UHGV-0087181

Genome information

Genome length 37,240 bps

CDS count 51

Completeness 93.22% (high-quality)

geNomad score 0.9827

Prediction confidence Confident

Genome information
Genome ID	UHGV-0087181
vOTU ID	vOTU-061430
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_170517
BioSample	SAMEA3136673
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.22% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9827
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.86
Jumbo phage	No

Genome content
Genome length	37,240 bps
GC content	44.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	95.19%
Average CDS length	701.94 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0087181_1	KOfam	K18889	mdlA, smdA; ATP-binding cassette, subfamily B, multidrug efflux pump	NA
UHGV-0087181_1	PHROG	phrog_2392	ABC transporter	moron, auxiliary metabolic gene and host takeover
UHGV-0087181_1	UniRef90	UniRef90_A0A174HC79	ABC transporter ATP-binding protein	NA
UHGV-0087181_1	eggNOG-mapper	411459.RUMOBE_02520	NA	NA
UHGV-0087181_1	Pfam	PF00664	ABC transporter transmembrane region	ABC_membrane
UHGV-0087181_1	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-0087181_1	COG	COG1132	ABC-type multidrug transport system, ATPase and permease component	NA
UHGV-0087181_1	Structural annotation	PF00664, PF00005, MF_01005, TIGR02204, COG1132	NA	NA
UHGV-0087181_2	PHROG	phrog_33061	NA	unknown function
UHGV-0087181_2	eggNOG-mapper	411459.RUMOBE_01712	NA	NA
UHGV-0087181_2	Structural annotation	PF19087, NF033202	NA	NA
UHGV-0087181_3	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-0087181_3	PHROG	phrog_5182	endolysin	lysis
UHGV-0087181_3	UniRef90	UniRef90_A0A412EME0	Peptidoglycan-binding protein	NA
UHGV-0087181_3	eggNOG-mapper	411459.RUMOBE_01713	COG COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0087181_3	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0087181_3	Pfam	PF05257	CHAP domain	CHAP
UHGV-0087181_3	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0087181_3	COG	COG1388	LysM repeat	NA
UHGV-0087181_3	Structural annotation	PF08230, PF01832, PF10030, NF038016, TIGR02594, COG1705, COG4322	NA	NA
UHGV-0087181_4	PHROG	phrog_199	holin	lysis
UHGV-0087181_4	UniRef90	UniRef90_A0A174MES9	Phage-related holin (Lysis protein)	NA
UHGV-0087181_4	eggNOG-mapper	411459.RUMOBE_01714	Bacteriophage holin family	NA
UHGV-0087181_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0087181_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0087181_4	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0087181_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0087181_6	eggNOG-mapper	1410650.JHWL01000003_gene2818	NA	NA
UHGV-0087181_8	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0087181_8	UniRef90	UniRef90_A0A3D2D981	Reverse transcriptase domain-containing protein	NA
UHGV-0087181_8	eggNOG-mapper	411459.RUMOBE_01719	reverse transcriptase	NA
UHGV-0087181_8	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0087181_9	PHROG	phrog_17147	NA	unknown function
UHGV-0087181_9	eggNOG-mapper	411459.RUMOBE_01720	NA	NA
UHGV-0087181_10	PHROG	phrog_16573	NA	unknown function
UHGV-0087181_10	eggNOG-mapper	411459.RUMOBE_01721	NA	NA
UHGV-0087181_10	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0087181_10	Structural annotation	PF10651, NF010435	NA	NA
UHGV-0087181_11	PHROG	phrog_11105	NA	unknown function
UHGV-0087181_12	PHROG	phrog_18110	NA	unknown function
UHGV-0087181_12	UniRef90	UniRef90_A0A417CS53	Peptidase S74 domain-containing protein	NA
UHGV-0087181_12	eggNOG-mapper	411459.RUMOBE_01723	Phage minor structural protein	NA
UHGV-0087181_12	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0087181_12	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0087181_12	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0087181_12	COG	COG4926	Phage-related protein	NA
UHGV-0087181_12	Structural annotation	PF14594, PF13884, TIGR01665, COG4926	NA	NA
UHGV-0087181_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0087181_13	UniRef90	UniRef90_A0A174MA27	Phage-related protein	NA
UHGV-0087181_13	eggNOG-mapper	411459.RUMOBE_01724	phage tail	NA
UHGV-0087181_13	Pfam	PF20753	Phage tail C-terminal domain	DUF6558_C
UHGV-0087181_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-0087181_13	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-0087181_14	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0087181_14	UniRef90	UniRef90_A5ZRU7	Phage tail tape measure protein, TP901 family	NA
UHGV-0087181_14	eggNOG-mapper	411459.RUMOBE_01725	Phage tail tape measure protein, TP901 family	NA
UHGV-0087181_14	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0087181_14	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0087181_14	COG	COG5283	Phage-related tail protein	NA
UHGV-0087181_15	PHROG	phrog_25901	NA	unknown function
UHGV-0087181_15	eggNOG-mapper	411459.RUMOBE_01726	NA	NA
UHGV-0087181_15	Structural annotation	PF10109	NA	NA
UHGV-0087181_16	PHROG	phrog_13494	NA	unknown function
UHGV-0087181_16	eggNOG-mapper	411459.RUMOBE_01727	NA	NA
UHGV-0087181_17	PHROG	phrog_88	major tail protein	tail
UHGV-0087181_17	UniRef90	UniRef90_A0A174MD18	Phage major tail protein, phi13 family	NA
UHGV-0087181_17	eggNOG-mapper	411459.RUMOBE_01728	phage major tail protein, phi13 family	NA
UHGV-0087181_17	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0087181_17	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0087181_17	COG	COG5492	NA	NA
UHGV-0087181_17	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0087181_18	PHROG	phrog_78	tail terminator	connector
UHGV-0087181_18	eggNOG-mapper	411468.CLOSCI_01495	NA	NA
UHGV-0087181_18	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0087181_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0087181_19	UniRef90	UniRef90_A0A174MCG9	Phage protein, HK97 gp10 family	NA
UHGV-0087181_19	eggNOG-mapper	411459.RUMOBE_01730	Phage protein, HK97 gp10 family	NA
UHGV-0087181_19	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0087181_19	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0087181_20	PHROG	phrog_25	head closure Hc1	connector
UHGV-0087181_20	UniRef90	UniRef90_A0A174MCN9	Bacteriophage head-tail adaptor	NA
UHGV-0087181_20	eggNOG-mapper	411459.RUMOBE_01731	Phage head-tail adaptor	NA
UHGV-0087181_20	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0087181_20	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0087181_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0087181_21	UniRef90	UniRef90_A0A3R6UCP2	Phage gp6-like head-tail connector protein	NA
UHGV-0087181_21	eggNOG-mapper	411459.RUMOBE_01732	NA	NA
UHGV-0087181_21	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0087181_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0087181_22	UniRef90	UniRef90_A0A174MCH2	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0087181_22	eggNOG-mapper	411459.RUMOBE_01733	phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0087181_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0087181_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0087181_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0087181_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0087181_23	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0087181_23	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0087181_23	UniRef90	UniRef90_A0A174M8P6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0087181_23	eggNOG-mapper	411459.RUMOBE_01734	Belongs to the peptidase S14 family	NA
UHGV-0087181_23	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0087181_23	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0087181_23	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0087181_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-0087181_24	UniRef90	UniRef90_A5ZRV7	Phage portal protein, HK97 family	NA
UHGV-0087181_24	eggNOG-mapper	411459.RUMOBE_01735	NA	NA
UHGV-0087181_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0087181_24	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0087181_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0087181_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0087181_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0087181_25	UniRef90	UniRef90_A5ZRV9	Putative phage terminase, large subunit	NA
UHGV-0087181_25	eggNOG-mapper	411459.RUMOBE_01737	NA	NA
UHGV-0087181_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0087181_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0087181_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0087181_25	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0087181_26	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0087181_26	UniRef90	UniRef90_A5ZRW0	Phage terminase, small subunit, P27 family	NA
UHGV-0087181_26	eggNOG-mapper	411459.RUMOBE_01738	phage terminase, small subunit	NA
UHGV-0087181_26	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0087181_26	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0087181_26	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0087181_26	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0087181_27	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0087181_27	UniRef90	UniRef90_A0A3R7BR43	HNH endonuclease	NA
UHGV-0087181_27	eggNOG-mapper	411459.RUMOBE_01739	NA	NA
UHGV-0087181_28	PHROG	phrog_1558	NA	unknown function
UHGV-0087181_28	UniRef90	UniRef90_I2E8Y5	Gp40	NA
UHGV-0087181_28	eggNOG-mapper	411459.RUMOBE_01740	NA	NA
UHGV-0087181_28	Structural annotation	PF08281, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-0087181_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0087181_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0087181_30	UniRef90	UniRef90_A0A173R0S1	Single-stranded DNA-binding protein	NA
UHGV-0087181_30	eggNOG-mapper	1235798.C817_04744	Single-strand binding protein family	NA
UHGV-0087181_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0087181_30	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0087181_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0087181_30	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0087181_30	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0087181_33	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0087181_33	PHROG	phrog_15982	NA	unknown function
UHGV-0087181_33	UniRef90	UniRef90_A5ZRX0	ParB domain-containing protein	NA
UHGV-0087181_33	eggNOG-mapper	411459.RUMOBE_01748	ParB-like nuclease domain	NA
UHGV-0087181_33	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0087181_33	Pfam	PF12961	NA	DUF3850
UHGV-0087181_33	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0087181_33	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0087181_34	eggNOG-mapper	411459.RUMOBE_01749	NA	NA
UHGV-0087181_35	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0087181_35	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0087181_35	UniRef90	UniRef90_A0A412EMG9	ParA family protein	NA
UHGV-0087181_35	eggNOG-mapper	411459.RUMOBE_01750	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0087181_35	Pfam	PF13614	AAA domain	AAA_31
UHGV-0087181_35	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0087181_35	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0087181_37	PHROG	phrog_824	NA	unknown function
UHGV-0087181_37	UniRef90	UniRef90_A5ZRX5	VRR-NUC domain protein	NA
UHGV-0087181_37	eggNOG-mapper	411459.RUMOBE_01753	VRR-NUC domain	NA
UHGV-0087181_37	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0087181_38	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0087181_38	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0087181_38	eggNOG-mapper	411459.RUMOBE_01756	COG NOG14934 non supervised orthologous group	NA
UHGV-0087181_38	Structural annotation	PF21578	NA	NA
UHGV-0087181_40	PHROG	phrog_31560	NA	unknown function
UHGV-0087181_40	eggNOG-mapper	585501.HMPREF6123_0413	NA	NA
UHGV-0087181_41	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0087181_41	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0087181_41	UniRef90	UniRef90_A0A414EGC7	XRE family transcriptional regulator	NA
UHGV-0087181_41	eggNOG-mapper	883081.HMPREF9698_00677	sequence-specific DNA binding	NA
UHGV-0087181_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087181_41	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0087181_43	Structural annotation	NF010188	NA	NA
UHGV-0087181_44	eggNOG-mapper	411470.RUMGNA_00195	NA	NA
UHGV-0087181_46	PHROG	phrog_34107	NA	unknown function
UHGV-0087181_46	eggNOG-mapper	411459.RUMOBE_01761	NA	NA
UHGV-0087181_50	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0087181_50	UniRef90	UniRef90_A0A417ANN6	XRE family transcriptional regulator	NA
UHGV-0087181_50	eggNOG-mapper	742740.HMPREF9474_04328	Helix-turn-helix XRE-family like proteins	NA
UHGV-0087181_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087181_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0087181_50	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0087181_51	eggNOG-mapper	1235800.C819_02268	NA	NA