UHGV-0087617

Genome information

Genome length 46,736 bps

CDS count 83

Completeness 100.00% (complete)

geNomad score 0.9646

Prediction confidence Confident

Genome information
Genome ID	UHGV-0087617
vOTU ID	vOTU-055079
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_181383
BioSample	SAMEA3449153
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9646
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.72
Jumbo phage	No

Genome content
Genome length	46,736 bps
GC content	28.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	83
CDS density	84.90%
Average CDS length	481.12 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0087617_2	KOfam	K19449	sinR; XRE family transcriptional regulator, master regulator for biofilm formation	NA
UHGV-0087617_2	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0087617_2	UniRef90	UniRef90_R6YGA8	Post-exponential-phase responses transcriptional regulator	NA
UHGV-0087617_2	eggNOG-mapper	1126885.I3VYY8_9CAUD	sequence-specific DNA binding	NA
UHGV-0087617_2	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0087617_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087617_2	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0087617_2	Structural annotation	PF13443, MF_00535, NF041951, COG3655	NA	NA
UHGV-0087617_3	UniRef90	UniRef90_R7P7N4	Endoribonuclease EndoA	NA
UHGV-0087617_3	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0087617_3	Structural annotation	PF02452, NF010262, COG2337	NA	NA
UHGV-0087617_5	PHROG	phrog_1794	amidase	lysis
UHGV-0087617_5	UniRef90	UniRef90_R7F968	Peptidoglycan-binding domain 1 protein	NA
UHGV-0087617_5	eggNOG-mapper	1121422.AUMW01000009_gene3264	Papain-like cysteine protease AvrRpt2	NA
UHGV-0087617_5	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0087617_5	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0087617_5	COG	COG0768	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	NA
UHGV-0087617_5	Structural annotation	PF03412, PF08239, PF18341, NF040678, NF033920, COG4991, COG4990	NA	NA
UHGV-0087617_6	PHROG	phrog_937	hemolysin	other
UHGV-0087617_7	eggNOG-mapper	221288.JH992901_gene3335	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	NA
UHGV-0087617_8	eggNOG-mapper	908340.HMPREF9406_0815	NA	NA
UHGV-0087617_8	COG	COG4926	Phage-related protein	NA
UHGV-0087617_9	PHROG	phrog_6616	tail protein	tail
UHGV-0087617_9	UniRef90	UniRef90_R6H354	Carbohydrate binding domain protein	NA
UHGV-0087617_9	eggNOG-mapper	1414720.CBYM010000002_gene560	Phage minor structural protein	NA
UHGV-0087617_9	COG	COG4926	Phage-related protein	NA
UHGV-0087617_9	Structural annotation	PF16466, TIGR03361, COG3500	NA	NA
UHGV-0087617_10	PHROG	phrog_1194	NA	unknown function
UHGV-0087617_10	Pfam	PF20458	NA	DUF6711
UHGV-0087617_11	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0087617_11	eggNOG-mapper	428127.EUBDOL_01563	homoserine transmembrane transporter activity	NA
UHGV-0087617_11	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0087617_11	Structural annotation	PF20155	NA	NA
UHGV-0087617_12	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0087617_13	Structural annotation	PF16478	NA	NA
UHGV-0087617_14	PHROG	phrog_158	major tail protein	tail
UHGV-0087617_14	UniRef90	UniRef90_UPI000283F880	tail protein	NA
UHGV-0087617_14	eggNOG-mapper	1293597.BN147_01430	Phage tail tube protein, TTP	NA
UHGV-0087617_14	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0087617_15	Structural annotation	PF08873, COG5003	NA	NA
UHGV-0087617_16	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0087617_16	Structural annotation	TIGR01725	NA	NA
UHGV-0087617_17	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0087617_18	Structural annotation	PF05135	NA	NA
UHGV-0087617_20	PHROG	phrog_247	major head protein	head and packaging
UHGV-0087617_20	UniRef90	UniRef90_UPI001DF3501D	coat protein	NA
UHGV-0087617_20	eggNOG-mapper	1304866.K413DRAFT_3038	NA	NA
UHGV-0087617_20	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0087617_21	Structural annotation	PF14265	NA	NA
UHGV-0087617_22	PHROG	phrog_64	portal protein	head and packaging
UHGV-0087617_22	UniRef90	UniRef90_A0A374HKE8	Phage portal protein	NA
