UHGV-0087054

Genome information

Genome length 29,894 bps

CDS count 44

Completeness 78.42% (medium-quality)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-0087054
vOTU ID	vOTU-022901
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_193727
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.42% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.8
Jumbo phage	No

Genome content
Genome length	29,894 bps
GC content	47.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	95.13%
Average CDS length	652.64 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0087054_1	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0087054_1	UniRef90	UniRef90_A0A1C5QW36	Phage-related protein	NA
UHGV-0087054_1	eggNOG-mapper	693746.OBV_25080	Phage-related minor tail protein	NA
UHGV-0087054_1	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0087054_1	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0087054_1	COG	COG5283	Phage-related tail protein	NA
UHGV-0087054_1	Structural annotation	PF10145, TIGR01760, TIGR02971, COG5280, COG3853	NA	NA
UHGV-0087054_2	PHROG	phrog_706	NA	unknown function
UHGV-0087054_2	UniRef90	UniRef90_A0A1C5QVP1	Bacteriophage Gp15 protein	NA
UHGV-0087054_2	eggNOG-mapper	1235792.C808_05375	COG NOG24969 non supervised orthologous group	NA
UHGV-0087054_2	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0087054_2	Structural annotation	PF06854	NA	NA
UHGV-0087054_3	PHROG	phrog_3099	NA	unknown function
UHGV-0087054_3	eggNOG-mapper	742765.HMPREF9457_02132	NA	NA
UHGV-0087054_3	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0087054_4	PHROG	phrog_3266	tail completion	connector
UHGV-0087054_4	eggNOG-mapper	411470.RUMGNA_02223	NA	NA
UHGV-0087054_4	Structural annotation	PF12691	NA	NA
UHGV-0087054_5	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0087054_5	UniRef90	UniRef90_UPI001C8E2A32	minor capsid protein	NA
UHGV-0087054_5	eggNOG-mapper	411470.RUMGNA_02222	NA	NA
UHGV-0087054_6	PHROG	phrog_3366	NA	unknown function
UHGV-0087054_6	eggNOG-mapper	411470.RUMGNA_02221	NA	NA
UHGV-0087054_6	Pfam	PF20536	NA	DUF6751
UHGV-0087054_6	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0087054_7	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0087054_7	eggNOG-mapper	658655.HMPREF0988_02559	NA	NA
UHGV-0087054_8	PHROG	phrog_422	major head protein	head and packaging
UHGV-0087054_8	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0087054_8	eggNOG-mapper	679192.HMPREF9013_1301	NA	NA
UHGV-0087054_9	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0087054_9	UniRef90	UniRef90_K1ST28	Phage minor structural protein (Fragment)	NA
UHGV-0087054_9	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0087054_9	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0087054_9	Structural annotation	PF06810	NA	NA
UHGV-0087054_10	PHROG	phrog_13199	NA	unknown function
UHGV-0087054_10	eggNOG-mapper	476272.RUMHYD_02851	NA	NA
UHGV-0087054_11	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0087054_11	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0087054_11	eggNOG-mapper	521003.COLINT_02327	NA	NA
UHGV-0087054_12	PHROG	phrog_918	NA	unknown function
UHGV-0087054_12	UniRef90	UniRef90_UPI00156D5D02	NA	NA
UHGV-0087054_12	eggNOG-mapper	537007.BLAHAN_05515	NA	NA
UHGV-0087054_12	Pfam	PF19791	NA	DUF6275
UHGV-0087054_12	Structural annotation	PF19791	NA	NA
UHGV-0087054_13	PHROG	phrog_21498	NA	unknown function
UHGV-0087054_13	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0087054_13	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0087054_13	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0087054_14	PHROG	phrog_34731	NA	unknown function
UHGV-0087054_14	eggNOG-mapper	1400520.LFAB_08810	NA	NA
UHGV-0087054_14	Structural annotation	PF02699, MF_00369, TIGR00739, COG5475	NA	NA
UHGV-0087054_15	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0087054_15	UniRef90	UniRef90_UPI001917634A	minor capsid protein	NA
UHGV-0087054_15	eggNOG-mapper	1235799.C818_04219	Phage minor capsid protein 2	NA
UHGV-0087054_15	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0087054_15	Pfam	PF21814	NA	DUF6883
UHGV-0087054_15	COG	COG2369	NA	NA
UHGV-0087054_16	PHROG	phrog_533	portal protein	head and packaging
UHGV-0087054_16	UniRef90	UniRef90_UPI00156ECCAD	phage capsid protein	NA
UHGV-0087054_16	eggNOG-mapper	658655.HMPREF0988_02564	NA	NA
UHGV-0087054_16	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0087054_17	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0087054_17	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0087054_17	UniRef90	UniRef90_UPI00156FDA8C	terminase family protein	NA
UHGV-0087054_17	eggNOG-mapper	742723.HMPREF9477_00911	Phage terminase large subunit	NA
UHGV-0087054_17	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0087054_17	COG	COG1783	Phage terminase large subunit	NA
UHGV-0087054_17	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0087054_18	PHROG	phrog_2412	NA	unknown function
UHGV-0087054_18	UniRef90	UniRef90_UPI001E414EFE	KGG domain-containing protein	NA
UHGV-0087054_18	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-0087054_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0087054_19	UniRef90	UniRef90_A0A3A9HG24	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0087054_19	eggNOG-mapper	469618.FVAG_00790	NA	NA
