UHGV-0087106

Genome information

Genome length 31,754 bps

CDS count 66

Completeness 53.35% (medium-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0087106
vOTU ID	vOTU-027176
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_175742
BioSample	SAMEA3449381
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	6.77
Jumbo phage	No

Genome content
Genome length	31,754 bps
GC content	38.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	89.31%
Average CDS length	434.18 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0087106_1	UniRef90	UniRef90_A0A174ZLJ7	UPF0291 protein ERS852502_01695	NA
UHGV-0087106_1	eggNOG-mapper	471875.RUMLAC_02113	UPF0291 protein	NA
UHGV-0087106_1	Pfam	PF05979	NA	DUF896
UHGV-0087106_1	COG	COG4224	NA	NA
UHGV-0087106_1	HAMAP	MF_01103	UPF0291 protein	NA
UHGV-0087106_2	UniRef90	UniRef90_UPI0019608FAB	NA	NA
UHGV-0087106_2	eggNOG-mapper	665950.HMPREF1025_00069	NA	NA
UHGV-0087106_2	Pfam	PF14056	NA	DUF4250
UHGV-0087106_2	Structural annotation	PF14056	NA	NA
UHGV-0087106_3	UniRef90	UniRef90_R6G3J8	(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB	NA
UHGV-0087106_3	eggNOG-mapper	658088.HMPREF0987_00181	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	NA
UHGV-0087106_3	COG	COG0621	tRNA A37 methylthiotransferase MiaB	NA
UHGV-0087106_4	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0087106_4	PHROG	phrog_95	integrase	integration and excision
UHGV-0087106_4	UniRef90	UniRef90_A0A173SBX0	DNA-invertase hin	NA
UHGV-0087106_4	eggNOG-mapper	411468.CLOSCI_00582	Recombinase	NA
UHGV-0087106_4	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0087106_4	Pfam	PF07508	Recombinase	Recombinase
UHGV-0087106_4	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0087106_4	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0087106_4	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0087106_5	PHROG	phrog_9418	NA	unknown function
UHGV-0087106_5	eggNOG-mapper	411462.DORLON_00822	NA	NA
UHGV-0087106_5	Structural annotation	PF10233	NA	NA
UHGV-0087106_6	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0087106_6	Pfam	PF17854	FtsK alpha domain	FtsK_alpha
UHGV-0087106_7	PHROG	phrog_20886	NA	unknown function
UHGV-0087106_7	eggNOG-mapper	411462.DORLON_00820	NA	NA
UHGV-0087106_7	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0087106_8	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0087106_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0087106_8	UniRef90	UniRef90_A0A415D4V1	XRE family transcriptional regulator	NA
UHGV-0087106_8	eggNOG-mapper	476272.RUMHYD_02826	TRANSCRIPTIONal	NA
UHGV-0087106_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087106_8	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0087106_8	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0087106_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0087106_9	UniRef90	UniRef90_UPI001898A404	helix-turn-helix transcriptional regulator	NA
UHGV-0087106_9	eggNOG-mapper	1304866.K413DRAFT_0833	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0087106_9	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0087106_9	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0087106_12	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0087106_12	UniRef90	UniRef90_UPI0018972D4E	ORF6C domain-containing protein	NA
UHGV-0087106_12	eggNOG-mapper	596329.HMPREF0631_1352	BRO family, N-terminal domain protein	NA
UHGV-0087106_12	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0087106_12	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0087106_12	COG	COG3617	Prophage antirepressor	NA
UHGV-0087106_12	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0087106_13	PHROG	phrog_3502	NA	unknown function
UHGV-0087106_13	UniRef90	UniRef90_A0A6L5X328	MarR family transcriptional regulator	NA
UHGV-0087106_13	eggNOG-mapper	1499683.CCFF01000013_gene198	LexA DNA binding domain	NA
UHGV-0087106_13	Pfam	PF04703	FaeA-like protein	FaeA
UHGV-0087106_13	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0087106_13	Structural annotation	PF01726, MF_00732, TIGR02944, COG1321	NA	NA
UHGV-0087106_16	PHROG	phrog_4292	NA	unknown function
UHGV-0087106_17	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0087106_17	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0087106_17	UniRef90	UniRef90_UPI001319D695	AAA family ATPase	NA
UHGV-0087106_17	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-0087106_17	Pfam	PF13476	AAA domain	AAA_23
UHGV-0087106_17	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0087106_17	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0087106_19	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0087106_19	UniRef90	UniRef90_A0A173SDT4	RecT family	NA
UHGV-0087106_19	eggNOG-mapper	658655.HMPREF0988_00886	NA	NA
UHGV-0087106_19	Pfam	PF03837	RecT family	RecT
UHGV-0087106_19	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0087106_21	KOfam	K06940	NA	NA
UHGV-0087106_21	PHROG	phrog_32498	NA	unknown function
UHGV-0087106_21	UniRef90	UniRef90_A0A415D557	YkgJ family cysteine cluster protein	NA
UHGV-0087106_21	eggNOG-mapper	476272.RUMHYD_03327	Putative zinc- or iron-chelating domain	NA
UHGV-0087106_21	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0087106_22	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0087106_22	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0087106_22	UniRef90	UniRef90_UPI000CFA6A82	MBL fold metallo-hydrolase	NA
UHGV-0087106_22	eggNOG-mapper	658655.HMPREF0988_00882	Metallo-beta-lactamase superfamily	NA
UHGV-0087106_22	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0087106_22	dbAPIS	APIS058	NA	NA
UHGV-0087106_22	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0087106_22	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0087106_23	PHROG	phrog_24386	NA	unknown function
UHGV-0087106_23	eggNOG-mapper	397290.C810_01513	COG NOG28949 non supervised orthologous group	NA
UHGV-0087106_23	COG	COG0241	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	NA
UHGV-0087106_23	Structural annotation	TIGR01689, COG0241	NA	NA
UHGV-0087106_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0087106_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0087106_24	UniRef90	UniRef90_UPI000CF9318B	single-stranded DNA-binding protein	NA
UHGV-0087106_24	eggNOG-mapper	742723.HMPREF9477_01387	Single-strand binding protein family	NA
UHGV-0087106_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0087106_24	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0087106_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0087106_24	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0087106_24	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0087106_27	eggNOG-mapper	476272.RUMHYD_02840	NA	NA
UHGV-0087106_27	Structural annotation	PF19962, COG1579	NA	NA
UHGV-0087106_28	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0087106_28	UniRef90	UniRef90_A0A173SAL3	ERCC4 domain-containing protein	NA
UHGV-0087106_28	eggNOG-mapper	1232453.BAIF02000057_gene1143	NA	NA
UHGV-0087106_28	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0087106_28	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0087106_29	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0087106_29	UniRef90	UniRef90_UPI000EA32791	DnaD domain protein	NA
UHGV-0087106_29	eggNOG-mapper	1391647.AVSV01000022_gene2531	DnaD domain protein	NA
UHGV-0087106_29	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0087106_29	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0087106_30	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0087106_30	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0087106_30	UniRef90	UniRef90_A0A415D524	SF4 helicase domain-containing protein	NA
UHGV-0087106_30	eggNOG-mapper	1256908.HMPREF0373_00663	NA	NA
UHGV-0087106_30	Pfam	PF13481	AAA domain	AAA_25
UHGV-0087106_30	COG	COG0305	Replicative DNA helicase	NA
UHGV-0087106_30	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-0087106_31	PHROG	phrog_7488	NA	unknown function
UHGV-0087106_31	eggNOG-mapper	1073766.G1C4X7_9CAUD	NA	NA
UHGV-0087106_33	Structural annotation	PF17354	NA	NA
UHGV-0087106_34	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0087106_34	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0087106_34	UniRef90	UniRef90_UPI0018A95D39	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0087106_34	eggNOG-mapper	742765.HMPREF9457_03403	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0087106_34	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0087106_34	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0087106_34	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0087106_35	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0087106_35	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0087106_35	UniRef90	UniRef90_A0A396PTY1	Methyltransferase	NA
UHGV-0087106_35	eggNOG-mapper	1214217.ALNF01000014_gene1390	N-4 methylation of cytosine	NA
UHGV-0087106_35	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0087106_35	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0087106_35	COG	COG0863	DNA modification methylase	NA
UHGV-0087106_35	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0087106_36	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0087106_36	UniRef90	UniRef90_A0A373DE70	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0087106_36	eggNOG-mapper	742733.HMPREF9469_01838	sulfate reduction	NA
UHGV-0087106_36	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0087106_36	Structural annotation	PF01507, MF_00063, TIGR02055, COG0175	NA	NA
UHGV-0087106_38	eggNOG-mapper	568816.Acin_1246	NA	NA
UHGV-0087106_40	PHROG	phrog_9822	NA	unknown function
UHGV-0087106_42	Structural annotation	PF06442, MF_01194, NF000331, COG4014	NA	NA
UHGV-0087106_44	PHROG	phrog_25456	NA	unknown function
UHGV-0087106_45	PHROG	phrog_26445	NA	unknown function
UHGV-0087106_45	UniRef90	UniRef90_UPI001EDD5E1E	Trp family transcriptional regulator	NA
UHGV-0087106_45	eggNOG-mapper	742765.HMPREF9457_02112	NA	NA
UHGV-0087106_45	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0087106_45	Structural annotation	PF00196	NA	NA
UHGV-0087106_46	eggNOG-mapper	887325.HMPREF0381_0090	NA	NA
UHGV-0087106_47	PHROG	phrog_15198	NA	unknown function
UHGV-0087106_47	UniRef90	UniRef90_UPI001EDF8197	NA	NA
UHGV-0087106_47	eggNOG-mapper	742723.HMPREF9477_00919	NA	NA
UHGV-0087106_47	Pfam	PF04448	NA	DUF551
UHGV-0087106_47	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0087106_51	PHROG	phrog_22292	NA	unknown function
UHGV-0087106_53	PHROG	phrog_8684	NA	unknown function
UHGV-0087106_53	UniRef90	UniRef90_A0A373MXN9	YopX domain-containing protein	NA
UHGV-0087106_53	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0087106_53	Pfam	PF09643	YopX protein	YopX
UHGV-0087106_53	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0087106_57	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0087106_57	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0087106_57	UniRef90	UniRef90_A0A373KP38	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0087106_57	eggNOG-mapper	1236976.JCM16418_5019	dUTPase	NA
UHGV-0087106_57	Pfam	PF00692	dUTPase	dUTPase
UHGV-0087106_57	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0087106_57	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0087106_61	eggNOG-mapper	397290.C810_01347	NA	NA
UHGV-0087106_61	Structural annotation	PF18267	NA	NA
UHGV-0087106_64	PHROG	phrog_31631	NA	unknown function
UHGV-0087106_65	eggNOG-mapper	1235799.C818_04245	NA	NA
UHGV-0087106_66	Structural annotation	PF13107	NA	NA