UHGV-0087617_22	eggNOG-mapper	1232453.BAIF02000058_gene1625	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0087617_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0087617_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0087617_24	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0087617_24	UniRef90	UniRef90_A0A416VUC6	Terminase large subunit	NA
UHGV-0087617_24	eggNOG-mapper	428127.EUBDOL_01551	chromosome segregation	NA
UHGV-0087617_24	COG	COG5410	NA	NA
UHGV-0087617_24	Structural annotation	PF17289, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0087617_25	Structural annotation	PF13560, TIGR03070, COG1396	NA	NA
UHGV-0087617_26	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0087617_26	UniRef90	UniRef90_A0A2N0ZME2	Endonuclease	NA
UHGV-0087617_26	eggNOG-mapper	749413.E5DV63_9VIRU	HNH endonuclease	NA
UHGV-0087617_26	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0087617_26	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0087617_26	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0087617_26	Structural annotation	PF07463	NA	NA
UHGV-0087617_28	PHROG	phrog_35094	NA	unknown function
UHGV-0087617_28	eggNOG-mapper	547228.M4ZRU5_9CAUD	NA	NA
UHGV-0087617_31	PHROG	phrog_14275	NA	unknown function
UHGV-0087617_31	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0087617_35	PHROG	phrog_10415	NA	unknown function
UHGV-0087617_35	UniRef90	UniRef90_A0A843GQJ7	LPD29 domain-containing protein (Fragment)	NA
UHGV-0087617_35	eggNOG-mapper	1151292.QEW_4463	DnaJ molecular chaperone homology domain	NA
UHGV-0087617_35	Pfam	PF18847	Large polyvalent protein associated domain 29	LPD29
UHGV-0087617_35	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0087617_42	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0087617_42	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0087617_42	UniRef90	UniRef90_A0A843GTF7	RNA-splicing ligase RtcB	NA
UHGV-0087617_42	eggNOG-mapper	1294142.CINTURNW_1879	tRNA-splicing ligase RtcB	NA
UHGV-0087617_42	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0087617_42	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0087617_42	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0087617_47	PHROG	phrog_625	NA	unknown function
UHGV-0087617_47	UniRef90	UniRef90_A0A7X5CLQ1	ASCH domain-containing protein	NA
UHGV-0087617_47	eggNOG-mapper	397290.C810_01502	NA	NA
UHGV-0087617_47	Structural annotation	PF12961, NF003443, COG2947	NA	NA
UHGV-0087617_50	PHROG	phrog_23490	NA	unknown function
UHGV-0087617_50	UniRef90	UniRef90_R6RLI7	YoqE	NA
UHGV-0087617_50	eggNOG-mapper	1122918.KB907248_gene4513	NA	NA
UHGV-0087617_53	eggNOG-mapper	1196322.A370_02095	NUMOD4 motif	NA
UHGV-0087617_53	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0087617_55	UniRef90	UniRef90_A9U7U9	Predicted protein (Fragment)	NA
UHGV-0087617_55	eggNOG-mapper	1444310.JANV01000162_gene1216	NA	NA
UHGV-0087617_57	PHROG	phrog_803	host nuclease inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0087617_57	UniRef90	UniRef90_I0GS02	Putative phage protein	NA
UHGV-0087617_57	eggNOG-mapper	1123309.AQYB01000014_gene918	NA	NA
UHGV-0087617_60	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0087617_60	eggNOG-mapper	500635.MITSMUL_03105	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0087617_60	AcrCatalog	cluster_113756	NA	NA
UHGV-0087617_60	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0087617_61	eggNOG-mapper	32057.KB217481_gene8515	NA	NA
UHGV-0087617_61	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0087617_62	Structural annotation	PF15188	NA	NA
UHGV-0087617_64	PHROG	phrog_4973	NA	unknown function
UHGV-0087617_64	UniRef90	UniRef90_UPI00164C43FE	helix-turn-helix domain-containing protein	NA
UHGV-0087617_64	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-0087617_64	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0087617_64	Structural annotation	PF14090, MF_01586, TIGR00373, COG5625	NA	NA
UHGV-0087617_65	PHROG	phrog_154	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0087617_65	Structural annotation	PF17399	NA	NA
UHGV-0087617_66	PHROG	phrog_9804	NA	unknown function
UHGV-0087617_66	UniRef90	UniRef90_UPI00058D49CF	replicative helicase loader/inhibitor	NA
UHGV-0087617_66	eggNOG-mapper	1499683.CCFF01000013_gene503	Loader and inhibitor of phage G40P	NA
UHGV-0087617_66	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0087617_66	Structural annotation	PF11417	NA	NA
UHGV-0087617_67	PHROG	phrog_2149	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0087617_67	eggNOG-mapper	632292.Calhy_0413	NA	NA
UHGV-0087617_67	Structural annotation	PF01475, TIGR01610, COG0735	NA	NA
UHGV-0087617_68	KOfam	K06412	spoVG; stage V sporulation protein G	NA
UHGV-0087617_68	UniRef90	UniRef90_UPI0004505ED9	septation regulator SpoVG	NA
UHGV-0087617_68	eggNOG-mapper	1230342.CTM_15807	Could be involved in septation	NA
UHGV-0087617_68	Pfam	PF04026	SpoVG	SpoVG
UHGV-0087617_68	COG	COG2088	DNA-binding protein SpoVG, cell septation regulator	NA
UHGV-0087617_68	Structural annotation	PF04026, MF_00819, NF009749, COG2088	NA	NA
UHGV-0087617_69	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0087617_69	UniRef90	UniRef90_A0A3D8YK55	HNH endonuclease	NA
UHGV-0087617_69	eggNOG-mapper	525378.HMPREF0793_1842	HNH endonuclease	NA
UHGV-0087617_69	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0087617_69	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0087617_69	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0087617_71	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0087617_71	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0087617_71	UniRef90	UniRef90_A0A5R8Q8N0	Recombinase RecT	NA
UHGV-0087617_71	eggNOG-mapper	742725.HMPREF9450_02076	RecT family	NA
UHGV-0087617_71	Pfam	PF03837	RecT family	RecT
UHGV-0087617_71	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0087617_71	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0087617_71	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0087617_73	PHROG	phrog_10477	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0087617_75	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0087617_75	UniRef90	UniRef90_A0A2K9V3J9	Exonuclease	NA
UHGV-0087617_75	eggNOG-mapper	1399942.U3PDT7_9CAUD	nuclease activity	NA
UHGV-0087617_75	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0087617_75	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0087617_78	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0087617_78	UniRef90	UniRef90_R7FI06	MazG family protein	NA
UHGV-0087617_78	eggNOG-mapper	1145276.T479_16390	Transition state regulator Abh	NA
UHGV-0087617_78	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0087617_81	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0087617_81	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0087617_81	UniRef90	UniRef90_A0A1Q6K3M2	HTH cro/C1-type domain-containing protein	NA
UHGV-0087617_81	eggNOG-mapper	1297570.MESS4_330009	PFAM helix-turn-helix domain protein	NA
UHGV-0087617_81	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0087617_81	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087617_81	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0087617_81	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0087617_82	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0087617_82	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0087617_82	UniRef90	UniRef90_UPI000429E9B4	helix-turn-helix domain-containing protein	NA
UHGV-0087617_82	eggNOG-mapper	1403313.AXBR01000018_gene3552	Peptidase S24-like	NA
UHGV-0087617_82	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087617_82	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0087617_82	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0087617_82	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0087617_83	KOfam	K14059	int; integrase	NA
UHGV-0087617_83	PHROG	phrog_1	integrase	integration and excision
UHGV-0087617_83	UniRef90	UniRef90_R6DVW0	Phage integrase	NA
UHGV-0087617_83	eggNOG-mapper	1161902.HMPREF0378_0144	DNA integration	NA
UHGV-0087617_83	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0087617_83	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0087617_83	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0087617_83	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA