UHGV-0087063

Genome information

Genome length 40,871 bps

CDS count 65

Completeness 99.90% (high-quality)

geNomad score 0.9703

Prediction confidence Confident

Genome information
Genome ID	UHGV-0087063
vOTU ID	vOTU-060639
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_177076
BioSample	SAMEA3449417
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9703
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.37
Jumbo phage	No

Genome content
Genome length	40,871 bps
GC content	55.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	90.70%
Average CDS length	572.35 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0087063_1	PHROG	phrog_7858	NA	unknown function
UHGV-0087063_1	eggNOG-mapper	1200557.JHWV01000006_gene1735	NA	NA
UHGV-0087063_2	PHROG	phrog_2450	NA	unknown function
UHGV-0087063_2	UniRef90	UniRef90_A0A7X7IHC3	NA	NA
UHGV-0087063_2	eggNOG-mapper	1200557.JHWV01000006_gene1736	NA	NA
UHGV-0087063_2	AcrCatalog	cluster_17617	NA	NA
UHGV-0087063_2	Structural annotation	COG3189	NA	NA
UHGV-0087063_3	UniRef90	UniRef90_A0A8B3C4D3	NA	NA
UHGV-0087063_3	eggNOG-mapper	1203611.KB894558_gene1146	NA	NA
UHGV-0087063_3	Pfam	PF11171	NA	DUF2958
UHGV-0087063_3	COG	COG3616	D-serine deaminase, pyridoxal phosphate-dependent	NA
UHGV-0087063_3	Structural annotation	PF11171	NA	NA
UHGV-0087063_4	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0087063_5	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0087063_5	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0087063_5	UniRef90	UniRef90_A0A1C6B5C8	Single-stranded DNA-binding protein	NA
UHGV-0087063_5	eggNOG-mapper	1392502.JNIO01000002_gene592	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0087063_5	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0087063_5	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0087063_5	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0087063_5	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0087063_5	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0087063_6	PHROG	phrog_3301	pyrophosphatase	other
UHGV-0087063_6	eggNOG-mapper	755731.Clo1100_1151	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0087063_6	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0087063_6	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0087063_7	eggNOG-mapper	394503.Ccel_3303	NA	NA
UHGV-0087063_10	PHROG	phrog_6568	NA	unknown function
UHGV-0087063_10	eggNOG-mapper	1203606.HMPREF1526_00241	NA	NA
UHGV-0087063_11	UniRef90	UniRef90_A0A374AB28	Thymidylate synthase ThyX	NA
UHGV-0087063_11	eggNOG-mapper	411470.RUMGNA_00015	NA	NA
UHGV-0087063_11	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0087063_11	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0087063_13	PHROG	phrog_7839	NA	unknown function
UHGV-0087063_13	eggNOG-mapper	202954.BBNK01000034_gene3794	NA	NA
UHGV-0087063_16	PHROG	phrog_874	NA	unknown function
UHGV-0087063_16	UniRef90	UniRef90_A0A4P6LRJ9	ASCH domain-containing protein	NA
UHGV-0087063_16	eggNOG-mapper	1235793.C809_02214	NA	NA
UHGV-0087063_16	Structural annotation	PF04266, MF_00684, NF003443, COG4043	NA	NA
UHGV-0087063_18	PHROG	phrog_2045	NA	unknown function
UHGV-0087063_18	UniRef90	UniRef90_A0A1T5AKZ9	Protein gp37	NA
UHGV-0087063_18	eggNOG-mapper	1235790.C805_00077	NA	NA
UHGV-0087063_18	Pfam	PF07505	NA	DUF5131
UHGV-0087063_18	COG	COG4422	NA	NA
UHGV-0087063_18	Structural annotation	PF07505, TIGR04471, COG4422	NA	NA
UHGV-0087063_20	KOfam	K00789	metK, MAT; S-adenosylmethionine synthetase [EC:2.5.1.6]	NA
UHGV-0087063_20	PHROG	phrog_1569	NA	unknown function
UHGV-0087063_20	UniRef90	UniRef90_UPI0011C986E0	methionine adenosyltransferase	NA
UHGV-0087063_20	eggNOG-mapper	877414.ATWA01000038_gene1524	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme	NA
UHGV-0087063_20	Pfam	PF00438	S-adenosylmethionine synthetase, N-terminal domain	S-AdoMet_synt_N
UHGV-0087063_20	Pfam	PF02772	S-adenosylmethionine synthetase, central domain	S-AdoMet_synt_M
UHGV-0087063_20	Pfam	PF02773	S-adenosylmethionine synthetase, C-terminal domain	S-AdoMet_synt_C
UHGV-0087063_20	NCBIFam	TIGR01034.1	methionine adenosyltransferase	NA
UHGV-0087063_20	COG	COG0192	S-adenosylmethionine synthetase	NA
UHGV-0087063_20	Structural annotation	PF02773, PF02772, PF00438, MF_00086, TIGR01034, COG0192	NA	NA
UHGV-0087063_23	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0087063_23	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0087063_23	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0087063_24	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0087063_24	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0087063_24	UniRef90	UniRef90_A0A5D8QH87	AAA family ATPase	NA
UHGV-0087063_24	eggNOG-mapper	411459.RUMOBE_01035	NA	NA
UHGV-0087063_24	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0087063_24	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0087063_24	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0087063_24	Structural annotation	PF01695, MF_01158, NF005992, COG1484	NA	NA
