UHGV-0087240

Genome information

Genome length 44,742 bps

CDS count 68

Completeness 99.67% (high-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0087240
vOTU ID	vOTU-010074
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_175832
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.67% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.99
Jumbo phage	No

Genome content
Genome length	44,742 bps
GC content	54.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	89.59%
Average CDS length	594.93 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0087240_1	PHROG	phrog_16490	NA	unknown function
UHGV-0087240_1	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0087240_2	eggNOG-mapper	476272.RUMHYD_01953	NA	NA
UHGV-0087240_3	eggNOG-mapper	1408437.JNJN01000043_gene805	NA	NA
UHGV-0087240_5	UniRef90	UniRef90_UPI0004E194C7	LuxR C-terminal-related transcriptional regulator	NA
UHGV-0087240_5	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0087240_5	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-0087240_6	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0087240_6	PHROG	phrog_670	endolysin	lysis
UHGV-0087240_6	UniRef90	UniRef90_A0A417HAK3	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0087240_6	eggNOG-mapper	1408437.JNJN01000008_gene890	Ami_2	NA
UHGV-0087240_6	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0087240_6	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0087240_6	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0087240_7	PHROG	phrog_297	holin	lysis
UHGV-0087240_7	UniRef90	UniRef90_A0A417HVY6	Phage holin	NA
UHGV-0087240_7	eggNOG-mapper	1408437.JNJN01000039_gene392	COG COG5546 Small integral membrane protein	NA
UHGV-0087240_7	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0087240_7	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0087240_7	COG	COG5546	NA	NA
UHGV-0087240_7	Structural annotation	COG5546	NA	NA
UHGV-0087240_8	PHROG	phrog_1863	NA	unknown function
UHGV-0087240_8	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0087240_8	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0087240_10	PHROG	phrog_1382	NA	unknown function
UHGV-0087240_10	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0087240_11	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0087240_11	UniRef90	UniRef90_A0A173R8Z7	Group I intron endonuclease	NA
UHGV-0087240_11	eggNOG-mapper	476272.RUMHYD_01755	GIY-YIG type nucleases (URI domain)	NA
UHGV-0087240_11	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0087240_11	Pfam	PF07460	NUMOD3 motif	NUMOD3
UHGV-0087240_11	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-0087240_11	COG	COG3860	NA	NA
UHGV-0087240_11	Structural annotation	PF19835, PF07460, TIGR01453	NA	NA
UHGV-0087240_12	PHROG	phrog_24451	NA	unknown function
UHGV-0087240_12	eggNOG-mapper	1408437.JNJN01000040_gene189	NA	NA
UHGV-0087240_13	KOfam	K16617	COL13A; collagen type XIII alpha	NA
UHGV-0087240_13	PHROG	phrog_819	tail protein	tail
UHGV-0087240_13	eggNOG-mapper	1408437.JNJN01000030_gene1051	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0087240_13	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0087240_13	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0087240_14	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0087240_14	eggNOG-mapper	1232449.BAHV02000016_gene1816	NA	NA
UHGV-0087240_14	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0087240_15	PHROG	phrog_13046	NA	unknown function
UHGV-0087240_15	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-0087240_15	Structural annotation	PF20387	NA	NA
UHGV-0087240_16	PHROG	phrog_371	major head protein	head and packaging
UHGV-0087240_16	UniRef90	UniRef90_UPI00164C0E21	Mu-like prophage major head subunit gpT family protein	NA
UHGV-0087240_16	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA
UHGV-0087240_16	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0087240_16	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0087240_17	PHROG	phrog_24113	NA	unknown function
UHGV-0087240_17	Structural annotation	PF11133, COG5471	NA	NA
UHGV-0087240_18	PHROG	phrog_35275	NA	unknown function
UHGV-0087240_18	eggNOG-mapper	693746.OBV_23910	NA	NA
UHGV-0087240_21	PHROG	phrog_156	portal protein	head and packaging
UHGV-0087240_21	eggNOG-mapper	1519439.JPJG01000060_gene1886	NA	NA
UHGV-0087240_21	Structural annotation	PF16510, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-0087240_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0087240_22	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0087240_22	UniRef90	UniRef90_A0A417HVY4	PBSX family phage terminase large subunit	NA
UHGV-0087240_22	eggNOG-mapper	445971.ANASTE_00711	Phage terminase, large subunit, PBSX family	NA
UHGV-0087240_22	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0087240_22	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0087240_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0087240_22	Structural annotation	PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0087240_23	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0087240_23	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0087240_23	UniRef90	UniRef90_A0A417HVX5	Terminase small subunit	NA
UHGV-0087240_23	eggNOG-mapper	702450.CUW_0530	Terminase Small Subunit	NA
UHGV-0087240_23	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0087240_23	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0087240_23	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0087240_24	PHROG	phrog_13890	NA	unknown function
UHGV-0087240_24	UniRef90	UniRef90_A0A845MW17	Arc family DNA-binding protein	NA
UHGV-0087240_24	eggNOG-mapper	1507.HMPREF0262_00298	NA	NA
UHGV-0087240_24	Pfam	PF03869	Arc-like DNA binding domain	Arc
UHGV-0087240_24	Structural annotation	PF10723, NF010256, COG4710	NA	NA
UHGV-0087240_25	PHROG	phrog_15863	NA	unknown function
UHGV-0087240_25	UniRef90	UniRef90_A0A417HVZ9	J domain-containing protein	NA
UHGV-0087240_25	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-0087240_25	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0087240_26	Structural annotation	PF17917	NA	NA
UHGV-0087240_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0087240_29	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0087240_29	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0087240_32	PHROG	phrog_25385	NA	unknown function
UHGV-0087240_32	eggNOG-mapper	748224.HMPREF9436_03077	NA	NA
UHGV-0087240_34	PHROG	phrog_774	NA	unknown function
UHGV-0087240_35	PHROG	phrog_2316	NA	unknown function
UHGV-0087240_35	eggNOG-mapper	1157490.EL26_01915	NA	NA
UHGV-0087240_35	Structural annotation	PF16475, MF_00436, NF033216, COG1923	NA	NA
UHGV-0087240_36	PHROG	phrog_474	phosphofructokinase	other
UHGV-0087240_36	UniRef90	UniRef90_A0A2V2FHD6	NA	NA
UHGV-0087240_36	eggNOG-mapper	428125.CLOLEP_01367	NA	NA
UHGV-0087240_36	Pfam	PF19905	NA	DUF6378
UHGV-0087240_36	Structural annotation	PF19905	NA	NA
UHGV-0087240_38	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0087240_38	UniRef90	UniRef90_UPI00189A8D08	Lar family restriction alleviation protein	NA
UHGV-0087240_38	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0087240_38	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0087240_38	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0087240_42	PHROG	phrog_9958	NA	unknown function
UHGV-0087240_42	eggNOG-mapper	658655.HMPREF0988_00873	NA	NA
UHGV-0087240_42	Structural annotation	PF19789	NA	NA
UHGV-0087240_43	PHROG	phrog_3136	NA	unknown function
UHGV-0087240_43	UniRef90	UniRef90_A0A329TS47	ASCH domain-containing protein	NA
UHGV-0087240_43	eggNOG-mapper	693746.OBV_25380	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0087240_43	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0087240_43	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0087240_44	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0087240_44	UniRef90	UniRef90_A0A417JTT5	DNA cytosine methyltransferase	NA
UHGV-0087240_44	eggNOG-mapper	1095750.HMPREF9970_0173	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0087240_44	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0087240_45	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0087240_45	UniRef90	UniRef90_A0A7J2R6L5	DNA cytosine methyltransferase (Fragment)	NA
UHGV-0087240_45	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0087240_45	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0087240_46	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0087240_46	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0087240_46	UniRef90	UniRef90_A0A417H6W1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0087240_46	eggNOG-mapper	697281.Mahau_0558	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0087240_46	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0087240_46	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0087240_47	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0087240_47	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0087240_47	Structural annotation	PF10771, MF_01177, TIGR01610, COG0640	NA	NA
UHGV-0087240_48	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0087240_48	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0087240_48	UniRef90	UniRef90_A0A417H728	Single-stranded DNA-binding protein	NA
UHGV-0087240_48	eggNOG-mapper	1203606.HMPREF1526_02270	Single-stranded DNA-binding protein	NA
UHGV-0087240_48	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0087240_48	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0087240_48	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0087240_48	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0087240_48	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0087240_49	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0087240_49	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0087240_49	UniRef90	UniRef90_A0A845MWL0	HNHc domain-containing protein	NA
UHGV-0087240_49	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-0087240_49	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0087240_50	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0087240_50	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0087240_50	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0087240_50	Structural annotation	PF05772	NA	NA
UHGV-0087240_51	PHROG	phrog_14970	NA	unknown function
UHGV-0087240_51	UniRef90	UniRef90_A0A015RRM9	Rad52/22 double-strand break repair family protein	NA
UHGV-0087240_51	eggNOG-mapper	642492.Clole_0944	double-strand break repair protein	NA
UHGV-0087240_51	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0087240_51	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0087240_54	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0087240_54	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0087240_56	Structural annotation	COG3311	NA	NA
UHGV-0087240_59	UniRef90	UniRef90_A0A2K4ZHX8	Helix-turn-helix domain protein	NA
UHGV-0087240_59	eggNOG-mapper	1235792.C808_03097	Helix-turn-helix XRE-family like proteins	NA
UHGV-0087240_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087240_59	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0087240_60	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0087240_60	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0087240_60	UniRef90	UniRef90_A0A417HS32	XRE family transcriptional regulator	NA
UHGV-0087240_60	eggNOG-mapper	445972.ANACOL_00135	Helix-turn-helix XRE-family like proteins	NA
UHGV-0087240_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087240_60	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0087240_60	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0087240_61	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0087240_61	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0087240_61	UniRef90	UniRef90_A0A7I8D1Y4	Putative P1-type antirepressor - phage associated	NA
UHGV-0087240_61	eggNOG-mapper	1232443.BAIA02000079_gene53	AntA/AntB antirepressor	NA
UHGV-0087240_61	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0087240_61	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0087240_61	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0087240_61	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0087240_62	UniRef90	UniRef90_UPI000AA9C172	copper amine oxidase N-terminal domain-containing protein	NA
UHGV-0087240_62	eggNOG-mapper	509191.AEDB02000076_gene1460	solute-binding protein	NA
UHGV-0087240_62	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-0087240_62	COG	COG2182	Maltose-binding periplasmic protein MalE	NA
UHGV-0087240_63	KOfam	K14059	int; integrase	NA
UHGV-0087240_63	PHROG	phrog_1	integrase	integration and excision
UHGV-0087240_63	UniRef90	UniRef90_A0A417HS27	Site-specific integrase	NA
UHGV-0087240_63	eggNOG-mapper	1321814.HMPREF9089_00905	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0087240_63	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0087240_63	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0087240_63	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0087240_63	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0087240_64	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0087240_64	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0087240_64	UniRef90	UniRef90_A0A845MXW8	Peptidoglycan DD-metalloendopeptidase family protein	NA
UHGV-0087240_64	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-0087240_64	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0087240_64	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0087240_66	UniRef90	UniRef90_A0A7M1RTM1	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0087240_66	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0087240_67	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0087240_68	PHROG	phrog_16490	NA	unknown function
UHGV-0087240_68	eggNOG-mapper	476272.RUMHYD_01954	NA	NA