UHGV-0087450

Genome information

Genome length 36,299 bps

CDS count 49

Completeness 96.74% (high-quality)

geNomad score 0.9747

Prediction confidence Confident

Genome information
Genome ID	UHGV-0087450
vOTU ID	vOTU-070978
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_178612
BioSample	SAMEA3449373
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.74% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9747
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.81
Jumbo phage	No

Genome content
Genome length	36,299 bps
GC content	38.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	93.64%
Average CDS length	702.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0087450_1	UniRef90	UniRef90_UPI000B3A52A0	Ig domain-containing protein	NA
UHGV-0087450_1	eggNOG-mapper	1203606.HMPREF1526_00838	domain protein	NA
UHGV-0087450_1	Pfam	PF12171	Zinc-finger double-stranded RNA-binding	zf-C2H2_jaz
UHGV-0087450_1	COG	COG0737	2',3'-cyclic-nucleotide 2'-phosphodiesterase/5'- or 3'-nucleotidase, 5'-nucleotidase family	NA
UHGV-0087450_2	UniRef90	UniRef90_A0A1Y4R001	HTH tetR-type domain-containing protein	NA
UHGV-0087450_2	eggNOG-mapper	903814.ELI_0508	Bacterial regulatory proteins, tetR family	NA
UHGV-0087450_2	COG	COG1309	DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA	NA
UHGV-0087450_4	KOfam	K07486	K07486; transposase	NA
UHGV-0087450_4	PHROG	phrog_2199	transposase	integration and excision
UHGV-0087450_4	UniRef90	UniRef90_B7CB11	Transposase, IS116/IS110/IS902 family	NA
UHGV-0087450_4	eggNOG-mapper	518637.EUBIFOR_01382	Transposase, IS116 IS110 IS902 family	NA
UHGV-0087450_4	Pfam	PF01548	Transposase	DEDD_Tnp_IS110
UHGV-0087450_4	Pfam	PF02371	Transposase IS116/IS110/IS902 family	Transposase_20
UHGV-0087450_4	NCBIFam	NF033542.1	IS110 family transposase	NA
UHGV-0087450_4	COG	COG3547	Transposase	NA
UHGV-0087450_4	Structural annotation	PF01548, PF02371, MF_00651, NF033542, COG3547	NA	NA
UHGV-0087450_5	KOfam	K07493	K07493; putative transposase	NA
UHGV-0087450_5	PHROG	phrog_2331	transposase	integration and excision
UHGV-0087450_5	UniRef90	UniRef90_A0A380LK96	Mutator family transposase	NA
UHGV-0087450_5	eggNOG-mapper	1123313.ATUT01000032_gene1896	COG COG3328 Transposase and inactivated derivatives	NA
UHGV-0087450_5	Pfam	PF00872	Transposase, Mutator family	Transposase_mut
UHGV-0087450_5	NCBIFam	NF033543.1	IS256 family transposase	NA
UHGV-0087450_5	COG	COG3328	Transposase (or an inactivated derivative)	NA
UHGV-0087450_5	Structural annotation	PF00872, NF033543, COG3328	NA	NA
UHGV-0087450_6	KOfam	K14059	int; integrase	NA
UHGV-0087450_6	PHROG	phrog_1	integrase	integration and excision
UHGV-0087450_6	UniRef90	UniRef90_A0A3N0I182	Site-specific integrase	NA
UHGV-0087450_6	eggNOG-mapper	411471.SUBVAR_04379	Belongs to the 'phage' integrase family	NA
UHGV-0087450_6	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0087450_6	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0087450_6	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0087450_7	PHROG	phrog_4431	NA	unknown function
UHGV-0087450_7	UniRef90	UniRef90_UPI001924AC1A	SHOCT domain-containing protein	NA
UHGV-0087450_7	eggNOG-mapper	1449343.JQLQ01000002_gene1561	NA	NA
UHGV-0087450_7	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0087450_7	Structural annotation	PF05120	NA	NA
UHGV-0087450_8	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0087450_8	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0087450_8	UniRef90	UniRef90_D4JEI4	Predicted transcriptional regulator	NA
UHGV-0087450_8	eggNOG-mapper	706433.HMPREF9430_01295	NA	NA
UHGV-0087450_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087450_8	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0087450_8	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0087450_8	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0087450_9	UniRef90	UniRef90_A0A374RH67	NA	NA
UHGV-0087450_9	eggNOG-mapper	257314.LJ_1456	NA	NA
UHGV-0087450_9	Pfam	PF05339	NA	DUF739
UHGV-0087450_9	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0087450_9	Structural annotation	PF05339, MF_00535, NF002773, COG3655	NA	NA
UHGV-0087450_12	PHROG	phrog_6058	NA	unknown function
UHGV-0087450_12	UniRef90	UniRef90_A0A0V8QBN7	Histone-lysine N-methyltransferase	NA
UHGV-0087450_12	eggNOG-mapper	658088.HMPREF0987_00666	NA	NA
UHGV-0087450_12	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0087450_15	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0087450_15	PHROG	phrog_1499	NA	unknown function
UHGV-0087450_15	UniRef90	UniRef90_A0A1Y4LTU2	Chromosome segregation protein SMC	NA
UHGV-0087450_15	eggNOG-mapper	552396.HMPREF0863_02439	AAA ATPase domain	NA
UHGV-0087450_15	Pfam	PF13476	AAA domain	AAA_23
UHGV-0087450_15	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0087450_15	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0087450_16	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0087450_16	UniRef90	UniRef90_UPI0009337475	ATP-binding protein	NA
UHGV-0087450_16	eggNOG-mapper	999413.HMPREF1094_00235	AAA domain	NA
UHGV-0087450_16	Pfam	PF13479	AAA domain	AAA_24
UHGV-0087450_16	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0087450_17	PHROG	phrog_2698	NA	unknown function
UHGV-0087450_17	UniRef90	UniRef90_A0A1Y4QVI7	NA	NA
UHGV-0087450_17	eggNOG-mapper	1232449.BAHV02000008_gene619	NA	NA
UHGV-0087450_18	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0087450_18	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0087450_18	UniRef90	UniRef90_A0A1Y4LTU1	DEAD/DEAH box helicase	NA
UHGV-0087450_18	eggNOG-mapper	552396.HMPREF0863_02436	helicase superfamily c-terminal domain	NA
UHGV-0087450_18	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0087450_18	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0087450_18	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0087450_18	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0087450_18	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0087450_19	Structural annotation	PF19005	NA	NA
UHGV-0087450_20	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-0087450_20	eggNOG-mapper	552396.HMPREF0863_02432	NA	NA
UHGV-0087450_21	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0087450_21	UniRef90	UniRef90_A0A1Y4LVX7	HNHc domain-containing protein	NA
UHGV-0087450_21	eggNOG-mapper	999413.HMPREF1094_00227	HNH endonuclease	NA
UHGV-0087450_21	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0087450_21	Structural annotation	PF13392	NA	NA
UHGV-0087450_22	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0087450_22	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0087450_22	UniRef90	UniRef90_A0A1Y4LY87	DNA primase	NA
UHGV-0087450_22	eggNOG-mapper	552396.HMPREF0863_02435	Primase C terminal 2 (PriCT-2)	NA
UHGV-0087450_22	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0087450_22	Pfam	PF13481	AAA domain	AAA_25
UHGV-0087450_22	COG	COG3598	RecA-family ATPase	NA
UHGV-0087450_22	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0087450_24	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0087450_24	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0087450_24	UniRef90	UniRef90_A0A3D4L3X9	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0087450_24	eggNOG-mapper	1232449.BAHV02000008_gene624	Endodeoxyribonuclease RusA	NA
UHGV-0087450_24	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0087450_24	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0087450_24	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0087450_28	Structural annotation	PF01920, TIGR01636	NA	NA
UHGV-0087450_29	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0087450_29	UniRef90	UniRef90_UPI001C3AE805	Terminase	NA
UHGV-0087450_29	eggNOG-mapper	1232449.BAHV02000008_gene626	DNA packaging	NA
UHGV-0087450_29	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0087450_29	COG	COG5484	NA	NA
UHGV-0087450_29	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0087450_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0087450_30	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0087450_30	UniRef90	UniRef90_A0A8E3MVD8	PBSX family phage terminase large subunit	NA
UHGV-0087450_30	eggNOG-mapper	411902.CLOBOL_00139	Phage terminase, large subunit, PBSX family	NA
UHGV-0087450_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0087450_30	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0087450_31	PHROG	phrog_533	portal protein	head and packaging
UHGV-0087450_31	UniRef90	UniRef90_A0A8E3MVT4	Phage portal protein	NA
UHGV-0087450_31	eggNOG-mapper	999413.HMPREF1094_00220	phage minor capsid protein	NA
UHGV-0087450_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0087450_31	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0087450_32	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0087450_32	UniRef90	UniRef90_UPI001C3BD1F2	Phage minor capsid protein	NA
UHGV-0087450_32	eggNOG-mapper	411461.DORFOR_01164	NA	NA
UHGV-0087450_32	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0087450_32	COG	COG2369	NA	NA
UHGV-0087450_34	eggNOG-mapper	1232449.BAHV02000010_gene2712	NA	NA
UHGV-0087450_36	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0087450_36	UniRef90	UniRef90_UPI001EEEEE4A	phage scaffolding protein	NA
UHGV-0087450_37	PHROG	phrog_10	major head protein	head and packaging
UHGV-0087450_37	UniRef90	UniRef90_UPI001C3B6033	Phage major capsid protein	NA
UHGV-0087450_37	eggNOG-mapper	1449050.JNLE01000003_gene3889	Phage capsid family	NA
UHGV-0087450_37	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0087450_37	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0087450_37	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0087450_37	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0087450_38	UniRef90	UniRef90_UPI0009315F56	head fiber protein	NA
UHGV-0087450_39	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0087450_40	PHROG	phrog_3366	NA	unknown function
UHGV-0087450_40	Pfam	PF20536	NA	DUF6751
UHGV-0087450_40	Structural annotation	PF20536	NA	NA
UHGV-0087450_41	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0087450_41	UniRef90	UniRef90_UPI000930E2B9	minor capsid protein	NA
UHGV-0087450_41	eggNOG-mapper	411461.DORFOR_01170	Minor capsid protein	NA
UHGV-0087450_41	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0087450_41	Structural annotation	PF11114	NA	NA
UHGV-0087450_42	PHROG	phrog_3266	tail completion	connector
UHGV-0087450_42	eggNOG-mapper	428127.EUBDOL_01219	NA	NA
UHGV-0087450_42	Structural annotation	PF12691	NA	NA
UHGV-0087450_43	PHROG	phrog_820	major tail protein	tail
UHGV-0087450_43	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0087450_43	eggNOG-mapper	411461.DORFOR_01172	NA	NA
UHGV-0087450_43	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0087450_44	Pfam	PF20378	NA	DUF6673
UHGV-0087450_44	Structural annotation	PF20378	NA	NA
UHGV-0087450_45	PHROG	phrog_706	NA	unknown function
UHGV-0087450_45	UniRef90	UniRef90_A0A1M6B1I0	Bacteriophage Gp15 protein	NA
UHGV-0087450_45	eggNOG-mapper	411490.ANACAC_00711	Bacteriophage Gp15 protein	NA
UHGV-0087450_45	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0087450_45	Structural annotation	PF06854	NA	NA
UHGV-0087450_47	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0087450_47	UniRef90	UniRef90_UPI001BC868E1	tape measure protein	NA
UHGV-0087450_47	eggNOG-mapper	411470.RUMGNA_02228	tape measure	NA
UHGV-0087450_47	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0087450_47	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0087450_47	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0087450_48	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0087450_48	UniRef90	UniRef90_A0A414S2W8	Phage tail protein	NA
UHGV-0087450_48	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-0087450_48	COG	COG4722	Phage-related protein YomH	NA
UHGV-0087450_48	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0087450_49	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0087450_49	UniRef90	UniRef90_A0A1Y4GWP8	Prophage_tail domain-containing protein	NA
UHGV-0087450_49	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0087450_49	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0087450_49	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0087450_49	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0087450_49	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA