UHGV-0087043

Genome information

Genome length 33,889 bps

CDS count 55

Completeness 100.00% (complete)

geNomad score 0.9664

Prediction confidence Confident

Genome information
Genome ID	UHGV-0087043
vOTU ID	vOTU-045251
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_187648
BioSample	SAMEA3449274
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9664
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.56
Jumbo phage	No

Genome content
Genome length	33,889 bps
GC content	54.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	90.84%
Average CDS length	562.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0087043_1	PHROG	phrog_4068	NA	unknown function
UHGV-0087043_2	PHROG	phrog_31229	NA	unknown function
UHGV-0087043_2	UniRef90	UniRef90_A0A0C1RAJ6	Putative membrane protein	NA
UHGV-0087043_2	eggNOG-mapper	1280692.AUJL01000009_gene2925	NA	NA
UHGV-0087043_3	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0087043_3	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0087043_3	UniRef90	UniRef90_A0A845SYJ8	Methyltransferase	NA
UHGV-0087043_3	eggNOG-mapper	1378168.N510_03208	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0087043_3	PADLOC	MTase_II_00107	Type II methyltransferase	RM
UHGV-0087043_3	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0087043_3	COG	COG0863	DNA modification methylase	NA
UHGV-0087043_3	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0087043_5	PHROG	phrog_1129	holin	lysis
UHGV-0087043_5	UniRef90	UniRef90_A0A7C6NZR5	Holin	NA
UHGV-0087043_5	eggNOG-mapper	428127.EUBDOL_01567	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0087043_5	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0087043_5	Structural annotation	PF06946	NA	NA
UHGV-0087043_6	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0087043_6	PHROG	phrog_15001	endolysin	lysis
UHGV-0087043_6	UniRef90	UniRef90_R7IDH5	N-acetylmuramoyl-l-alanine amidase domain protein	NA
UHGV-0087043_6	eggNOG-mapper	1347392.CCEZ01000015_gene2823	Sporulation related domain	NA
UHGV-0087043_6	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0087043_6	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0087043_6	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0087043_6	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0087043_7	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0087043_7	Structural annotation	PF07141	NA	NA
UHGV-0087043_9	eggNOG-mapper	1499680.CCFE01000031_gene3745	NA	NA
UHGV-0087043_10	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0087043_10	UniRef90	UniRef90_UPI001D11694A	HNH endonuclease	NA
UHGV-0087043_10	eggNOG-mapper	1123288.SOV_2c03680	adenylate kinase activity	NA
UHGV-0087043_10	Pfam	PF13671	AAA domain	AAA_33
UHGV-0087043_10	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0087043_10	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0087043_11	Structural annotation	PF10651	NA	NA
UHGV-0087043_12	PHROG	phrog_13589	NA	unknown function
UHGV-0087043_12	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-0087043_12	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0087043_15	PHROG	phrog_1066	NA	unknown function
UHGV-0087043_15	eggNOG-mapper	642492.Clole_1854	NA	NA
UHGV-0087043_16	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0087043_16	UniRef90	UniRef90_UPI001D10BBFC	terminase large subunit	NA
UHGV-0087043_16	eggNOG-mapper	1211817.CCAT010000007_gene1040	Terminase	NA
UHGV-0087043_16	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0087043_16	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0087043_16	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0087043_16	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0087043_17	PHROG	phrog_12	portal protein	head and packaging
UHGV-0087043_17	UniRef90	UniRef90_UPI00156EE181	phage portal protein	NA
UHGV-0087043_17	eggNOG-mapper	293826.Amet_2412	Portal protein	NA
UHGV-0087043_17	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0087043_17	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0087043_17	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0087043_18	KOfam	K06904	NA	NA
UHGV-0087043_18	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0087043_18	UniRef90	UniRef90_R6YQV2	Putative phage prohead protease	NA
UHGV-0087043_18	eggNOG-mapper	1123263.AUKY01000046_gene468	Phage prohead protease, HK97 family	NA
UHGV-0087043_18	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0087043_18	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0087043_18	COG	COG3740	Phage head maturation protease	NA
UHGV-0087043_18	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0087043_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-0087043_19	UniRef90	UniRef90_A0A1C5W5F9	Phage major capsid protein, HK97 family	NA
UHGV-0087043_19	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0087043_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0087043_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0087043_19	Structural annotation	PF05065, PF09032, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0087043_20	UniRef90	UniRef90_UPI001D07D95D	phage head-tail connector protein	NA
UHGV-0087043_20	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0087043_20	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0087043_21	UniRef90	UniRef90_A0A415G8B6	Head-tail adaptor protein	NA
UHGV-0087043_21	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-0087043_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0087043_22	Structural annotation	TIGR01725	NA	NA
UHGV-0087043_23	Structural annotation	PF05657	NA	NA
UHGV-0087043_24	PHROG	phrog_88	major tail protein	tail
UHGV-0087043_24	UniRef90	UniRef90_A0A843HLZ4	Ig-like domain-containing protein	NA
UHGV-0087043_24	eggNOG-mapper	1487921.DP68_11355	phage major tail protein	NA
UHGV-0087043_24	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0087043_24	COG	COG5492	NA	NA
UHGV-0087043_24	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0087043_26	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0087043_26	UniRef90	UniRef90_UPI001EDCC813	phage tail tape measure protein	NA
UHGV-0087043_26	eggNOG-mapper	1536774.H70357_10670	minor tail protein	NA
UHGV-0087043_26	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0087043_26	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0087043_26	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0087043_27	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0087043_27	UniRef90	UniRef90_A0A6N2W6N8	Phage tail protein	NA
UHGV-0087043_27	eggNOG-mapper	641112.ACOK01000108_gene1808	Phage tail protein	NA
UHGV-0087043_27	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0087043_27	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0087043_27	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0087043_28	PHROG	phrog_538	minor tail protein	tail
UHGV-0087043_28	UniRef90	UniRef90_A0A843FNJ4	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0087043_28	eggNOG-mapper	742740.HMPREF9474_02260	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0087043_28	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0087043_28	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0087043_29	PHROG	phrog_1220	head protein	head and packaging
UHGV-0087043_29	eggNOG-mapper	431943.CKL_2628	COG NOG18825 non supervised orthologous group	NA
UHGV-0087043_30	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0087043_30	PHROG	phrog_95	integrase	integration and excision
UHGV-0087043_30	UniRef90	UniRef90_UPI001C033F53	recombinase family protein	NA
UHGV-0087043_30	eggNOG-mapper	411470.RUMGNA_02175	Resolvase, N terminal domain	NA
UHGV-0087043_30	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0087043_30	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0087043_30	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0087043_30	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0087043_31	Structural annotation	PF13560, MF_00535, TIGR03070, COG3655	NA	NA
UHGV-0087043_33	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0087043_33	UniRef90	UniRef90_A0A0A1GX69	HTH cro/C1-type domain-containing protein	NA
UHGV-0087043_33	eggNOG-mapper	764299.STRIC_0070	Peptidase S24-like	NA
UHGV-0087043_33	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0087043_33	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0087043_33	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0087043_34	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0087043_34	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0087043_34	UniRef90	UniRef90_A0A1C5N8X5	Helix-turn-helix	NA
UHGV-0087043_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087043_34	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0087043_34	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0087043_35	PHROG	phrog_11769	NA	unknown function
UHGV-0087043_35	UniRef90	UniRef90_A0A315ZXT4	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0087043_35	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0087043_35	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0087043_35	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0087043_35	Structural annotation	PF09681, TIGR01714, COG3355	NA	NA
UHGV-0087043_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087043_36	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0087043_43	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0087043_43	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0087043_43	UniRef90	UniRef90_A0A357NGX0	ATP-binding protein	NA
UHGV-0087043_43	eggNOG-mapper	1226322.HMPREF1545_04071	IstB-like ATP binding protein	NA
UHGV-0087043_43	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0087043_43	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0087043_43	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0087043_43	Structural annotation	PF01695, MF_01158, NF005992, COG1484	NA	NA
UHGV-0087043_45	Structural annotation	PF02917, NF041482, COG1859	NA	NA
UHGV-0087043_48	UniRef90	UniRef90_A0A6S6XZX3	NA	NA
UHGV-0087043_48	Pfam	PF04448	NA	DUF551
UHGV-0087043_49	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0087043_49	UniRef90	UniRef90_A0A265Q743	Nucleotide pyrophosphohydrolase	NA
UHGV-0087043_49	eggNOG-mapper	935948.KE386495_gene1195	MazG nucleotide pyrophosphohydrolase	NA
UHGV-0087043_49	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0087043_49	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0087043_49	Structural annotation	PF03819, MF_01020, NF001613, COG0140	NA	NA
UHGV-0087043_51	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0087043_51	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0087043_51	UniRef90	UniRef90_A0A6N6NJA4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0087043_51	eggNOG-mapper	1120985.AUMI01000019_gene2247	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0087043_51	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0087043_51	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0087043_52	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0087043_52	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0087043_52	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0087043_53	PHROG	phrog_13890	NA	unknown function
UHGV-0087043_53	UniRef90	UniRef90_R6Q1N7	Arc domain-containing protein	NA
UHGV-0087043_53	eggNOG-mapper	1519439.JPJG01000054_gene2127	NA	NA
UHGV-0087043_55	Structural annotation	COG1724	NA	NA