UHGV-0087054_19	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0087054_19	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0087054_22	PHROG	phrog_3205	NA	unknown function
UHGV-0087054_22	UniRef90	UniRef90_E6EWD7	EF-hand domain-containing protein	NA
UHGV-0087054_22	eggNOG-mapper	1158602.I590_02965	NA	NA
UHGV-0087054_23	PHROG	phrog_15198	NA	unknown function
UHGV-0087054_23	UniRef90	UniRef90_UPI0015702672	NA	NA
UHGV-0087054_23	eggNOG-mapper	1235799.C818_04211	NA	NA
UHGV-0087054_23	Pfam	PF04448	NA	DUF551
UHGV-0087054_23	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0087054_26	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0087054_26	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0087054_26	UniRef90	UniRef90_UPI001C026824	single-stranded DNA-binding protein	NA
UHGV-0087054_26	eggNOG-mapper	658088.HMPREF0987_02000	Single-strand binding protein family	NA
UHGV-0087054_26	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0087054_26	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0087054_26	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0087054_26	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0087054_26	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0087054_27	PHROG	phrog_9300	NA	unknown function
UHGV-0087054_28	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0087054_28	UniRef90	UniRef90_UPI0015704587	NA	NA
UHGV-0087054_28	eggNOG-mapper	1507.HMPREF0262_00435	NA	NA
UHGV-0087054_28	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0087054_28	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0087054_28	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-0087054_29	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0087054_29	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0087054_29	UniRef90	UniRef90_UPI001C01AEC7	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0087054_29	eggNOG-mapper	857293.CAAU_0790	Endodeoxyribonuclease RusA	NA
UHGV-0087054_29	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0087054_29	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0087054_29	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0087054_30	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0087054_30	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0087054_30	UniRef90	UniRef90_UPI00156E3AA2	recombinase RecT	NA
UHGV-0087054_30	eggNOG-mapper	658088.HMPREF0987_00529	RecT family	NA
UHGV-0087054_30	Pfam	PF03837	RecT family	RecT
UHGV-0087054_30	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0087054_30	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0087054_30	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0087054_31	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0087054_31	UniRef90	UniRef90_UPI0015715373	YqaJ viral recombinase family protein	NA
UHGV-0087054_31	eggNOG-mapper	411902.CLOBOL_00693	YqaJ-like viral recombinase domain	NA
UHGV-0087054_31	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0087054_31	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0087054_31	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0087054_31	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0087054_33	PHROG	phrog_5070	NA	unknown function
UHGV-0087054_33	UniRef90	UniRef90_UPI001F4FA151	polymer-forming cytoskeletal protein	NA
UHGV-0087054_33	eggNOG-mapper	1094755.MCO_00957	Homologous to orf229 gp Streptococcus thermophilus bacteriophage Sfi19 gi 9632919 ref NP_049948.1	NA
UHGV-0087054_33	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0087054_35	PHROG	phrog_6058	NA	unknown function
UHGV-0087054_35	UniRef90	UniRef90_A0A1C5QR48	Helix-turn-helix	NA
UHGV-0087054_35	eggNOG-mapper	742740.HMPREF9474_02381	NA	NA
UHGV-0087054_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087054_35	Structural annotation	PF01381, PF12728, MF_00535, NF041951, COG1396	NA	NA
UHGV-0087054_37	UniRef90	UniRef90_R6BIK1	HTH cro/C1-type domain-containing protein	NA
UHGV-0087054_37	eggNOG-mapper	97139.C824_00056	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0087054_37	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0087054_39	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0087054_39	UniRef90	UniRef90_UPI001C0275D7	helix-turn-helix domain-containing protein	NA
UHGV-0087054_39	eggNOG-mapper	1235800.C819_02266	Helix-turn-helix XRE-family like proteins	NA
UHGV-0087054_39	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0087054_39	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0087054_42	eggNOG-mapper	1179226.AJXO01000005_gene1810	NA	NA
UHGV-0087054_43	PHROG	phrog_15412	NA	unknown function
UHGV-0087054_43	UniRef90	UniRef90_UPI00156E50E6	heavy metal-binding domain-containing protein	NA
UHGV-0087054_43	eggNOG-mapper	537013.CLOSTMETH_03242	Putative heavy-metal-binding	NA
UHGV-0087054_43	Pfam	PF01906	Putative heavy-metal-binding	YbjQ_1
UHGV-0087054_43	COG	COG0393	NA	NA
UHGV-0087054_44	KOfam	K14059	int; integrase	NA
UHGV-0087054_44	PHROG	phrog_1	integrase	integration and excision
UHGV-0087054_44	UniRef90	UniRef90_A0A1C5QPZ2	Integrase	NA
UHGV-0087054_44	eggNOG-mapper	411902.CLOBOL_02558	Belongs to the 'phage' integrase family	NA
UHGV-0087054_44	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0087054_44	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0087054_44	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0087054_44	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0087054_44	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA