UHGV-0087360

Genome information

Genome length 28,967 bps

CDS count 46

Completeness 67.33% (medium-quality)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-0087360
vOTU ID	vOTU-041256
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_193113
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.33% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.71
Jumbo phage	No

Genome content
Genome length	28,967 bps
GC content	60.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	92.82%
Average CDS length	587.15 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0087360_1	KOfam	K14059	int; integrase	NA
UHGV-0087360_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0087360_1	UniRef90	UniRef90_A0A3D4D8C4	Integrase	NA
UHGV-0087360_1	eggNOG-mapper	742738.HMPREF9460_00840	Belongs to the 'phage' integrase family	NA
UHGV-0087360_1	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0087360_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0087360_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0087360_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0087360_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0087360_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0087360_2	UniRef90	UniRef90_UPI0009DE69D2	helix-turn-helix domain-containing protein	NA
UHGV-0087360_2	eggNOG-mapper	1292035.H476_1037	sequence-specific DNA binding	NA
UHGV-0087360_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087360_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0087360_2	Structural annotation	PF12844, MF_02017, NF041951, COG1476	NA	NA
UHGV-0087360_4	eggNOG-mapper	742738.HMPREF9460_00848	NA	NA
UHGV-0087360_4	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0087360_7	PHROG	phrog_36399	NA	unknown function
UHGV-0087360_7	eggNOG-mapper	1226322.HMPREF1545_00099	NA	NA
UHGV-0087360_8	PHROG	phrog_8470	NA	unknown function
UHGV-0087360_8	UniRef90	UniRef90_UPI0019580896	PcfJ domain-containing protein	NA
UHGV-0087360_8	eggNOG-mapper	1226322.HMPREF1545_00100	PcfJ-like protein	NA
UHGV-0087360_8	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0087360_8	Structural annotation	PF14284	NA	NA
UHGV-0087360_9	PHROG	phrog_15609	NA	unknown function
UHGV-0087360_9	UniRef90	UniRef90_UPI001C102D5E	NA	NA
UHGV-0087360_9	eggNOG-mapper	693746.OBV_24000	NA	NA
UHGV-0087360_9	Pfam	PF11300	NA	DUF3102
UHGV-0087360_9	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-0087360_9	Structural annotation	PF11300, PF15591, PF07321, NF038070, NF008636, COG4568	NA	NA
UHGV-0087360_10	Structural annotation	PF02559, MF_00667, COG0231	NA	NA
UHGV-0087360_12	PHROG	phrog_3136	NA	unknown function
UHGV-0087360_12	UniRef90	UniRef90_UPI001A9A8D4F	ASCH domain-containing protein	NA
UHGV-0087360_12	eggNOG-mapper	642492.Clole_1416	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0087360_12	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0087360_12	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0087360_13	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0087360_13	UniRef90	UniRef90_UPI000AAF359D	SAM-dependent DNA methyltransferase	NA
UHGV-0087360_13	eggNOG-mapper	1519439.JPJG01000060_gene1874	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0087360_13	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0087360_13	Structural annotation	PF05869, MF_01872, NF000058, COG4123	NA	NA
UHGV-0087360_14	PHROG	phrog_27610	NA	unknown function
UHGV-0087360_16	Pfam	PF04448	NA	DUF551
UHGV-0087360_17	Structural annotation	PF08271	NA	NA
UHGV-0087360_21	PHROG	phrog_38832	NA	unknown function
UHGV-0087360_21	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0087360_21	Structural annotation	PF18300, MF_01549, TIGR02450	NA	NA
UHGV-0087360_25	PHROG	phrog_9467	NA	unknown function
UHGV-0087360_25	UniRef90	UniRef90_UPI001105E329	NA	NA
UHGV-0087360_25	eggNOG-mapper	1519439.JPJG01000060_gene1880	NA	NA
UHGV-0087360_25	Pfam	PF13876	NA	Phage_gp49_66
UHGV-0087360_25	Pfam	PF11195	NA	DUF2829
UHGV-0087360_25	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0087360_25	Structural annotation	PF11195	NA	NA
UHGV-0087360_27	eggNOG-mapper	1519439.JPJG01000060_gene1882	NA	NA
UHGV-0087360_28	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0087360_28	UniRef90	UniRef90_I2E8X7	Gp31	NA
UHGV-0087360_28	eggNOG-mapper	693746.OBV_25240	NA	NA
UHGV-0087360_28	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0087360_29	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0087360_29	eggNOG-mapper	1519439.JPJG01000060_gene1884	DNA-packaging protein gp3	NA
UHGV-0087360_29	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0087360_29	Structural annotation	PF16677	NA	NA
UHGV-0087360_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0087360_30	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0087360_30	UniRef90	UniRef90_A0A3D4D7N6	PBSX family phage terminase large subunit	NA
UHGV-0087360_30	eggNOG-mapper	1519439.JPJG01000060_gene1885	phage Terminase large subunit	NA
UHGV-0087360_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0087360_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0087360_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0087360_30	Structural annotation	PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0087360_31	PHROG	phrog_156	portal protein	head and packaging
UHGV-0087360_31	eggNOG-mapper	1519439.JPJG01000060_gene1886	NA	NA
UHGV-0087360_31	Structural annotation	PF16510, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-0087360_32	PHROG	phrog_30605	NA	unknown function
UHGV-0087360_33	PHROG	phrog_35275	NA	unknown function
UHGV-0087360_33	eggNOG-mapper	1519439.JPJG01000060_gene1888	NA	NA
UHGV-0087360_34	PHROG	phrog_24113	NA	unknown function
UHGV-0087360_34	eggNOG-mapper	1519439.JPJG01000060_gene1889	NA	NA
UHGV-0087360_34	Structural annotation	PF11133, COG5471	NA	NA
UHGV-0087360_35	PHROG	phrog_371	major head protein	head and packaging
UHGV-0087360_35	UniRef90	UniRef90_R6TFU9	Mu-like_gpT domain-containing protein	NA
UHGV-0087360_35	eggNOG-mapper	1519439.JPJG01000060_gene1890	NA	NA
UHGV-0087360_35	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0087360_36	PHROG	phrog_12105	NA	unknown function
UHGV-0087360_36	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-0087360_37	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0087360_37	PHROG	phrog_819	tail protein	tail
UHGV-0087360_37	UniRef90	UniRef90_UPI00068BE71D	collagen-like protein	NA
UHGV-0087360_37	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0087360_37	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0087360_37	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0087360_37	Structural annotation	PF10651, NF033814	NA	NA
UHGV-0087360_41	PHROG	phrog_27545	NA	unknown function
UHGV-0087360_41	UniRef90	UniRef90_A0A2V2GQB6	Chitin-binding type-3 domain-containing protein	NA
UHGV-0087360_41	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0087360_41	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0087360_41	Structural annotation	PF16170	NA	NA
UHGV-0087360_42	PHROG	phrog_9428	NA	unknown function
UHGV-0087360_42	UniRef90	UniRef90_A0A6I2RCP8	Serine/threonine protein kinase	NA
UHGV-0087360_42	eggNOG-mapper	1519439.JPJG01000059_gene1948	NA	NA
UHGV-0087360_44	PHROG	phrog_13256	NA	unknown function
UHGV-0087360_44	eggNOG-mapper	1519439.JPJG01000060_gene1898	NA	NA
UHGV-0087360_45	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0087360_45	PHROG	phrog_670	endolysin	lysis
UHGV-0087360_45	UniRef90	UniRef90_A0A352RPM1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0087360_45	eggNOG-mapper	1519439.JPJG01000060_gene1899	Ami_2	NA
UHGV-0087360_45	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0087360_45	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0087360_45	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0087360_46	PHROG	phrog_1899	NA	unknown function
UHGV-0087360_46	eggNOG-mapper	1226322.HMPREF1545_00783	Chaperone of endosialidase	NA