UHGV-0087039

Genome information

Genome length 46,167 bps

CDS count 77

Completeness 100.00% (complete)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-0087039
vOTU ID	vOTU-004583
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_197372
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.62
Jumbo phage	No

Genome content
Genome length	46,167 bps
GC content	40.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	77
CDS density	91.56%
Average CDS length	552.55 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0087039_6	eggNOG-mapper	411459.RUMOBE_01385	NA	NA
UHGV-0087039_6	AcrCatalog	cluster_11670	NA	NA
UHGV-0087039_7	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0087039_7	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0087039_7	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0087039_7	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0087039_7	Structural annotation	PF16677	NA	NA
UHGV-0087039_8	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0087039_8	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0087039_8	UniRef90	UniRef90_A0A395X9V4	PBSX family phage terminase large subunit	NA
UHGV-0087039_8	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0087039_8	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0087039_8	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0087039_8	COG	COG1783	Phage terminase large subunit	NA
UHGV-0087039_8	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0087039_10	PHROG	phrog_533	portal protein	head and packaging
UHGV-0087039_10	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0087039_10	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0087039_10	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0087039_11	PHROG	phrog_3180	Arc-like repressor	transcription regulation
UHGV-0087039_11	UniRef90	UniRef90_A0A5J5HFE5	Ribbon-helix-helix domain-containing protein	NA
UHGV-0087039_11	Structural annotation	PF19891, NF041793, COG4877	NA	NA
UHGV-0087039_12	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0087039_12	UniRef90	UniRef90_A0A6L8SWJ4	AP2 domain-containing protein	NA
UHGV-0087039_12	eggNOG-mapper	756499.Desde_1078	NA	NA
UHGV-0087039_12	Structural annotation	PF10729, MF_01580, NF007510	NA	NA
UHGV-0087039_14	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0087039_14	UniRef90	UniRef90_A0A395X791	Phage capsid protein	NA
UHGV-0087039_14	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0087039_14	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0087039_14	COG	COG2369	NA	NA
UHGV-0087039_14	Structural annotation	PF06152	NA	NA
UHGV-0087039_15	PHROG	phrog_3754	NA	unknown function
UHGV-0087039_15	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0087039_16	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0087039_16	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0087039_17	PHROG	phrog_21718	NA	unknown function
UHGV-0087039_17	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0087039_18	PHROG	phrog_22984	NA	unknown function
UHGV-0087039_19	PHROG	phrog_16490	NA	unknown function
UHGV-0087039_19	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0087039_20	PHROG	phrog_20016	NA	unknown function
UHGV-0087039_20	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0087039_20	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0087039_20	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0087039_21	PHROG	phrog_28802	NA	unknown function
UHGV-0087039_21	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0087039_23	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0087039_23	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0087039_23	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0087039_23	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0087039_23	Structural annotation	PF06810	NA	NA
UHGV-0087039_24	PHROG	phrog_544	major head protein	head and packaging
UHGV-0087039_24	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0087039_24	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0087039_24	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0087039_24	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0087039_25	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0087039_25	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0087039_26	PHROG	phrog_774	NA	unknown function
UHGV-0087039_26	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0087039_27	PHROG	phrog_1129	holin	lysis
UHGV-0087039_27	UniRef90	UniRef90_A0A395X7B2	Enolase	NA
UHGV-0087039_27	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0087039_27	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0087039_27	Structural annotation	PF06946	NA	NA
UHGV-0087039_28	PHROG	phrog_3366	NA	unknown function
UHGV-0087039_28	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0087039_28	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0087039_29	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0087039_29	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0087039_29	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0087039_29	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0087039_29	Structural annotation	PF11114	NA	NA
UHGV-0087039_30	PHROG	phrog_3266	tail completion	connector
UHGV-0087039_30	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0087039_30	Structural annotation	PF12691	NA	NA
UHGV-0087039_31	PHROG	phrog_3099	NA	unknown function
UHGV-0087039_31	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0087039_31	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0087039_32	PHROG	phrog_11299	NA	unknown function
UHGV-0087039_32	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0087039_32	Structural annotation	PF10666	NA	NA
UHGV-0087039_33	PHROG	phrog_706	NA	unknown function
UHGV-0087039_33	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0087039_33	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0087039_33	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0087039_33	Structural annotation	PF06854	NA	NA
UHGV-0087039_34	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0087039_34	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-0087039_34	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0087039_34	COG	COG1511	NA	NA
UHGV-0087039_34	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0087039_35	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0087039_36	KOfam	K16629	COL21A; collagen type XXI alpha	NA
UHGV-0087039_36	PHROG	phrog_6616	tail protein	tail
UHGV-0087039_36	UniRef90	UniRef90_A0A2V2D052	Peptidase S74 domain-containing protein	NA
UHGV-0087039_36	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0087039_36	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0087039_36	COG	COG4926	Phage-related protein	NA
UHGV-0087039_36	Structural annotation	PF05113, PF01835, PF03921, NF033848, COG3500	NA	NA
UHGV-0087039_39	PHROG	phrog_9589	endolysin	lysis
UHGV-0087039_39	UniRef90	UniRef90_UPI0009315CF1	SH3 domain-containing protein	NA
UHGV-0087039_39	eggNOG-mapper	476272.RUMHYD_03304	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-0087039_39	Pfam	PF05257	CHAP domain	CHAP
UHGV-0087039_39	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0087039_39	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0087039_39	Structural annotation	PF08239, PF09953, NF040678, COG3942, COG4991	NA	NA
UHGV-0087039_40	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0087039_40	PHROG	phrog_95	integrase	integration and excision
UHGV-0087039_40	UniRef90	UniRef90_A0A2V2D7K6	Recombinase family protein	NA
UHGV-0087039_40	eggNOG-mapper	33035.JPJF01000109_gene439	Resolvase, N terminal domain	NA
UHGV-0087039_40	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0087039_40	Pfam	PF07508	Recombinase	Recombinase
UHGV-0087039_40	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0087039_40	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0087039_40	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0087039_41	PHROG	phrog_8545	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UHGV-0087039_41	UniRef90	UniRef90_UPI001C0EAFDF	OB-fold putative lipoprotein	NA
UHGV-0087039_41	eggNOG-mapper	1304866.K413DRAFT_0836	tRNA_anti-like	NA
UHGV-0087039_41	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0087039_41	Structural annotation	PF12869, PF10571, MF_01959, TIGR03943, COG5235	NA	NA
UHGV-0087039_42	UniRef90	UniRef90_A0A416L831	Toxin-antitoxin system HicB family antitoxin	NA
UHGV-0087039_42	Structural annotation	PF16777, NF010256, COG4877	NA	NA
UHGV-0087039_43	UniRef90	UniRef90_A0A2V2D017	CopG family transcriptional regulator	NA
UHGV-0087039_44	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0087039_44	UniRef90	UniRef90_UPI001C016064	ORF6C domain-containing protein	NA
UHGV-0087039_44	eggNOG-mapper	1304866.K413DRAFT_3008	Phage regulatory protein	NA
UHGV-0087039_44	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0087039_44	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0087039_44	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0087039_44	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0087039_47	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0087039_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0087039_47	UniRef90	UniRef90_A0A395X7H2	XRE family transcriptional regulator	NA
UHGV-0087039_47	eggNOG-mapper	397288.C806_00131	Transcriptional	NA
UHGV-0087039_47	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0087039_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087039_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0087039_47	Structural annotation	PF01381, MF_02017, NF041951, COG3655	NA	NA
UHGV-0087039_48	UniRef90	UniRef90_A0A395X814	XRE family transcriptional regulator	NA
UHGV-0087039_48	eggNOG-mapper	1121289.JHVL01000079_gene1187	Helix-turn-helix XRE-family like proteins	NA
UHGV-0087039_48	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0087039_48	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0087039_57	Structural annotation	NF011879	NA	NA
UHGV-0087039_58	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0087039_59	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0087039_59	UniRef90	UniRef90_UPI0015715A02	AAA family ATPase	NA
UHGV-0087039_59	eggNOG-mapper	1256908.HMPREF0373_00658	AAA domain	NA
UHGV-0087039_59	Structural annotation	PF08423, TIGR01618	NA	NA
UHGV-0087039_60	PHROG	phrog_18107	NA	unknown function
UHGV-0087039_60	eggNOG-mapper	397290.C810_05167	NA	NA
UHGV-0087039_60	Structural annotation	PF05037	NA	NA
UHGV-0087039_61	PHROG	phrog_28936	NA	unknown function
UHGV-0087039_61	eggNOG-mapper	573061.Clocel_3563	NA	NA
UHGV-0087039_61	Structural annotation	PF11645, MF_01490, NF040854	NA	NA
UHGV-0087039_62	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0087039_62	UniRef90	UniRef90_R9KEE1	ERCC4 domain-containing protein	NA
UHGV-0087039_62	eggNOG-mapper	397290.C810_05169	ERCC4 domain	NA
UHGV-0087039_62	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0087039_62	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0087039_63	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0087039_63	PHROG	phrog_11992	NA	unknown function
UHGV-0087039_63	UniRef90	UniRef90_A0A3A6GSV7	DNA primase	NA
UHGV-0087039_63	eggNOG-mapper	411460.RUMTOR_02069	CHC2 zinc finger	NA
UHGV-0087039_63	PADLOC	drt-UG29	DRT	DRT
UHGV-0087039_63	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0087039_63	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0087039_63	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0087039_64	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0087039_64	UniRef90	UniRef90_A0A3A6GQS5	NA	NA
UHGV-0087039_64	eggNOG-mapper	411460.RUMTOR_02070	NA	NA
UHGV-0087039_64	Pfam	PF06048	NA	DUF927
UHGV-0087039_64	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0087039_64	COG	COG5519	NA	NA
UHGV-0087039_64	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0087039_65	KOfam	K15255	PIF1; ATP-dependent DNA helicase PIF1 [EC:5.6.2.3]	NA
UHGV-0087039_65	PHROG	phrog_325	Dda-like helicase	DNA, RNA and nucleotide metabolism
UHGV-0087039_65	UniRef90	UniRef90_A0A2V2D011	AAA domain-containing protein	NA
UHGV-0087039_65	eggNOG-mapper	1121333.JMLH01000003_gene334	PIF1-like helicase	NA
UHGV-0087039_65	PADLOC	cluster10	RecD_0_IVD	CRISPR-CAS
UHGV-0087039_65	Pfam	PF05970	PIF1-like helicase	PIF1
UHGV-0087039_65	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0087039_65	Structural annotation	PF05970, PF16277, MF_03176, TIGR01448, COG0507	NA	NA
UHGV-0087039_67	PHROG	phrog_3502	NA	unknown function
UHGV-0087039_67	UniRef90	UniRef90_A0A412EKY9	Winged helix-turn-helix transcriptional regulator	NA
UHGV-0087039_67	eggNOG-mapper	525256.HMPREF0091_10731	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0087039_67	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0087039_67	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0087039_67	Structural annotation	PF01726, MF_00732, TIGR00738, COG0640	NA	NA
UHGV-0087039_68	Structural annotation	PF04936	NA	NA
UHGV-0087039_70	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0087039_70	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0087039_70	UniRef90	UniRef90_A0A1C5MBD4	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0087039_70	eggNOG-mapper	1499683.CCFF01000017_gene2594	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-0087039_70	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0087039_70	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0087039_70	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0087039_70	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0087039_70	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0087039_71	eggNOG-mapper	397290.C810_05186	NA	NA
UHGV-0087039_72	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0087039_72	UniRef90	UniRef90_UPI001C0F2DCC	Lar family restriction alleviation protein	NA
UHGV-0087039_72	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0087039_74	Structural annotation	PF17888	NA	NA