UHGV-0087063_25	PHROG	phrog_5810	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0087063_25	eggNOG-mapper	742740.HMPREF9474_03117	NA	NA
UHGV-0087063_25	Structural annotation	PF01978, NF000243, COG0735	NA	NA
UHGV-0087063_26	PHROG	phrog_1029	NA	unknown function
UHGV-0087063_26	UniRef90	UniRef90_T0TFF0	NA	NA
UHGV-0087063_26	eggNOG-mapper	588581.Cpap_1471	NA	NA
UHGV-0087063_26	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0087063_27	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0087063_27	UniRef90	UniRef90_A0A316QIB2	Replication terminator protein	NA
UHGV-0087063_27	eggNOG-mapper	411471.SUBVAR_05832	NA	NA
UHGV-0087063_28	PHROG	phrog_3657	NA	unknown function
UHGV-0087063_28	eggNOG-mapper	411459.RUMOBE_01030	NA	NA
UHGV-0087063_28	Structural annotation	PF04404	NA	NA
UHGV-0087063_29	PHROG	phrog_10477	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0087063_30	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0087063_30	UniRef90	UniRef90_A0A8G0USS8	PD-(D/E)XK nuclease family protein	NA
UHGV-0087063_30	eggNOG-mapper	1218075.BAYA01000003_gene606	NA	NA
UHGV-0087063_30	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0087063_32	Pfam	PF04703	FaeA-like protein	FaeA
UHGV-0087063_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087063_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0087063_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087063_34	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0087063_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087063_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0087063_36	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0087063_36	UniRef90	UniRef90_A0A355JCJ7	HTH cro/C1-type domain-containing protein	NA
UHGV-0087063_36	eggNOG-mapper	1226325.HMPREF1548_03112	Helix-turn-helix domain	NA
UHGV-0087063_36	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0087063_37	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0087063_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0087063_37	UniRef90	UniRef90_A0A2V2F4F9	Transcriptional regulator	NA
UHGV-0087063_37	eggNOG-mapper	693746.OBV_43290	addiction module antidote protein HigA	NA
UHGV-0087063_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087063_37	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0087063_37	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0087063_38	eggNOG-mapper	390989.JOEG01000036_gene3697	NA	NA
UHGV-0087063_40	KOfam	K14059	int; integrase	NA
UHGV-0087063_40	PHROG	phrog_1	integrase	integration and excision
UHGV-0087063_40	UniRef90	UniRef90_A0A1V5YD17	Transposase	NA
UHGV-0087063_40	eggNOG-mapper	643648.Slip_1975	Belongs to the 'phage' integrase family	NA
UHGV-0087063_40	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0087063_40	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0087063_40	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0087063_41	KOfam	K14059	int; integrase	NA
UHGV-0087063_41	PHROG	phrog_1	integrase	integration and excision
UHGV-0087063_41	UniRef90	UniRef90_A0A1X2FY82	Site-specific integrase	NA
UHGV-0087063_41	eggNOG-mapper	760568.Desku_1398	Belongs to the 'phage' integrase family	NA
UHGV-0087063_41	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0087063_41	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0087063_41	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0087063_41	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0087063_43	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0087063_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0087063_43	UniRef90	UniRef90_A0A2V2G1L8	HTH cro/C1-type domain-containing protein	NA
UHGV-0087063_43	eggNOG-mapper	760568.Desku_2060	PFAM Helix-turn-helix	NA
UHGV-0087063_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087063_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0087063_43	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0087063_45	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0087063_45	UniRef90	UniRef90_A0A373CLV7	XRE family transcriptional regulator	NA
UHGV-0087063_45	eggNOG-mapper	864563.HMPREF9166_1284	NA	NA
UHGV-0087063_45	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0087063_45	Structural annotation	PF06892, NF040522, COG1476	NA	NA
UHGV-0087063_46	UniRef90	UniRef90_A0A1Q6JK14	HTH_17 domain-containing protein	NA
UHGV-0087063_46	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0087063_46	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0087063_47	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0087063_47	UniRef90	UniRef90_A0A5D3I7V8	DNA primase	NA
UHGV-0087063_47	eggNOG-mapper	760568.Desku_3516	DNA primase	NA
UHGV-0087063_47	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0087063_47	Structural annotation	PF06048, PF01807, PF18662, PF19898, MF_00974, MF_00016, TIGR01391, NF011296, COG5519, COG0358	NA	NA
UHGV-0087063_49	PHROG	phrog_15609	NA	unknown function
UHGV-0087063_49	UniRef90	UniRef90_A0A3D2H4F9	HTH_ParB domain-containing protein	NA
UHGV-0087063_49	eggNOG-mapper	1235835.C814_03157	NA	NA
UHGV-0087063_49	Pfam	PF11300	NA	DUF3102
UHGV-0087063_49	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-0087063_49	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0087063_51	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0087063_51	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0087063_51	UniRef90	UniRef90_A0A2V2FX13	Single-stranded DNA-binding protein	NA
UHGV-0087063_51	eggNOG-mapper	500635.MITSMUL_04510	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0087063_51	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0087063_51	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0087063_51	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0087063_51	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0087063_51	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0087063_52	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0087063_52	UniRef90	UniRef90_A0A1Q6JK08	Sigma70_r4 domain-containing protein	NA
UHGV-0087063_53	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0087063_53	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0087063_53	UniRef90	UniRef90_A0A2V2FX62	Endonuclease	NA
UHGV-0087063_53	eggNOG-mapper	1396.DJ87_2698	HNH endonuclease	NA
UHGV-0087063_53	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0087063_53	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0087063_54	eggNOG-mapper	1329516.JPST01000016_gene392	Phage terminase, small subunit	NA
UHGV-0087063_54	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0087063_55	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0087063_55	UniRef90	UniRef90_A0A2V2G2T2	Terminase large subunit	NA
UHGV-0087063_55	eggNOG-mapper	1295642.H839_15973	Phage Terminase	NA
UHGV-0087063_55	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0087063_55	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0087063_55	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0087063_55	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0087063_56	PHROG	phrog_12	portal protein	head and packaging
UHGV-0087063_56	UniRef90	UniRef90_A0A2V2G1D0	Phage portal protein	NA
UHGV-0087063_56	eggNOG-mapper	235909.GK0529	Phage portal protein	NA
UHGV-0087063_56	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0087063_56	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0087063_56	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0087063_56	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0087063_57	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0087063_57	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0087063_57	UniRef90	UniRef90_A0A2V2G0Z1	Peptidase	NA
UHGV-0087063_57	eggNOG-mapper	1235799.C818_00440	Serine dehydrogenase proteinase	NA
UHGV-0087063_57	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0087063_57	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0087063_57	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0087063_58	PHROG	phrog_10	major head protein	head and packaging
UHGV-0087063_58	UniRef90	UniRef90_A0A2V2FYC2	Phage major capsid protein	NA
UHGV-0087063_58	eggNOG-mapper	1007103.AFHW01000142_gene1299	Phage capsid family	NA
UHGV-0087063_58	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0087063_58	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0087063_58	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0087063_58	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0087063_60	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0087063_61	PHROG	phrog_25	head closure Hc1	connector
UHGV-0087063_61	UniRef90	UniRef90_A0A0L8EXW2	Head-tail adaptor protein	NA
UHGV-0087063_61	eggNOG-mapper	1408424.JHYI01000032_gene3819	Phage head-tail joining protein	NA
UHGV-0087063_61	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0087063_61	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0087063_61	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0087063_61	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0087063_62	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0087063_62	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0087063_62	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0087063_62	Structural annotation	TIGR01725	NA	NA
UHGV-0087063_63	PHROG	phrog_78	tail terminator	connector
UHGV-0087063_63	Structural annotation	PF05657	NA	NA
UHGV-0087063_64	PHROG	phrog_88	major tail protein	tail
UHGV-0087063_64	UniRef90	UniRef90_A0A6N8BAA1	Big_5 domain-containing protein	NA
UHGV-0087063_64	eggNOG-mapper	1238184.CM001792_gene2511	Phage tail tube protein	NA
UHGV-0087063_64	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0087063_64	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0087063_64	COG	COG5492	NA	NA
UHGV-0087063_64	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA