	NA
UHGV-0086971_8	PHROG	phrog_38431	NA	unknown function
UHGV-0086971_8	UniRef90	UniRef90_F3QSP5	Conserved domain protein	NA
UHGV-0086971_8	eggNOG-mapper	762968.HMPREF9441_00551	NA	NA
UHGV-0086971_11	PHROG	phrog_15610	protease	other
UHGV-0086971_11	UniRef90	UniRef90_A0A096AAQ0	Membrane protein	NA
UHGV-0086971_11	eggNOG-mapper	1347393.HG726024_gene2889	NA	NA
UHGV-0086971_12	PHROG	phrog_11126	NA	unknown function
UHGV-0086971_12	UniRef90	UniRef90_A0A8B2D461	NA	NA
UHGV-0086971_12	eggNOG-mapper	1122985.HMPREF1991_02868	nuclease activity	NA
UHGV-0086971_12	Pfam	PF14367	NA	DUF4411
UHGV-0086971_12	COG	COG1487	Ribonuclease/mRNA interferase VapC, contains PIN domain	NA
UHGV-0086971_12	Structural annotation	PF14367, MF_00265, NF010285, COG3744	NA	NA
UHGV-0086971_13	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0086971_13	UniRef90	UniRef90_A0A1Y4JMN9	HTH cro/C1-type domain-containing protein	NA
UHGV-0086971_13	eggNOG-mapper	619693.HMPREF6745_1205	IrrE N-terminal-like domain	NA
UHGV-0086971_13	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0086971_13	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0086971_13	Structural annotation	PF01381, PF06114, MF_00535, NF041951, COG2856, COG1476	NA	NA
UHGV-0086971_14	Structural annotation	PF16670	NA	NA
UHGV-0086971_16	PHROG	phrog_874	NA	unknown function
UHGV-0086971_16	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-0086971_16	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0086971_17	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0086971_17	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0086971_17	UniRef90	UniRef90_A0A3D6EAT5	Methyltransferase	NA
UHGV-0086971_17	eggNOG-mapper	1268240.ATFI01000007_gene432	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0086971_17	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0086971_17	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0086971_17	COG	COG0863	DNA modification methylase	NA
UHGV-0086971_17	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0086971_20	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0086971_20	UniRef90	UniRef90_UPI0011DCE920	NA	NA
UHGV-0086971_20	eggNOG-mapper	762982.HMPREF9442_01214	NA	NA
UHGV-0086971_20	Pfam	PF14359	NA	DUF4406
UHGV-0086971_20	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0086971_21	PHROG	phrog_1365	NA	unknown function
UHGV-0086971_22	PHROG	phrog_28300	NA	unknown function
UHGV-0086971_22	eggNOG-mapper	483215.BACFIN_06266	NA	NA
UHGV-0086971_22	Structural annotation	PF07653	NA	NA
UHGV-0086971_23	PHROG	phrog_8684	NA	unknown function
UHGV-0086971_23	UniRef90	UniRef90_A0A3D6E9B9	YopX domain-containing protein	NA
UHGV-0086971_23	eggNOG-mapper	762968.HMPREF9441_00543	YopX protein	NA
UHGV-0086971_23	Pfam	PF09643	YopX protein	YopX
UHGV-0086971_23	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0086971_23	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0086971_25	PHROG	phrog_17560	NA	unknown function
UHGV-0086971_25	UniRef90	UniRef90_A5ZE38	Conserved domain protein	NA
UHGV-0086971_25	eggNOG-mapper	411901.BACCAC_01149	NA	NA
UHGV-0086971_25	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0086971_29	PHROG	phrog_32914	NA	unknown function
UHGV-0086971_30	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0086971_30	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0086971_30	UniRef90	UniRef90_A0A396F778	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0086971_30	eggNOG-mapper	1121098.HMPREF1534_01084	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0086971_30	PADLOC	SspD_00001	SspD	SSP
UHGV-0086971_30	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0086971_30	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0086971_30	Structural annotation	PF01507, MF_00063, NF002537, COG0175	NA	NA
UHGV-0086971_31	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0086971_31	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0086971_31	UniRef90	UniRef90_A0A3D6E8X7	DNA helicase	NA
UHGV-0086971_31	eggNOG-mapper	411901.BACCAC_00472	Participates in initiation and elongation during chromosome replication	NA
UHGV-0086971_31	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0086971_31	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0086971_31	COG	COG0305	Replicative DNA helicase	NA
UHGV-0086971_31	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0086971_32	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0086971_32	UniRef90	UniRef90_A0A3D6EA43	NA	NA
UHGV-0086971_32	eggNOG-mapper	511437.Lbuc_1442	NA	NA
UHGV-0086971_32	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0086971_32	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0086971_32	Structural annotation	PF14297, TIGR01714, COG3756	NA	NA
UHGV-0086971_34	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0086971_34	eggNOG-mapper	1122971.BAME01000006_gene913	NA	NA
UHGV-0086971_34	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0086971_36	PHROG	phrog_19572	NA	unknown function
UHGV-0086971_36	UniRef90	UniRef90_A0A5M5M9N2	NA	NA
UHGV-0086971_36	eggNOG-mapper	763034.HMPREF9446_00684	COG NOG14445 non supervised orthologous group	NA
UHGV-0086971_36	Pfam	PF14902	NA	DUF4494
UHGV-0086971_36	Structural annotation	PF14902	NA	NA
UHGV-0086971_37	PHROG	phrog_4932	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0086971_37	UniRef90	UniRef90_A0A3R6HN06	NA	NA
UHGV-0086971_37	eggNOG-mapper	999419.HMPREF1077_02019	NA	NA
UHGV-0086971_37	Pfam	PF11325	NA	DUF3127
UHGV-0086971_37	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0086971_37	Structural annotation	PF11325, MF_00720, TIGR04418, COG2965	NA	NA
UHGV-0086971_38	eggNOG-mapper	411477.PARMER_02079	NA	NA
UHGV-0086971_38	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0086971_40	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0086971_40	UniRef90	UniRef90_A0A5S5D227	ERF superfamily protein	NA
UHGV-0086971_40	eggNOG-mapper	1327970.R9ZVT8_9CAUD	ERF superfamily	NA
UHGV-0086971_40	Pfam	PF04404	ERF superfamily	ERF
UHGV-0086971_40	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0086971_43	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0086971_43	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0086971_43	UniRef90	UniRef90_UPI000C03D313	helix-turn-helix transcriptional regulator	NA
UHGV-0086971_43	eggNOG-mapper	449673.BACSTE_00251	NA	NA
UHGV-0086971_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0086971_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0086971_43	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0086971_52	UniRef90	UniRef90_A0A137SSE2	DNA-binding helix-turn-helix protein	NA
UHGV-0086971_52	eggNOG-mapper	1287476.HMPREF1651_10195	Helix-turn-helix XRE-family like proteins	NA
UHGV-0086971_52	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0086971_52	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0086971_52	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0086971_53	PHROG	phrog_1762	NA	unknown function
UHGV-0086971_53	eggNOG-mapper	272562.CA_C2919	NA	NA
UHGV-0086971_53	Pfam	PF11185	NA	DUF2971
UHGV-0086971_53	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-0086971_54	Pfam	PF16872	Putative phage abortive infection protein	putAbiC
UHGV-0086971_55	eggNOG-mapper	1454202.PPBDW_130200___1	NA	NA
UHGV-0086971_57	eggNOG-mapper	1121100.JCM6294_554	NA	NA