UHGV-0087102

Genome information

Genome length 37,517 bps

CDS count 49

Completeness 100.00% (complete)

geNomad score 0.9624

Prediction confidence Confident

Genome information
Genome ID	UHGV-0087102
vOTU ID	vOTU-045256
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_183986
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9624
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.43
Jumbo phage	No

Genome content
Genome length	37,517 bps
GC content	28.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	90.67%
Average CDS length	696.31 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0087102_1	KOfam	K20254	PLIN4; perilipin-4	NA
UHGV-0087102_1	PHROG	phrog_17020	NA	unknown function
UHGV-0087102_1	eggNOG-mapper	411468.CLOSCI_00194	Phage tail tape measure protein, TP901 family	NA
UHGV-0087102_1	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0087102_2	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0087102_2	UniRef90	UniRef90_A0A1C5VG03	Phage-related protein	NA
UHGV-0087102_2	eggNOG-mapper	573061.Clocel_3532	tail component	NA
UHGV-0087102_2	COG	COG4722	Phage-related protein YomH	NA
UHGV-0087102_2	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0087102_3	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0087102_3	PHROG	phrog_7043	tail protein	tail
UHGV-0087102_3	UniRef90	UniRef90_UPI0018AA7BAA	SH3 domain-containing protein	NA
UHGV-0087102_3	eggNOG-mapper	1292035.H476_1004	Prophage endopeptidase tail	NA
UHGV-0087102_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0087102_3	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0087102_3	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0087102_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0087102_3	COG	COG4926	Phage-related protein	NA
UHGV-0087102_3	Structural annotation	PF14594, PF08239, PF19081, PF13229, TIGR01665, NF040678, COG4926, COG4991, COG0791	NA	NA
UHGV-0087102_4	PHROG	phrog_28673	tail protein	tail
UHGV-0087102_4	eggNOG-mapper	1540090.A0A0A0RS40_9CAUD	NA	NA
UHGV-0087102_4	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0087102_4	Structural annotation	PF10651, PF14606	NA	NA
UHGV-0087102_5	UniRef90	UniRef90_A0A542AKB6	Anaerobic ribonucleoside-triphosphate reductase-like protein	NA
UHGV-0087102_5	eggNOG-mapper	1105031.HMPREF1141_0490	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0087102_5	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0087102_5	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0087102_6	PHROG	phrog_1863	NA	unknown function
UHGV-0087102_6	UniRef90	UniRef90_A0A2K9NYV1	Holin	NA
UHGV-0087102_6	eggNOG-mapper	428125.CLOLEP_01781	NA	NA
UHGV-0087102_7	PHROG	phrog_1129	holin	lysis
UHGV-0087102_7	UniRef90	UniRef90_A0A0B3VH17	Holin	NA
UHGV-0087102_7	eggNOG-mapper	702450.CUW_2556	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0087102_7	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0087102_7	Structural annotation	PF06946	NA	NA
UHGV-0087102_8	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0087102_8	PHROG	phrog_435	endolysin	lysis
UHGV-0087102_8	UniRef90	UniRef90_UPI0018A97EC2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0087102_8	eggNOG-mapper	445973.CLOBAR_01731	Ami_3	NA
UHGV-0087102_8	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0087102_8	Pfam	PF19087	NA	DUF5776
UHGV-0087102_8	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0087102_8	Structural annotation	PF01520, PF19087, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0087102_9	PHROG	phrog_9996	NA	unknown function
UHGV-0087102_9	UniRef90	UniRef90_UPI0011071500	replication-relaxation family protein	NA
UHGV-0087102_9	Pfam	PF13814	Replication-relaxation	Replic_Relax
UHGV-0087102_9	Structural annotation	PF13814, MF_01819, NF041423, COG1733	NA	NA
UHGV-0087102_10	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0087102_10	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0087102_10	UniRef90	UniRef90_A0A267MQD1	FtsK domain-containing protein	NA
UHGV-0087102_10	eggNOG-mapper	742743.HMPREF9453_00743	FtsK SpoIIIE family protein	NA
UHGV-0087102_10	PADLOC	SspH_00004	SspH	SSP
UHGV-0087102_10	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-0087102_10	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0087102_11	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0087102_11	PHROG	phrog_95	integrase	integration and excision
UHGV-0087102_11	UniRef90	UniRef90_UPI0011073ABB	recombinase family protein	NA
UHGV-0087102_11	eggNOG-mapper	1151292.QEW_0309	Resolvase, N terminal domain	NA
UHGV-0087102_11	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0087102_11	Pfam	PF07508	Recombinase	Recombinase
UHGV-0087102_11	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0087102_11	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0087102_11	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0087102_12	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0087102_12	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0087102_12	UniRef90	UniRef90_UPI0011069CE3	helix-turn-helix domain-containing protein	NA
UHGV-0087102_12	eggNOG-mapper	742741.HMPREF9475_00399	Helix-turn-helix XRE-family like proteins	NA
UHGV-0087102_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087102_12	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0087102_14	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0087102_14	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0087102_14	UniRef90	UniRef90_UPI0011061316	helix-turn-helix domain-containing protein	NA
UHGV-0087102_14	eggNOG-mapper	411468.CLOSCI_01457	Helix-turn-helix XRE-family like proteins	NA
UHGV-0087102_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087102_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0087102_14	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0087102_17	UniRef90	UniRef90_UPI001105B88F	Rho termination factor N-terminal domain-containing protein	NA
UHGV-0087102_17	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0087102_19	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0087102_19	UniRef90	UniRef90_A0A1I5LZL1	Relaxase/Mobilisation nuclease domain-containing protein	NA
UHGV-0087102_19	eggNOG-mapper	1196322.A370_05744	NA	NA
UHGV-0087102_19	Structural annotation	PF21578	NA	NA
UHGV-0087102_20	PHROG	phrog_21522	NA	unknown function
UHGV-0087102_20	eggNOG-mapper	272563.CD630_29360	NA	NA
UHGV-0087102_20	COG	COG3081	dsDNA-binding nucleoid-associated protein YejK/NdpA	NA
UHGV-0087102_21	PHROG	phrog_2379	anti-repressor	transcription regulation
UHGV-0087102_21	UniRef90	UniRef90_A0A2C1CA95	Rha family transcriptional regulator	NA
UHGV-0087102_21	eggNOG-mapper	1122147.AUEH01000021_gene610	SOS response	NA
UHGV-0087102_21	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0087102_21	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0087102_21	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0087102_21	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0087102_25	PHROG	phrog_5164	NA	unknown function
UHGV-0087102_26	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0087102_27	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0087102_27	UniRef90	UniRef90_UPI001C01CFF8	SANT/Myb domain-containing protein	NA
UHGV-0087102_27	eggNOG-mapper	756499.Desde_1065	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-0087102_27	Pfam	PF00249	Myb-like DNA-binding domain	Myb_DNA-binding
UHGV-0087102_27	Pfam	PF07750	GcrA cell cycle regulator	GcrA
UHGV-0087102_27	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0087102_27	Structural annotation	PF13936, NF040595, COG2771	NA	NA
UHGV-0087102_28	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0087102_28	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0087102_28	UniRef90	UniRef90_A0A6N3G1G0	Single-stranded DNA-binding protein	NA
UHGV-0087102_28	eggNOG-mapper	445973.CLOBAR_00026	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0087102_28	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0087102_28	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0087102_28	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0087102_28	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0087102_28	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0087102_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0087102_33	UniRef90	UniRef90_UPI0007BBAD29	transcriptional regulator	NA
UHGV-0087102_33	eggNOG-mapper	1151292.QEW_0398	sigma factor activity	NA
UHGV-0087102_33	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0087102_33	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0087102_34	PHROG	phrog_9079	NA	unknown function
UHGV-0087102_34	eggNOG-mapper	445973.CLOBAR_02450	NA	NA
UHGV-0087102_36	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0087102_36	UniRef90	UniRef90_UPI000543E00A	HNH endonuclease	NA
UHGV-0087102_36	eggNOG-mapper	768486.EHR_09545	HNH nucleases	NA
UHGV-0087102_36	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0087102_37	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0087102_37	UniRef90	UniRef90_UPI0014858467	HNH endonuclease	NA
UHGV-0087102_37	eggNOG-mapper	634956.Geoth_0783	HNH endonuclease	NA
UHGV-0087102_37	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0087102_37	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0087102_38	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0087102_38	UniRef90	UniRef90_UPI0003D5A199	phage terminase small subunit P27 family	NA
UHGV-0087102_38	eggNOG-mapper	1121342.AUCO01000002_gene887	Phage terminase, small subunit	NA
UHGV-0087102_38	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0087102_38	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0087102_38	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0087102_39	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0087102_39	UniRef90	UniRef90_UPI0011061D03	terminase large subunit	NA
UHGV-0087102_39	eggNOG-mapper	1211817.CCAT010000053_gene2129	Phage Terminase	NA
UHGV-0087102_39	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0087102_39	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0087102_39	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0087102_39	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0087102_40	PHROG	phrog_12	portal protein	head and packaging
UHGV-0087102_40	UniRef90	UniRef90_UPI00148519DF	phage portal protein	NA
UHGV-0087102_40	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0087102_40	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0087102_40	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0087102_40	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0087102_40	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0087102_41	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0087102_41	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0087102_41	UniRef90	UniRef90_A0A1C5YER3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0087102_41	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0087102_41	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0087102_41	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0087102_41	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0087102_42	PHROG	phrog_10	major head protein	head and packaging
UHGV-0087102_42	UniRef90	UniRef90_UPI001107332E	phage major capsid protein	NA
UHGV-0087102_42	eggNOG-mapper	349161.Dred_2604	Phage capsid family	NA
UHGV-0087102_42	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0087102_42	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0087102_42	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0087102_42	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0087102_43	PHROG	phrog_749	NA	unknown function
UHGV-0087102_43	UniRef90	UniRef90_A0A1I3QJG6	Phage gp6-like head-tail connector protein	NA
UHGV-0087102_43	eggNOG-mapper	1211817.CCAT010000008_gene943	NA	NA
UHGV-0087102_44	PHROG	phrog_5635	head-tail adaptor	connector
UHGV-0087102_44	UniRef90	UniRef90_UPI0011070497	phage head closure protein	NA
UHGV-0087102_44	eggNOG-mapper	1220589.CD32_01710	NA	NA
UHGV-0087102_44	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0087102_44	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0087102_45	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0087102_46	PHROG	phrog_5509	neck protein	connector
UHGV-0087102_46	eggNOG-mapper	936140.AEOT01000014_gene1361	NA	NA
UHGV-0087102_46	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0087102_47	UniRef90	UniRef90_A0A316S919	Phage tail protein	NA
UHGV-0087102_47	eggNOG-mapper	1121866.AUGK01000006_gene884	NA	NA
UHGV-0087102_47	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0087102_49	PHROG	phrog_23464	NA	unknown function
UHGV-0087102_49	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0087102_49	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0087102_49	COG	COG5283	Phage-related tail protein	NA
UHGV-0087102_49	Structural annotation	PF06120	NA	NA