UHGV-0087165

Genome information

Genome length 31,089 bps

CDS count 51

Completeness 83.44% (medium-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-0087165
vOTU ID	vOTU-042199
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_184893
BioSample	SAMEA3449378
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.44% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.38
Jumbo phage	No

Genome content
Genome length	31,089 bps
GC content	41.56%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	92.92%
Average CDS length	569.47 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0087165_1	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0087165_1	UniRef90	UniRef90_UPI00156FEF3C	phage tail protein	NA
UHGV-0087165_1	eggNOG-mapper	411470.RUMGNA_02230	NA	NA
UHGV-0087165_1	Structural annotation	PF05113, MF_01370, TIGR01665, COG4379	NA	NA
UHGV-0087165_2	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0087165_2	UniRef90	UniRef90_A7B3U8	Putative phage tail component domain protein	NA
UHGV-0087165_2	eggNOG-mapper	411470.RUMGNA_02229	NA	NA
UHGV-0087165_2	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0087165_2	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0087165_2	COG	COG4722	Phage-related protein YomH	NA
UHGV-0087165_2	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0087165_3	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0087165_3	UniRef90	UniRef90_A0A8B3C0A6	TMP_3 domain-containing protein	NA
UHGV-0087165_3	eggNOG-mapper	411470.RUMGNA_02228	tape measure	NA
UHGV-0087165_3	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0087165_3	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0087165_3	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0087165_3	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0087165_4	PHROG	phrog_706	NA	unknown function
UHGV-0087165_4	UniRef90	UniRef90_A7B3U5	Bacteriophage Gp15 protein	NA
UHGV-0087165_4	eggNOG-mapper	411470.RUMGNA_02226	COG NOG24969 non supervised orthologous group	NA
UHGV-0087165_4	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0087165_4	Structural annotation	PF06854	NA	NA
UHGV-0087165_5	PHROG	phrog_4450	NA	unknown function
UHGV-0087165_5	UniRef90	UniRef90_UPI0018AB083C	AP endonuclease	NA
UHGV-0087165_5	eggNOG-mapper	411470.RUMGNA_02225	NA	NA
UHGV-0087165_5	Pfam	PF20378	NA	DUF6673
UHGV-0087165_5	Structural annotation	PF20378	NA	NA
UHGV-0087165_6	PHROG	phrog_3099	NA	unknown function
UHGV-0087165_6	eggNOG-mapper	411470.RUMGNA_02224	NA	NA
UHGV-0087165_6	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0087165_7	PHROG	phrog_3266	tail completion	connector
UHGV-0087165_7	eggNOG-mapper	411470.RUMGNA_02223	NA	NA
UHGV-0087165_7	Structural annotation	PF12691	NA	NA
UHGV-0087165_8	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0087165_8	UniRef90	UniRef90_UPI001C8E2A32	minor capsid protein	NA
UHGV-0087165_8	eggNOG-mapper	411470.RUMGNA_02222	NA	NA
UHGV-0087165_8	Structural annotation	PF11114	NA	NA
UHGV-0087165_9	PHROG	phrog_3366	NA	unknown function
UHGV-0087165_9	eggNOG-mapper	411470.RUMGNA_02221	NA	NA
UHGV-0087165_9	Pfam	PF20536	NA	DUF6751
UHGV-0087165_9	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0087165_10	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0087165_10	eggNOG-mapper	411462.DORLON_00785	NA	NA
UHGV-0087165_11	eggNOG-mapper	1232443.BAIA02000078_gene28	domain, Protein	NA
UHGV-0087165_11	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0087165_12	PHROG	phrog_422	major head protein	head and packaging
UHGV-0087165_12	eggNOG-mapper	658655.HMPREF0988_02560	NA	NA
UHGV-0087165_12	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0087165_13	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0087165_13	UniRef90	UniRef90_A0A6N2UWT0	Phage minor structural protein GP20	NA
UHGV-0087165_13	eggNOG-mapper	1304866.K413DRAFT_3037	Phage minor structural protein GP20	NA
UHGV-0087165_13	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0087165_13	Structural annotation	PF06810	NA	NA
UHGV-0087165_14	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0087165_14	UniRef90	UniRef90_A0A2N5PKG3	Minor capsid protein	NA
UHGV-0087165_14	eggNOG-mapper	1235799.C818_04219	Phage minor capsid protein 2	NA
UHGV-0087165_14	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0087165_14	COG	COG2369	NA	NA
UHGV-0087165_14	Structural annotation	PF06152	NA	NA
UHGV-0087165_15	PHROG	phrog_533	portal protein	head and packaging
UHGV-0087165_15	UniRef90	UniRef90_A0A2N5PKH7	Phage capsid protein	NA
UHGV-0087165_15	eggNOG-mapper	658655.HMPREF0988_02564	NA	NA
UHGV-0087165_15	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0087165_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0087165_16	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0087165_16	UniRef90	UniRef90_A0A2N5PKF3	Terminase	NA
UHGV-0087165_16	eggNOG-mapper	411470.RUMGNA_02211	NA	NA
UHGV-0087165_16	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0087165_16	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0087165_16	COG	COG1783	Phage terminase large subunit	NA
UHGV-0087165_16	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0087165_17	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0087165_17	UniRef90	UniRef90_A0A2N5PKF8	Transposase	NA
UHGV-0087165_17	eggNOG-mapper	411470.RUMGNA_02210	transposase activity	NA
UHGV-0087165_17	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0087165_17	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0087165_17	Structural annotation	PF07141	NA	NA
UHGV-0087165_19	PHROG	phrog_8680	NA	unknown function
UHGV-0087165_19	UniRef90	UniRef90_UPI001D046250	NA	NA
UHGV-0087165_19	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0087165_19	Pfam	PF14386	NA	DUF4417
UHGV-0087165_19	Structural annotation	PF14386	NA	NA
UHGV-0087165_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0087165_20	UniRef90	UniRef90_A0A7X4ZQ48	RNA polymerase subunit sigma-70	NA
UHGV-0087165_20	eggNOG-mapper	1235792.C808_05360	NA	NA
UHGV-0087165_20	Structural annotation	PF02996	NA	NA
UHGV-0087165_23	UniRef90	UniRef90_A0A2N5PB17	NA	NA
UHGV-0087165_23	Pfam	PF04448	NA	DUF551
UHGV-0087165_23	Structural annotation	NF041588	NA	NA
UHGV-0087165_25	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0087165_25	UniRef90	UniRef90_UPI000467054D	Lar family restriction alleviation protein	NA
UHGV-0087165_25	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0087165_25	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0087165_25	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0087165_26	PHROG	phrog_10714	NA	unknown function
UHGV-0087165_26	eggNOG-mapper	537007.BLAHAN_05460	NA	NA
UHGV-0087165_28	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0087165_28	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0087165_28	UniRef90	UniRef90_A0A8B3BSU1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0087165_28	eggNOG-mapper	742740.HMPREF9474_04317	C-5 cytosine-specific DNA methylase	NA
UHGV-0087165_28	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0087165_28	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0087165_28	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0087165_28	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0087165_29	Structural annotation	NF041290	NA	NA
UHGV-0087165_31	PHROG	phrog_25488	NA	unknown function
UHGV-0087165_31	COG	COG0467	RecA-superfamily ATPase, KaiC/GvpD/RAD55 family	NA
UHGV-0087165_31	Structural annotation	PF12844, PF01316, MF_00535, TIGR00270, COG1476	NA	NA
UHGV-0087165_32	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0087165_32	UniRef90	UniRef90_A0A2N5NVH3	Phage_rep_org_N domain-containing protein	NA
UHGV-0087165_32	eggNOG-mapper	411470.RUMGNA_02197	phage replisome	NA
UHGV-0087165_32	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0087165_32	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0087165_32	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0087165_33	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0087165_33	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0087165_33	UniRef90	UniRef90_A7B3R6	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0087165_33	eggNOG-mapper	411470.RUMGNA_02196	COG COG4570 Holliday junction resolvase	NA
UHGV-0087165_33	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0087165_33	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0087165_33	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0087165_34	PHROG	phrog_7566	NA	unknown function
UHGV-0087165_34	UniRef90	UniRef90_A0A2N5NVH0	Phosphoenolpyruvate carboxykinase	NA
UHGV-0087165_35	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0087165_35	eggNOG-mapper	411470.RUMGNA_02194	NA	NA
UHGV-0087165_35	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0087165_36	PHROG	phrog_14970	NA	unknown function
UHGV-0087165_36	eggNOG-mapper	411470.RUMGNA_02193	double-strand break repair protein	NA
UHGV-0087165_36	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0087165_36	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0087165_37	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0087165_37	UniRef90	UniRef90_A7B3R2	Siphovirus Gp157	NA
UHGV-0087165_37	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0087165_37	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0087165_37	Structural annotation	PF05565	NA	NA
UHGV-0087165_42	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0087165_42	PHROG	phrog_2011	anti-repressor Ant	transcription regulation
UHGV-0087165_42	UniRef90	UniRef90_UPI0004656795	Bro-N domain-containing protein	NA
UHGV-0087165_42	eggNOG-mapper	33035.JPJF01000057_gene3118	BRO family, N-terminal domain	NA
UHGV-0087165_42	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0087165_42	COG	COG3617	Prophage antirepressor	NA
UHGV-0087165_42	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0087165_46	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0087165_46	UniRef90	UniRef90_A0A3E5EKH6	Transcriptional regulator	NA
UHGV-0087165_46	eggNOG-mapper	411470.RUMGNA_03232	NA	NA
UHGV-0087165_46	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0087165_46	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0087165_46	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0087165_46	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0087165_47	UniRef90	UniRef90_A0A2N5PI32	NA	NA
UHGV-0087165_47	eggNOG-mapper	411470.RUMGNA_03231	NA	NA
UHGV-0087165_47	Pfam	PF05339	NA	DUF739
UHGV-0087165_47	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0087165_47	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0087165_48	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0087165_48	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0087165_48	UniRef90	UniRef90_A0A2N5PI64	Transcriptional regulator	NA
UHGV-0087165_48	eggNOG-mapper	411470.RUMGNA_03230	sequence-specific DNA binding	NA
UHGV-0087165_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087165_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0087165_48	Structural annotation	PF01381, NF007257, COG3655	NA	NA
UHGV-0087165_49	PHROG	phrog_87	metallo-protease	other
UHGV-0087165_49	UniRef90	UniRef90_UPI0015EBCD4F	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0087165_49	eggNOG-mapper	411470.RUMGNA_03229	NA	NA
UHGV-0087165_49	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0087165_49	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0087165_50	PHROG	phrog_1847	NA	unknown function
UHGV-0087165_50	UniRef90	UniRef90_A0A3A6GS55	NA	NA
UHGV-0087165_50	eggNOG-mapper	1235792.C808_05258	NA	NA
UHGV-0087165_50	Pfam	PF13250	NA	DUF4041
UHGV-0087165_50	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0087165_50	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-0087165_50	Structural annotation	PF13250	NA	NA
UHGV-0087165_51	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0087165_51	PHROG	phrog_95	integrase	integration and excision
UHGV-0087165_51	UniRef90	UniRef90_A7B6L4	Resolvase, N-terminal domain protein	NA
UHGV-0087165_51	eggNOG-mapper	411470.RUMGNA_03227	Resolvase, N terminal domain	NA
UHGV-0087165_51	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0087165_51	Pfam	PF07508	Recombinase	Recombinase
UHGV-0087165_51	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0087165_51	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0087165_51	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA