UHGV-0087586

Genome information

Genome length 34,622 bps

CDS count 47

Completeness 80.64% (medium-quality)

geNomad score 0.9715

Prediction confidence Confident

Genome information
Genome ID	UHGV-0087586
vOTU ID	vOTU-025167
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_176253
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.64% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9715
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.88
Jumbo phage	No

Genome content
Genome length	34,622 bps
GC content	30.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	93.28%
Average CDS length	688.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0087586_2	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0087586_2	UniRef90	UniRef90_UPI001E64C17F	P27 family phage terminase small subunit	NA
UHGV-0087586_2	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0087586_2	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0087586_2	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0087586_3	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0087586_3	UniRef90	UniRef90_UPI0011061D03	terminase large subunit	NA
UHGV-0087586_3	eggNOG-mapper	1211817.CCAT010000053_gene2129	Phage Terminase	NA
UHGV-0087586_3	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0087586_3	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0087586_3	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0087586_3	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0087586_4	PHROG	phrog_12	portal protein	head and packaging
UHGV-0087586_4	UniRef90	UniRef90_UPI00148519DF	phage portal protein	NA
UHGV-0087586_4	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0087586_4	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0087586_4	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0087586_4	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0087586_4	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0087586_5	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0087586_5	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0087586_5	UniRef90	UniRef90_UPI00110724D9	Clp protease ClpP	NA
UHGV-0087586_5	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0087586_5	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0087586_5	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0087586_5	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0087586_6	PHROG	phrog_10	major head protein	head and packaging
UHGV-0087586_6	UniRef90	UniRef90_UPI001107332E	phage major capsid protein	NA
UHGV-0087586_6	eggNOG-mapper	349161.Dred_2604	Phage capsid family	NA
UHGV-0087586_6	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0087586_6	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0087586_6	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0087586_6	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0087586_7	PHROG	phrog_749	NA	unknown function
UHGV-0087586_7	UniRef90	UniRef90_A0A1I3QJG6	Phage gp6-like head-tail connector protein	NA
UHGV-0087586_7	eggNOG-mapper	1211817.CCAT010000008_gene943	NA	NA
UHGV-0087586_8	PHROG	phrog_5635	head-tail adaptor	connector
UHGV-0087586_8	UniRef90	UniRef90_UPI0011070497	phage head closure protein	NA
UHGV-0087586_8	eggNOG-mapper	1027396.LMOSA_21431	NA	NA
UHGV-0087586_8	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0087586_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0087586_9	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0087586_10	PHROG	phrog_5509	neck protein	connector
UHGV-0087586_10	eggNOG-mapper	1123315.AUIP01000014_gene1956	NA	NA
UHGV-0087586_10	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0087586_11	UniRef90	UniRef90_A0A316S919	Phage tail protein	NA
UHGV-0087586_11	eggNOG-mapper	1384484.AEQU_1175	NA	NA
UHGV-0087586_11	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0087586_12	eggNOG-mapper	1121866.AUGK01000006_gene886	NA	NA
UHGV-0087586_13	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0087586_13	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0087586_13	UniRef90	UniRef90_UPI0011074901	phage tail tape measure protein	NA
UHGV-0087586_13	eggNOG-mapper	1536774.H70357_10670	minor tail protein	NA
UHGV-0087586_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0087586_13	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0087586_13	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0087586_14	PHROG	phrog_559	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0087586_14	UniRef90	UniRef90_UPI0003F525D5	NA	NA
UHGV-0087586_14	eggNOG-mapper	1129192.A0A0E3D988_9CAUD	regulation of transcription, DNA-dependent	NA
UHGV-0087586_14	Structural annotation	PF04480, PF05265, PF14311, TIGR00632, COG3727	NA	NA
UHGV-0087586_16	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0087586_16	UniRef90	UniRef90_A0A1C5VG03	Phage-related protein	NA
UHGV-0087586_16	eggNOG-mapper	573061.Clocel_3532	tail component	NA
UHGV-0087586_16	COG	COG4722	Phage-related protein YomH	NA
UHGV-0087586_16	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0087586_17	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0087586_17	PHROG	phrog_7043	tail protein	tail
UHGV-0087586_17	UniRef90	UniRef90_UPI0018AA7BAA	SH3 domain-containing protein	NA
UHGV-0087586_17	eggNOG-mapper	1292035.H476_1004	Prophage endopeptidase tail	NA
UHGV-0087586_17	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0087586_17	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0087586_17	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0087586_17	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0087586_17	COG	COG4926	Phage-related protein	NA
UHGV-0087586_17	Structural annotation	PF14594, PF08239, PF19081, PF13229, TIGR01665, NF040678, COG4926, COG4991, COG0791	NA	NA
UHGV-0087586_18	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0087586_18	PHROG	phrog_8460	tail fiber protein	tail
UHGV-0087586_18	UniRef90	UniRef90_UPI0018AA31C6	SGNH/GDSL hydrolase family protein	NA
UHGV-0087586_18	eggNOG-mapper	1484479.DI14_04675	GDSL-like Lipase/Acylhydrolase	NA
UHGV-0087586_18	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0087586_18	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0087586_18	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0087586_20	PHROG	phrog_1193	hemolysin	other
UHGV-0087586_20	UniRef90	UniRef90_UPI0018AB0AA6	hemolysin XhlA family protein	NA
UHGV-0087586_20	eggNOG-mapper	1415775.U729_2619	Haemolysin XhlA	NA
UHGV-0087586_20	Pfam	PF10779	Haemolysin XhlA	XhlA
UHGV-0087586_21	PHROG	phrog_1129	holin	lysis
UHGV-0087586_21	UniRef90	UniRef90_A0A0B3VH17	Holin	NA
UHGV-0087586_21	eggNOG-mapper	702450.CUW_0551	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0087586_21	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0087586_21	Structural annotation	PF06946	NA	NA
UHGV-0087586_22	UniRef90	UniRef90_UPI0018AA2066	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0087586_22	eggNOG-mapper	441769.ABFU01000059_gene378	sh3 domain protein	NA
UHGV-0087586_22	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0087586_22	Pfam	PF19087	NA	DUF5776
UHGV-0087586_22	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0087586_22	Structural annotation	PF01510, PF13457, MF_04111, NF008758, NF033202, COG4991, COG3023	NA	NA
UHGV-0087586_23	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0087586_23	PHROG	phrog_95	integrase	integration and excision
UHGV-0087586_23	UniRef90	UniRef90_UPI001D16F150	recombinase family protein	NA
UHGV-0087586_23	eggNOG-mapper	1151292.QEW_2304	resolvase	NA
UHGV-0087586_23	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0087586_23	Pfam	PF07508	Recombinase	Recombinase
UHGV-0087586_23	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0087586_23	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0087586_23	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0087586_24	PHROG	phrog_28892	NA	unknown function
UHGV-0087586_24	UniRef90	UniRef90_B1V2Q3	Putative lipoprotein	NA
UHGV-0087586_24	eggNOG-mapper	1211817.CCAT010000008_gene969	NA	NA
UHGV-0087586_27	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0087586_27	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0087586_27	UniRef90	UniRef90_A0A1C5YZ84	HTH-type transcriptional regulator immR	NA
UHGV-0087586_27	eggNOG-mapper	1151292.QEW_2480	sequence-specific DNA binding	NA
UHGV-0087586_27	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0087586_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087586_27	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0087586_27	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0087586_28	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0087586_28	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0087586_28	UniRef90	UniRef90_A0A1C5YYW2	Helix-turn-helix domain	NA
UHGV-0087586_28	eggNOG-mapper	500633.CLOHIR_00340	Transcriptional	NA
UHGV-0087586_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087586_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0087586_28	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0087586_29	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0087586_29	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0087586_29	UniRef90	UniRef90_A0A1R5UMJ2	Rha family transcriptional regulator	NA
UHGV-0087586_29	eggNOG-mapper	1196322.A370_02088	Phage regulatory protein	NA
UHGV-0087586_29	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0087586_29	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0087586_29	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0087586_29	Structural annotation	PF03374, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0087586_31	Structural annotation	PF12092	NA	NA
UHGV-0087586_33	Structural annotation	PF10922, NF007780	NA	NA
UHGV-0087586_35	Structural annotation	PF01765	NA	NA
UHGV-0087586_37	PHROG	phrog_10056	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0087586_37	UniRef90	UniRef90_UPI00110718F6	phage recombination protein Bet	NA
UHGV-0087586_37	eggNOG-mapper	272563.CD630_09170	Phage recombination protein Bet	NA
UHGV-0087586_37	Pfam	PF03837	RecT family	RecT
UHGV-0087586_37	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0087586_37	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0087586_37	Structural annotation	PF03837, PF16784, TIGR01913, COG3723	NA	NA
UHGV-0087586_38	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0087586_38	UniRef90	UniRef90_UPI00068AA660	helix-turn-helix domain-containing protein	NA
UHGV-0087586_38	eggNOG-mapper	1408823.AXUS01000025_gene2662	DNA-binding transcription factor activity	NA
UHGV-0087586_38	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0087586_38	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0087586_38	Structural annotation	PF13730, MF_01909, NF040939, COG1846	NA	NA
UHGV-0087586_39	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0087586_39	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0087586_39	UniRef90	UniRef90_A0A5P3XF33	DNA helicase	NA
UHGV-0087586_39	eggNOG-mapper	272563.CD630_06260	DnaB-like helicase N terminal domain	NA
UHGV-0087586_39	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0087586_39	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0087586_39	COG	COG0305	Replicative DNA helicase	NA
UHGV-0087586_39	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0087586_41	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0087586_41	UniRef90	UniRef90_A0A1C5YZ22	HTH_Tnp_Tc3_1 domain-containing protein	NA
UHGV-0087586_41	eggNOG-mapper	1267003.KB911365_gene528	NA	NA
UHGV-0087586_41	Structural annotation	PF02796, TIGR04381, COG2771	NA	NA
UHGV-0087586_42	Structural annotation	PF09889	NA	NA
UHGV-0087586_43	PHROG	phrog_824	NA	unknown function
UHGV-0087586_43	UniRef90	UniRef90_UPI0018AC7469	VRR-NUC domain-containing protein	NA
UHGV-0087586_43	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0087586_43	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0087586_43	Structural annotation	PF08774	NA	NA
UHGV-0087586_45	PHROG	phrog_4897	kinase	other
UHGV-0087586_45	UniRef90	UniRef90_A0A418MBD6	NA	NA
UHGV-0087586_45	eggNOG-mapper	500635.MITSMUL_03175	NA	NA
UHGV-0087586_45	Pfam	PF11753	NA	DUF3310
UHGV-0087586_47	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0087586_47	UniRef90	UniRef90_A0A3Q9JM97	HNHc domain-containing protein	NA
UHGV-0087586_47	eggNOG-mapper	1134413.ANNK01000120_gene2048	response regulator	NA
UHGV-0087586_47	PADLOC	HEase_00033	homing endonuclease	RM
UHGV-0087586_47	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0087586_47	Pfam	PF08279	HTH domain	HTH_11
UHGV-0087586_47	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0087586_47	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA