UHGV-0087438

Genome information

Genome length 33,137 bps

CDS count 57

Completeness 94.80% (high-quality)

geNomad score 0.9752

Prediction confidence Confident

Genome information
Genome ID	UHGV-0087438
vOTU ID	vOTU-060941
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_189108
BioSample	SAMEA3449345
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.80% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9752
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.31
Jumbo phage	No

Genome content
Genome length	33,137 bps
GC content	53.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	94.40%
Average CDS length	558.16 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0087438_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0087438_1	PHROG	phrog_5182	endolysin	lysis
UHGV-0087438_1	UniRef90	UniRef90_A0A2U1B8V1	Putative peptidoglycan binding protein (Fragment)	NA
UHGV-0087438_1	eggNOG-mapper	1408303.JNJJ01000024_gene2989	Ami_2	NA
UHGV-0087438_1	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0087438_1	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0087438_1	Structural annotation	PF09992, COG4632, COG5632	NA	NA
UHGV-0087438_3	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0087438_5	KOfam	K13884	MARCO; macrophage receptor with collagenous structure	NA
UHGV-0087438_5	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0087438_5	UniRef90	UniRef90_A0A1C6JA86	Collagen triple helix repeat (20 copies)	NA
UHGV-0087438_5	eggNOG-mapper	1297617.JPJD01000099_gene2171	Collagen triple helix repeat protein	NA
UHGV-0087438_5	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0087438_5	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0087438_7	PHROG	phrog_24451	NA	unknown function
UHGV-0087438_7	eggNOG-mapper	1408437.JNJN01000040_gene189	NA	NA
UHGV-0087438_8	eggNOG-mapper	2754.EH55_00535	NA	NA
UHGV-0087438_8	Structural annotation	PF20086, TIGR04362	NA	NA
UHGV-0087438_9	PHROG	phrog_32744	NA	unknown function
UHGV-0087438_9	eggNOG-mapper	1203606.HMPREF1526_00968	NA	NA
UHGV-0087438_9	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0087438_10	eggNOG-mapper	411902.CLOBOL_00125	NA	NA
UHGV-0087438_10	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0087438_11	PHROG	phrog_23464	NA	unknown function
UHGV-0087438_11	UniRef90	UniRef90_A0A1I6EGT7	Phage-related minor tail protein	NA
UHGV-0087438_11	eggNOG-mapper	926561.KB900622_gene636	phage tail tape measure protein	NA
UHGV-0087438_11	COG	COG5283	Phage-related tail protein	NA
UHGV-0087438_11	Structural annotation	COG5280	NA	NA
UHGV-0087438_12	PHROG	phrog_709	NA	unknown function
UHGV-0087438_12	eggNOG-mapper	1226322.HMPREF1545_00122	NA	NA
UHGV-0087438_12	Structural annotation	PF11836	NA	NA
UHGV-0087438_13	PHROG	phrog_88	major tail protein	tail
UHGV-0087438_13	UniRef90	UniRef90_UPI001031AF27	phage tail protein	NA
UHGV-0087438_13	eggNOG-mapper	1226322.HMPREF1545_00121	phage major tail protein, phi13 family	NA
UHGV-0087438_13	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0087438_13	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0087438_13	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0087438_14	PHROG	phrog_78	tail terminator	connector
UHGV-0087438_14	UniRef90	UniRef90_U2SBX3	HTH merR-type domain-containing protein	NA
UHGV-0087438_14	eggNOG-mapper	411471.SUBVAR_05856	NA	NA
UHGV-0087438_14	Structural annotation	PF20765	NA	NA
UHGV-0087438_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0087438_15	UniRef90	UniRef90_UPI001D00FAFD	HK97 gp10 family phage protein	NA
UHGV-0087438_15	eggNOG-mapper	411471.SUBVAR_05855	NA	NA
UHGV-0087438_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0087438_15	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0087438_16	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0087438_16	UniRef90	UniRef90_A0A8J6P6R3	Phage head-tail adapter protein	NA
UHGV-0087438_16	eggNOG-mapper	411471.SUBVAR_05854	NA	NA
UHGV-0087438_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0087438_17	PHROG	phrog_5223	neck protein	connector
UHGV-0087438_17	UniRef90	UniRef90_UPI00073F29ED	head-tail connector protein	NA
UHGV-0087438_17	eggNOG-mapper	411471.SUBVAR_05853	NA	NA
UHGV-0087438_17	Structural annotation	TIGR01560	NA	NA
UHGV-0087438_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-0087438_18	UniRef90	UniRef90_UPI00073E62C9	phage major capsid protein	NA
UHGV-0087438_18	eggNOG-mapper	626523.GCWU000342_01025	Phage capsid family	NA
UHGV-0087438_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0087438_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0087438_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0087438_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0087438_19	KOfam	K06904	NA	NA
UHGV-0087438_19	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0087438_19	UniRef90	UniRef90_UPI00073E7D9A	HK97 family phage prohead protease	NA
UHGV-0087438_19	eggNOG-mapper	742740.HMPREF9474_04305	Phage prohead protease, HK97 family	NA
UHGV-0087438_19	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0087438_19	COG	COG3740	Phage head maturation protease	NA
UHGV-0087438_19	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0087438_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-0087438_20	UniRef90	UniRef90_UPI00073E8ED5	phage portal protein	NA
UHGV-0087438_20	eggNOG-mapper	411471.SUBVAR_05850	Phage portal protein	NA
UHGV-0087438_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0087438_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0087438_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0087438_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0087438_21	UniRef90	UniRef90_UPI00073E3369	terminase large subunit	NA
UHGV-0087438_21	eggNOG-mapper	411471.SUBVAR_05848	large subunit	NA
UHGV-0087438_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0087438_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0087438_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0087438_21	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0087438_22	PHROG	phrog_1066	NA	unknown function
UHGV-0087438_22	UniRef90	UniRef90_A0A0D0SQQ8	NA	NA
UHGV-0087438_22	eggNOG-mapper	742740.HMPREF9474_04308	NA	NA
UHGV-0087438_23	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0087438_23	UniRef90	UniRef90_UPI00073EFDD7	HNH endonuclease	NA
UHGV-0087438_23	eggNOG-mapper	887929.HMP0721_1270	HNH nucleases	NA
UHGV-0087438_23	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0087438_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0087438_25	UniRef90	UniRef90_A0A1C6J963	Helix-turn-helix	NA
UHGV-0087438_25	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0087438_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087438_25	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0087438_26	AcrCatalog	cluster_32378	NA	NA
UHGV-0087438_26	Pfam	PF02489	Herpesvirus glycoprotein H main domain	Herpes_glycop_H
UHGV-0087438_28	UniRef90	UniRef90_A0A2U1BEG9	Helix-turn-helix protein	NA
UHGV-0087438_28	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0087438_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087438_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0087438_28	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0087438_30	PHROG	phrog_38832	NA	unknown function
UHGV-0087438_30	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0087438_32	PHROG	phrog_874	NA	unknown function
UHGV-0087438_32	UniRef90	UniRef90_A0A4P6LRJ9	ASCH domain-containing protein	NA
UHGV-0087438_32	eggNOG-mapper	1232449.BAHV02000016_gene1832	NA	NA
UHGV-0087438_32	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0087438_33	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0087438_33	UniRef90	UniRef90_UPI00137A1EA0	DNA cytosine methyltransferase	NA
UHGV-0087438_33	eggNOG-mapper	742733.HMPREF9469_01835	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0087438_33	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0087438_33	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0087438_35	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0087438_35	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0087438_35	UniRef90	UniRef90_G9RR13	PAPS_reduct domain-containing protein	NA
UHGV-0087438_35	eggNOG-mapper	665956.HMPREF1032_02557	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0087438_35	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0087438_35	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0087438_35	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0087438_37	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0087438_37	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0087438_37	UniRef90	UniRef90_A0A7X8IB41	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0087438_37	eggNOG-mapper	469604.HMPREF0946_00819	NA	NA
UHGV-0087438_37	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0087438_37	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0087438_39	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0087438_39	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0087438_39	UniRef90	UniRef90_UPI0009529D7E	AAA family ATPase	NA
UHGV-0087438_39	eggNOG-mapper	742738.HMPREF9460_00852	Participates in initiation and elongation during chromosome replication	NA
UHGV-0087438_39	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0087438_39	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0087438_39	COG	COG0305	Replicative DNA helicase	NA
UHGV-0087438_39	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0087438_40	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0087438_40	UniRef90	UniRef90_UPI00095201A6	NA	NA
UHGV-0087438_40	eggNOG-mapper	1235790.C805_00030	NA	NA
UHGV-0087438_40	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0087438_40	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0087438_41	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0087438_41	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0087438_41	UniRef90	UniRef90_UPI000951721D	recombinase RecT	NA
UHGV-0087438_41	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0087438_41	Pfam	PF03837	RecT family	RecT
UHGV-0087438_41	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0087438_41	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0087438_41	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0087438_42	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0087438_42	UniRef90	UniRef90_UPI000952E6A4	YqaJ viral recombinase family protein	NA
UHGV-0087438_42	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-0087438_42	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0087438_42	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0087438_42	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0087438_42	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0087438_45	UniRef90	UniRef90_UPI000950FB7D	helix-turn-helix domain-containing protein	NA
UHGV-0087438_46	PHROG	phrog_4433	NA	unknown function
UHGV-0087438_46	UniRef90	UniRef90_UPI00045B9709	collagen-like protein	NA
UHGV-0087438_46	eggNOG-mapper	269482.Bcep1808_1157	Flagellar Assembly Protein A	NA
UHGV-0087438_46	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0087438_46	Structural annotation	NF007410	NA	NA
UHGV-0087438_48	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0087438_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0087438_48	UniRef90	UniRef90_A0A223HYZ7	Helix-turn-helix family protein	NA
UHGV-0087438_48	eggNOG-mapper	397290.C810_01482	Helix-turn-helix XRE-family like proteins	NA
UHGV-0087438_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087438_48	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0087438_49	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0087438_49	UniRef90	UniRef90_A0A2U1BEF0	Helix-turn-helix protein	NA
UHGV-0087438_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087438_49	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0087438_49	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0087438_50	PHROG	phrog_22529	NA	unknown function
UHGV-0087438_50	UniRef90	UniRef90_UPI001C127ACE	3D domain-containing protein	NA
UHGV-0087438_50	eggNOG-mapper	478749.BRYFOR_09946	3D domain protein	NA
UHGV-0087438_50	Pfam	PF06725	3D domain	3D
UHGV-0087438_50	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0087438_50	Structural annotation	PF06725, MF_02071, NF040675, COG3584	NA	NA
UHGV-0087438_51	UniRef90	UniRef90_A0A2U1BEC2	HTH cro/C1-type domain-containing protein	NA
UHGV-0087438_51	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-0087438_52	UniRef90	UniRef90_UPI0003C0D8C8	helix-turn-helix transcriptional regulator	NA
UHGV-0087438_52	eggNOG-mapper	1430331.EP10_02425	NA	NA
UHGV-0087438_52	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0087438_53	UniRef90	UniRef90_A0A1S8R5X2	Helix-turn-helix protein	NA
UHGV-0087438_53	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0087438_53	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0087438_56	PHROG	phrog_37750	NA	unknown function
UHGV-0087438_56	eggNOG-mapper	1087481.AGFX01000037_gene4346	NA	NA
UHGV-0087438_56	Structural annotation	PF16146, MF_00867, COG5007	NA	NA
UHGV-0087438_57	KOfam	K14059	int; integrase	NA
UHGV-0087438_57	PHROG	phrog_1	integrase	integration and excision
UHGV-0087438_57	UniRef90	UniRef90_A0A2U1BEI0	Integrase	NA
UHGV-0087438_57	eggNOG-mapper	742738.HMPREF9460_01344	Phage integrase family	NA
UHGV-0087438_57	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0087438_57	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0087438_57	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA